Wall clock time and date at job start Mon Mar 30 2020 07:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38260 * 119.99559 * 2 1 4 4 C 1.38212 * 119.99650 * 179.71963 * 3 2 1 5 5 C 1.38255 * 120.00300 * 0.28729 * 4 3 2 6 6 C 1.38216 * 119.99744 * 359.97134 * 5 4 3 7 7 C 1.38208 * 120.00322 * 180.21766 * 2 1 3 8 8 S 1.76206 * 120.00134 * 0.06573 * 7 2 1 9 9 O 1.42097 * 102.99742 * 29.01995 * 8 7 2 10 10 C 1.81405 * 102.99455 * 275.16832 * 8 7 2 11 11 C 1.53005 * 109.46803 * 179.97438 * 10 8 7 12 12 O 1.42894 * 109.47112 * 180.02562 * 11 10 8 13 13 C 1.42898 * 114.00230 * 180.02562 * 12 11 10 14 14 C 1.50694 * 109.47438 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00490 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00091 * 179.97438 * 14 13 12 17 17 N 1.31511 * 119.99688 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99775 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47414 * 60.00246 * 18 16 14 20 20 H 1.48504 * 109.46914 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47458 * 299.99708 * 18 16 14 22 22 H 1.09000 * 109.46985 * 89.99836 * 1 2 3 23 23 H 1.09000 * 109.47001 * 209.99377 * 1 2 3 24 24 H 1.08998 * 109.47342 * 329.99390 * 1 2 3 25 25 H 1.08002 * 120.00476 * 0.02562 * 3 2 1 26 26 H 1.07999 * 119.99941 * 180.25946 * 4 3 2 27 27 H 1.08005 * 120.00230 * 179.97438 * 5 4 3 28 28 H 1.08002 * 119.99734 * 179.97438 * 6 5 4 29 29 H 1.08992 * 109.47163 * 299.99854 * 10 8 7 30 30 H 1.08996 * 109.47020 * 60.00633 * 10 8 7 31 31 H 1.08997 * 109.47370 * 300.00553 * 11 10 8 32 32 H 1.08999 * 109.46816 * 60.00079 * 11 10 8 33 33 H 1.09007 * 109.46908 * 300.00038 * 13 12 11 34 34 H 1.09005 * 109.47154 * 59.99542 * 13 12 11 35 35 H 0.97002 * 119.99753 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5803 1.1975 0.0059 5 6 4.2717 0.0002 0.0057 6 6 3.5806 -1.1968 0.0003 7 6 2.1981 -1.1969 -0.0045 8 16 1.3172 -2.7229 -0.0121 9 8 0.1095 -2.3915 -0.6835 10 6 0.9736 -3.0043 1.7468 11 6 0.1994 -4.3136 1.9120 12 8 -0.0718 -4.5350 3.2974 13 6 -0.7947 -5.7387 3.5631 14 6 -1.0234 -5.8703 5.0467 15 1 -0.6534 -5.1109 5.7197 16 6 -1.7051 -6.9602 5.5452 17 7 -2.1552 -7.8852 4.7259 18 14 -1.9892 -7.1229 7.3843 19 1 -2.7719 -5.9578 7.8693 20 1 -2.7403 -8.3739 7.6604 21 1 -0.6809 -7.1668 8.0854 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5139 25 1 1.6582 2.1327 0.0004 26 1 4.1203 2.1328 0.0101 27 1 5.3517 0.0002 0.0099 28 1 4.1207 -2.1321 -0.0002 29 1 1.9135 -3.0658 2.2952 30 1 0.3783 -2.1789 2.1372 31 1 -0.7405 -4.2517 1.3635 32 1 0.7943 -5.1392 1.5214 33 1 -1.7550 -5.7069 3.0484 34 1 -0.2199 -6.5938 3.2072 35 1 -2.6351 -8.6518 5.0765 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385324680.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:37 Heat of formation + Delta-G solvation = -89.397411 kcal Electronic energy + Delta-G solvation = -17429.156624 eV Core-core repulsion = 14517.777496 eV Total energy + Delta-G solvation = -2911.379128 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.092 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.15649 -38.69552 -37.06677 -35.03061 -33.71692 -32.43596 -31.99669 -29.16719 -27.91403 -24.72787 -24.30404 -23.45186 -22.47286 -18.97881 -18.62876 -17.91714 -17.23280 -17.10812 -16.61809 -16.48361 -16.19409 -15.74533 -15.18825 -14.84996 -14.80267 -14.60477 -14.03979 -13.88042 -13.69010 -13.12144 -12.97959 -12.94881 -12.88951 -12.53270 -12.49709 -12.27493 -12.05348 -12.02882 -11.39169 -11.16163 -10.90295 -10.30029 -10.13671 -9.68620 -9.41739 -8.34235 -6.47673 -0.09249 0.41366 0.83413 1.39140 1.44051 1.52680 1.72560 2.33753 2.65975 2.90159 2.99243 3.30002 3.78411 3.89351 3.96143 4.06902 4.14382 4.30003 4.37304 4.53012 4.56501 4.62968 4.70482 4.76657 4.80502 4.97586 5.02786 5.13566 5.19599 5.34296 5.47377 5.51442 5.51816 5.92159 6.03266 6.47924 6.76634 7.24189 8.77885 Molecular weight = 268.09amu Principal moments of inertia in cm(-1) A = 0.034951 B = 0.003416 C = 0.003344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.935941 B = 8193.818076 C = 8372.310008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.045 4.045 3 C -0.158 4.158 4 C -0.083 4.083 5 C -0.146 4.146 6 C -0.035 4.035 7 C -0.483 4.483 8 S 1.408 4.592 9 O -0.897 6.897 10 C -0.452 4.452 11 C 0.069 3.931 12 O -0.411 6.411 13 C 0.204 3.796 14 C -0.556 4.556 15 H 0.061 0.939 16 C 0.007 3.993 17 N -0.929 5.929 18 Si 0.985 3.015 19 H -0.269 1.269 20 H -0.273 1.273 21 H -0.261 1.261 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.070 0.930 25 H 0.130 0.870 26 H 0.151 0.849 27 H 0.162 0.838 28 H 0.180 0.820 29 H 0.144 0.856 30 H 0.066 0.934 31 H 0.024 0.976 32 H 0.082 0.918 33 H -0.020 1.020 34 H 0.000 1.000 35 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.681 14.178 -11.703 24.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.046 4.046 3 C -0.177 4.177 4 C -0.101 4.101 5 C -0.165 4.165 6 C -0.053 4.053 7 C -0.581 4.581 8 S 1.605 4.395 9 O -0.893 6.893 10 C -0.586 4.586 11 C -0.009 4.009 12 O -0.331 6.331 13 C 0.129 3.871 14 C -0.593 4.593 15 H 0.079 0.921 16 C -0.191 4.191 17 N -0.568 5.568 18 Si 0.807 3.193 19 H -0.194 1.194 20 H -0.198 1.198 21 H -0.186 1.186 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.089 0.911 25 H 0.148 0.852 26 H 0.169 0.831 27 H 0.180 0.820 28 H 0.197 0.803 29 H 0.162 0.838 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.100 0.900 33 H -0.002 1.002 34 H 0.018 0.982 35 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.355 13.566 -12.336 24.570 hybrid contribution -2.060 1.545 1.441 2.951 sum 14.294 15.111 -10.895 23.482 Atomic orbital electron populations 1.21045 0.92169 1.02137 1.02827 1.20070 0.95483 0.94223 0.94857 1.21369 0.95757 0.97334 1.03223 1.21728 0.93532 1.00168 0.94665 1.21747 1.01913 0.92047 1.00813 1.21436 0.90842 1.01072 0.91999 1.27585 1.04367 1.12004 1.14133 1.68888 0.94063 0.95029 0.81497 1.93021 1.48910 1.82074 1.65290 1.28017 1.07430 1.00212 1.22910 1.22076 0.97753 0.96776 0.84253 1.87839 1.76631 1.44379 1.24262 1.19913 0.89171 0.81745 0.96242 1.21373 1.37526 1.08077 0.92334 0.92052 1.25986 0.94231 0.94367 1.04557 1.70057 1.37769 1.11513 1.37424 0.85209 0.78974 0.77865 0.77208 1.19394 1.19768 1.18582 0.91045 0.92733 0.91148 0.85167 0.83139 0.82028 0.80260 0.83804 0.91500 0.95759 0.89992 1.00176 0.98178 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.63 8.36 71.24 0.60 -3.03 16 2 C -0.05 -1.14 5.86 -19.87 -0.12 -1.26 16 3 C -0.16 -3.22 9.70 22.27 0.22 -3.00 16 4 C -0.08 -1.24 10.05 22.27 0.22 -1.02 16 5 C -0.15 -1.84 10.05 22.27 0.22 -1.62 16 6 C -0.03 -0.48 9.75 22.27 0.22 -0.26 16 7 C -0.48 -10.34 5.59 22.27 0.12 -10.21 16 8 S 1.41 31.46 13.03 -56.49 -0.74 30.73 16 9 O -0.90 -30.62 14.19 -148.98 -2.11 -32.73 16 10 C -0.45 -13.24 6.14 71.98 0.44 -12.80 16 11 C 0.07 2.64 5.95 71.98 0.43 3.07 16 12 O -0.41 -20.92 10.33 -148.98 -1.54 -22.46 16 13 C 0.20 11.81 5.69 71.23 0.41 12.22 16 14 C -0.56 -33.85 9.43 25.60 0.24 -33.61 16 15 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 16 C 0.01 0.43 5.46 84.66 0.46 0.90 16 17 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 18 Si 0.99 44.69 29.54 68.60 2.03 46.72 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 22 H 0.07 2.17 7.98 -2.39 -0.02 2.15 16 23 H 0.05 1.84 5.02 -2.39 -0.01 1.83 16 24 H 0.07 1.77 8.09 -2.39 -0.02 1.76 16 25 H 0.13 2.28 8.06 -2.91 -0.02 2.25 16 26 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 27 H 0.16 0.92 8.06 -2.91 -0.02 0.90 16 28 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 29 H 0.14 3.44 8.14 -2.39 -0.02 3.42 16 30 H 0.07 2.29 7.48 -2.39 -0.02 2.27 16 31 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 33 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 34 H 0.00 0.03 8.14 -2.38 -0.02 0.01 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -82.44 311.36 2.45 -79.98 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: 1.07 Total: 4.43 kcal Atomic # 6 Polarization: -54.10 SS G_CDS: 3.46 Total: -50.64 kcal Atomic # 7 Polarization: -56.31 SS G_CDS: 0.28 Total: -56.02 kcal Atomic # 8 Polarization: -51.54 SS G_CDS: -3.65 Total: -55.19 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 16 Polarization: 31.46 SS G_CDS: -0.74 Total: 30.73 kcal Total: -82.44 2.45 -79.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385324680.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.415 kcal (2) G-P(sol) polarization free energy of solvation -82.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds