Wall clock time and date at job start Mon Mar 30 2020 07:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38233 * 120.00207 * 2 1 4 4 C 1.38234 * 120.00037 * 179.72405 * 3 2 1 5 5 C 1.38235 * 120.00220 * 0.28719 * 4 3 2 6 6 S 1.76202 * 120.00249 * 179.97438 * 5 4 3 7 7 O 1.42101 * 103.00004 * 203.84780 * 6 5 4 8 8 C 1.81393 * 103.00197 * 89.99703 * 6 5 4 9 9 C 1.53003 * 109.47449 * 180.02562 * 8 6 5 10 10 O 1.42895 * 109.47343 * 179.97438 * 9 8 6 11 11 C 1.42897 * 114.00043 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47308 * 180.02562 * 11 10 9 13 13 H 1.07997 * 120.00026 * 359.97438 * 12 11 10 14 14 C 1.37883 * 120.00024 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99776 * 179.97438 * 14 12 11 16 16 Si 1.86802 * 119.99887 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47078 * 90.00334 * 16 14 12 18 18 H 1.48501 * 109.46931 * 209.99813 * 16 14 12 19 19 H 1.48494 * 109.47263 * 330.00024 * 16 14 12 20 20 C 1.38238 * 119.99712 * 359.97124 * 5 4 3 21 21 C 1.38233 * 120.00012 * 359.96176 * 20 5 4 22 22 H 1.09000 * 109.47363 * 89.99511 * 1 2 3 23 23 H 1.09000 * 109.47097 * 209.99342 * 1 2 3 24 24 H 1.09001 * 109.47081 * 329.99847 * 1 2 3 25 25 H 1.08002 * 120.00157 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00009 * 180.25939 * 4 3 2 27 27 H 1.09008 * 109.47248 * 300.00312 * 8 6 5 28 28 H 1.08997 * 109.47616 * 59.99698 * 8 6 5 29 29 H 1.09000 * 109.46460 * 300.00342 * 9 8 6 30 30 H 1.09002 * 109.46661 * 59.99510 * 9 8 6 31 31 H 1.08996 * 109.47119 * 300.00229 * 11 10 9 32 32 H 1.09004 * 109.47059 * 60.00246 * 11 10 9 33 33 H 0.97000 * 119.99392 * 179.97438 * 15 14 12 34 34 H 1.08002 * 119.99672 * 179.97438 * 20 5 4 35 35 H 1.08004 * 119.99493 * 180.02562 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1981 1.1971 0.0000 4 6 3.5805 1.1971 0.0058 5 6 4.2717 -0.0001 0.0055 6 16 6.0337 -0.0001 0.0122 7 8 6.3554 -1.2652 -0.5494 8 6 6.4351 -0.0042 1.7812 9 6 7.9547 -0.0040 1.9594 10 8 8.2709 -0.0067 3.3529 11 6 9.6726 -0.0073 3.6309 12 6 9.8890 -0.0108 5.1222 13 1 9.0410 -0.0119 5.7909 14 6 11.1697 -0.0114 5.6330 15 7 11.3585 -0.0139 6.9345 16 14 12.6366 -0.0087 4.4763 17 1 13.0249 1.3921 4.1726 18 1 13.7762 -0.7096 5.1206 19 1 12.2747 -0.7063 3.2164 20 6 3.5805 -1.1972 0.0001 21 6 2.1981 -1.1972 -0.0042 22 1 -0.3634 0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5139 25 1 1.6582 2.1325 0.0004 26 1 4.1205 2.1324 0.0100 27 1 6.0144 0.8847 2.2513 28 1 6.0144 -0.8952 2.2472 29 1 8.3757 -0.8927 1.4891 30 1 8.3750 0.8872 1.4934 31 1 10.1288 -0.8965 3.1958 32 1 10.1290 0.8835 3.1992 33 1 12.2595 -0.0147 7.2938 34 1 4.1205 -2.1325 -0.0005 35 1 1.6582 -2.1325 -0.0080 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385320048.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:30 Heat of formation + Delta-G solvation = -94.767650 kcal Electronic energy + Delta-G solvation = -17070.771977 eV Core-core repulsion = 14159.159978 eV Total energy + Delta-G solvation = -2911.611999 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.16017 -38.77798 -36.99087 -34.97031 -33.82342 -32.56050 -31.93828 -29.77866 -28.02690 -24.27394 -23.87788 -23.74919 -22.48510 -19.21096 -18.97587 -18.01810 -17.28599 -17.05740 -16.47093 -16.38791 -16.07671 -15.68141 -15.08869 -14.91198 -14.74074 -14.62913 -14.42740 -14.31457 -13.61655 -13.10955 -13.10238 -13.02498 -12.90747 -12.60564 -12.44884 -12.26492 -12.01847 -11.84991 -11.46799 -11.28889 -10.94513 -10.43374 -9.99010 -9.94869 -9.44857 -8.39781 -6.48808 -0.15965 0.39175 0.81438 1.33294 1.37226 1.48110 1.69204 2.28672 2.60539 2.83982 2.92709 3.19812 3.80841 3.91195 3.93795 4.02234 4.04961 4.36122 4.38179 4.46082 4.53117 4.69617 4.74317 4.76465 4.81967 4.96560 4.98876 5.05156 5.15752 5.29238 5.31809 5.39584 5.56657 5.89150 5.99649 6.54884 6.68336 7.15816 8.77407 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.038948 B = 0.003244 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.736579 B = 8630.102029 C = 8975.513034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.057 4.057 3 C -0.143 4.143 4 C -0.032 4.032 5 C -0.484 4.484 6 S 1.421 4.579 7 O -0.914 6.914 8 C -0.456 4.456 9 C 0.063 3.937 10 O -0.408 6.408 11 C 0.174 3.826 12 C -0.551 4.551 13 H 0.028 0.972 14 C 0.012 3.988 15 N -0.942 5.942 16 Si 0.957 3.043 17 H -0.249 1.249 18 H -0.274 1.274 19 H -0.248 1.248 20 C -0.081 4.081 21 C -0.156 4.156 22 H 0.086 0.914 23 H 0.069 0.931 24 H 0.086 0.914 25 H 0.162 0.838 26 H 0.184 0.816 27 H 0.146 0.854 28 H 0.062 0.938 29 H 0.032 0.968 30 H 0.095 0.905 31 H 0.006 0.994 32 H 0.028 0.972 33 H 0.274 0.726 34 H 0.098 0.902 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.119 7.689 -20.533 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.057 4.057 3 C -0.162 4.162 4 C -0.050 4.050 5 C -0.582 4.582 6 S 1.618 4.382 7 O -0.910 6.910 8 C -0.590 4.590 9 C -0.014 4.014 10 O -0.328 6.328 11 C 0.098 3.902 12 C -0.589 4.589 13 H 0.046 0.954 14 C -0.186 4.186 15 N -0.581 5.581 16 Si 0.778 3.222 17 H -0.173 1.173 18 H -0.200 1.200 19 H -0.172 1.172 20 C -0.100 4.100 21 C -0.175 4.175 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.105 0.895 25 H 0.180 0.820 26 H 0.201 0.799 27 H 0.164 0.836 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.024 0.976 32 H 0.045 0.955 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.502 7.654 -20.996 29.013 hybrid contribution -0.188 -2.587 1.318 2.909 sum -18.690 5.067 -19.678 27.608 Atomic orbital electron populations 1.20947 0.88890 1.04061 1.03626 1.20566 0.97890 0.93076 0.94184 1.21665 0.94695 0.98649 1.01161 1.21459 0.94651 0.97198 0.91739 1.27651 1.18863 0.97950 1.13753 1.68749 0.80854 1.05872 0.82697 1.92958 1.80331 1.47854 1.69819 1.28047 0.99906 1.08423 1.22607 1.22206 0.93918 1.01409 0.83893 1.87900 1.25659 1.95333 1.23915 1.20414 0.79231 0.95573 0.94948 1.21170 0.93496 1.52858 0.91378 0.95363 1.25894 1.02198 0.93241 0.97246 1.70036 1.23575 1.50822 1.13674 0.85580 0.77256 0.80289 0.79080 1.17331 1.19950 1.17200 1.21155 0.95591 0.97507 0.95776 1.21315 0.93686 0.99229 1.03259 0.89533 0.91221 0.89489 0.82002 0.79851 0.83578 0.91891 0.95018 0.88697 0.97611 0.95470 0.91681 0.88333 0.85277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 10.01 71.23 0.71 -0.43 16 2 C -0.06 -0.91 5.88 -19.87 -0.12 -1.03 16 3 C -0.14 -1.85 9.70 22.27 0.22 -1.64 16 4 C -0.03 -0.43 9.75 22.27 0.22 -0.21 16 5 C -0.48 -10.14 5.61 22.27 0.12 -10.01 16 6 S 1.42 29.86 13.55 -56.49 -0.77 29.09 16 7 O -0.91 -31.62 16.90 -148.98 -2.52 -34.14 16 8 C -0.46 -12.63 6.25 71.98 0.45 -12.18 16 9 C 0.06 2.18 5.95 71.98 0.43 2.61 16 10 O -0.41 -19.64 10.33 -148.98 -1.54 -21.18 16 11 C 0.17 8.93 4.76 71.23 0.34 9.27 16 12 C -0.55 -34.31 9.99 25.60 0.26 -34.05 16 13 H 0.03 1.98 8.06 -2.91 -0.02 1.95 16 14 C 0.01 0.73 5.47 84.66 0.46 1.20 16 15 N -0.94 -59.86 13.96 21.45 0.30 -59.57 16 16 Si 0.96 43.46 27.47 68.60 1.88 45.34 16 17 H -0.25 -10.40 7.11 99.48 0.71 -9.69 16 18 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 19 H -0.25 -10.53 6.54 99.48 0.65 -9.88 16 20 C -0.08 -2.09 9.44 22.27 0.21 -1.88 16 21 C -0.16 -3.28 9.70 22.27 0.22 -3.07 16 22 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 23 H 0.07 0.67 8.09 -2.39 -0.02 0.65 16 24 H 0.09 0.58 8.09 -2.39 -0.02 0.56 16 25 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 26 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 27 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.01 0.31 7.20 -2.39 -0.02 0.29 16 32 H 0.03 1.26 7.57 -2.39 -0.02 1.25 16 33 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 34 H 0.10 3.00 7.45 -2.91 -0.02 2.98 16 35 H 0.13 2.36 8.06 -2.91 -0.02 2.33 16 Total: -1.00 -88.40 315.12 1.89 -86.51 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: 1.01 Total: 5.37 kcal Atomic # 6 Polarization: -54.95 SS G_CDS: 3.52 Total: -51.43 kcal Atomic # 7 Polarization: -59.86 SS G_CDS: 0.30 Total: -59.57 kcal Atomic # 8 Polarization: -51.26 SS G_CDS: -4.06 Total: -55.31 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.88 Total: 45.34 kcal Atomic # 16 Polarization: 29.86 SS G_CDS: -0.77 Total: 29.09 kcal Total: -88.40 1.89 -86.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385320048.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.259 kcal (2) G-P(sol) polarization free energy of solvation -88.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds