Wall clock time and date at job start Mon Mar 30 2020 07:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 S 1.76206 * 120.00134 * 0.06573 * 7 2 1 9 9 O 1.42094 * 102.99865 * 161.31778 * 8 7 2 10 10 C 1.81405 * 102.99455 * 275.16832 * 8 7 2 11 11 C 1.53005 * 109.46803 * 179.97438 * 10 8 7 12 12 O 1.42894 * 109.47112 * 180.02562 * 11 10 8 13 13 C 1.42898 * 114.00230 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47438 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00490 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00091 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99788 * 180.02562 * 16 14 13 18 18 Si 1.86801 * 119.99841 * 359.97438 * 16 14 13 19 19 H 1.48497 * 109.47012 * 90.00163 * 18 16 14 20 20 H 1.48499 * 109.46707 * 209.99869 * 18 16 14 21 21 H 1.48492 * 109.47058 * 329.99910 * 18 16 14 22 22 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 23 23 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 24 24 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 25 25 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 27 27 H 1.08005 * 120.00230 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99734 * 179.97438 * 6 5 4 29 29 H 1.08992 * 109.47163 * 299.99854 * 10 8 7 30 30 H 1.08996 * 109.47020 * 60.00633 * 10 8 7 31 31 H 1.08997 * 109.47370 * 300.00553 * 11 10 8 32 32 H 1.08999 * 109.46816 * 60.00079 * 11 10 8 33 33 H 1.09007 * 109.46908 * 300.00038 * 13 12 11 34 34 H 1.09005 * 109.47154 * 59.99542 * 13 12 11 35 35 H 0.97006 * 119.99579 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0003 7 6 2.1981 -1.1969 -0.0045 8 16 1.3172 -2.7229 -0.0121 9 8 2.2938 -3.6535 -0.4587 10 6 0.9736 -3.0043 1.7468 11 6 0.1994 -4.3136 1.9120 12 8 -0.0718 -4.5350 3.2974 13 6 -0.7947 -5.7387 3.5631 14 6 -1.0234 -5.8703 5.0467 15 1 -0.6534 -5.1109 5.7197 16 6 -1.7051 -6.9602 5.5452 17 7 -1.9051 -7.0747 6.8400 18 14 -2.3457 -8.2734 4.3813 19 1 -1.3084 -9.3198 4.1966 20 1 -3.5711 -8.8867 4.9535 21 1 -2.6669 -7.6575 3.0689 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1328 0.0101 27 1 5.3517 0.0002 0.0099 28 1 4.1207 -2.1321 -0.0002 29 1 1.9135 -3.0658 2.2952 30 1 0.3783 -2.1789 2.1372 31 1 -0.7405 -4.2517 1.3635 32 1 0.7943 -5.1392 1.5214 33 1 -1.7550 -5.7069 3.0484 34 1 -0.2199 -6.5938 3.2072 35 1 -2.3844 -7.8417 7.1907 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385324676.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:35 Heat of formation + Delta-G solvation = -65.186326 kcal Electronic energy + Delta-G solvation = -17397.862088 eV Core-core repulsion = 14487.532831 eV Total energy + Delta-G solvation = -2910.329257 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.44001 -37.04186 -35.84807 -33.13642 -32.78224 -31.30382 -31.04992 -27.72477 -27.18854 -23.45064 -22.52542 -21.88515 -21.70820 -18.07926 -17.02361 -16.80440 -15.97735 -15.89710 -15.39080 -15.33466 -14.60971 -14.50472 -14.23377 -13.86363 -13.39981 -13.38549 -13.08763 -12.59333 -12.43354 -12.35841 -12.20636 -11.84762 -11.39524 -11.24548 -11.07156 -10.85345 -10.70673 -10.25169 -9.87902 -9.44436 -9.22650 -8.98415 -8.90787 -8.51772 -8.42067 -6.13584 -4.13213 0.66298 1.11263 1.71798 2.60279 3.24445 3.31245 3.32231 3.40910 3.77405 4.34045 4.49002 4.61930 4.71776 4.74277 4.96202 5.10596 5.15253 5.17813 5.32596 5.34991 5.41306 5.51219 5.63910 5.66385 5.86987 5.97660 6.05754 6.13867 6.16300 6.19255 6.56707 6.69187 6.95828 7.56064 7.95844 8.62494 8.97025 9.45144 10.99357 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.035661 B = 0.003572 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.991707 B = 7837.317896 C = 7994.793591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.008 4.008 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.144 4.144 6 C -0.048 4.048 7 C -0.460 4.460 8 S 1.330 4.670 9 O -0.854 6.854 10 C -0.451 4.451 11 C 0.080 3.920 12 O -0.377 6.377 13 C 0.166 3.834 14 C -0.522 4.522 15 H 0.082 0.918 16 C 0.073 3.927 17 N -0.895 5.895 18 Si 0.876 3.124 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.088 0.912 23 H 0.077 0.923 24 H 0.079 0.921 25 H 0.128 0.872 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.129 0.871 29 H 0.094 0.906 30 H 0.122 0.878 31 H 0.051 0.949 32 H 0.042 0.958 33 H 0.007 0.993 34 H 0.000 1.000 35 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.576 17.285 -18.421 25.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.009 4.009 3 C -0.159 4.159 4 C -0.101 4.101 5 C -0.163 4.163 6 C -0.067 4.067 7 C -0.557 4.557 8 S 1.528 4.472 9 O -0.849 6.849 10 C -0.587 4.587 11 C 0.001 3.999 12 O -0.296 6.296 13 C 0.091 3.909 14 C -0.559 4.559 15 H 0.100 0.900 16 C -0.129 4.129 17 N -0.533 5.533 18 Si 0.703 3.297 19 H -0.199 1.199 20 H -0.207 1.207 21 H -0.189 1.189 22 H 0.106 0.894 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.146 0.854 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.147 0.853 29 H 0.113 0.887 30 H 0.140 0.860 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.025 0.975 34 H 0.017 0.983 35 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 4.320 16.703 -18.890 25.583 hybrid contribution 1.713 -0.810 0.713 2.024 sum 6.032 15.893 -18.178 24.888 Atomic orbital electron populations 1.21112 0.90279 1.04230 1.03793 1.19616 0.96024 0.91628 0.93618 1.21163 0.94354 0.97775 1.02650 1.21326 0.94586 0.98038 0.96167 1.21239 1.00102 0.92637 1.02339 1.21162 0.93476 0.98806 0.93239 1.27581 1.02349 1.13506 1.12245 1.69650 1.07502 0.81119 0.88917 1.93075 1.61602 1.57704 1.72550 1.27872 1.06894 1.04260 1.19689 1.21767 0.97259 0.93756 0.87127 1.87954 1.76773 1.44409 1.20478 1.20663 0.90057 0.82134 0.98068 1.20882 1.36452 1.08878 0.89734 0.89976 1.24773 0.95433 0.97576 0.95165 1.69876 1.41469 1.30261 1.11695 0.86841 0.79051 0.82284 0.81558 1.19898 1.20682 1.18943 0.89379 0.90398 0.90188 0.85427 0.85785 0.85879 0.85332 0.88739 0.85957 0.93096 0.93980 0.97534 0.98259 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.55 36.00 0.34 -0.44 16 2 C -0.01 -0.07 5.88 -104.63 -0.62 -0.68 16 3 C -0.14 -1.19 9.70 -39.58 -0.38 -1.58 16 4 C -0.08 -0.74 10.05 -39.58 -0.40 -1.13 16 5 C -0.14 -1.50 10.05 -39.58 -0.40 -1.90 16 6 C -0.05 -0.60 9.45 -39.58 -0.37 -0.98 16 7 C -0.46 -5.27 5.63 -39.59 -0.22 -5.49 16 8 S 1.33 15.33 11.81 -107.50 -1.27 14.06 16 9 O -0.85 -14.73 16.78 -35.23 -0.59 -15.32 16 10 C -0.45 -6.45 6.14 37.16 0.23 -6.22 16 11 C 0.08 1.41 5.95 37.16 0.22 1.63 16 12 O -0.38 -8.97 10.33 -35.23 -0.36 -9.33 16 13 C 0.17 4.28 4.76 36.00 0.17 4.45 16 14 C -0.52 -15.70 9.99 -34.44 -0.34 -16.04 16 15 H 0.08 2.70 8.06 -52.49 -0.42 2.28 16 16 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 17 N -0.89 -27.72 13.96 55.43 0.77 -26.95 16 18 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.26 -6.12 6.54 56.52 0.37 -5.75 16 22 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 23 H 0.08 0.39 6.00 -51.93 -0.31 0.08 16 24 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 25 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 26 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 27 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 28 H 0.13 1.78 7.34 -52.49 -0.39 1.39 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.12 1.48 7.48 -51.93 -0.39 1.10 16 31 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.17 7.20 -51.93 -0.37 -0.20 16 34 H 0.00 -0.01 7.57 -51.93 -0.39 -0.40 16 35 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 310.50 15.07 4.68 4.68 Total: -1.00 -38.10 310.50 -8.13 -46.23 By element: Atomic # 1 Polarization: 1.05 SS G_CDS: -4.82 Total: -3.77 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: -1.87 Total: -26.33 kcal Atomic # 7 Polarization: -27.72 SS G_CDS: 0.77 Total: -26.95 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.95 Total: -24.65 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 15.33 SS G_CDS: -1.27 Total: 14.06 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -38.10 -8.13 -46.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385324676.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.958 kcal (2) G-P(sol) polarization free energy of solvation -38.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds