Wall clock time and date at job start Mon Mar 30 2020 08:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47244 * 270.00127 * 3 2 1 5 5 H 1.48498 * 109.46892 * 30.00273 * 3 2 1 6 6 H 1.48505 * 109.47545 * 150.00110 * 3 2 1 7 7 C 1.37876 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00060 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00303 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46715 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46952 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47113 * 180.02562 * 12 11 10 14 14 C 1.42903 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 12 16 16 C 1.38241 * 119.98648 * 269.72641 * 15 14 13 17 17 C 1.38215 * 120.00743 * 179.72780 * 16 15 14 18 18 C 1.38349 * 119.98879 * 0.54512 * 17 16 15 19 19 Cl 1.73606 * 120.01120 * 179.70588 * 18 17 16 20 20 C 1.38346 * 119.97570 * 359.73013 * 18 17 16 21 21 C 1.38215 * 119.98756 * 359.97438 * 20 18 17 22 22 H 0.96996 * 120.00433 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46829 * 60.00281 * 9 7 2 24 24 H 1.08994 * 109.46889 * 300.00411 * 9 7 2 25 25 H 1.08996 * 109.47060 * 60.00398 * 10 9 7 26 26 H 1.08995 * 109.47115 * 300.00284 * 10 9 7 27 27 H 1.08997 * 109.47562 * 60.00593 * 11 10 9 28 28 H 1.08998 * 109.47270 * 299.99509 * 11 10 9 29 29 H 1.09007 * 109.46516 * 59.99962 * 12 11 10 30 30 H 1.09004 * 109.47113 * 300.00431 * 12 11 10 31 31 H 1.09002 * 109.47382 * 59.99956 * 14 13 12 32 32 H 1.09001 * 109.46938 * 299.99942 * 14 13 12 33 33 H 1.07995 * 119.99451 * 359.97438 * 16 15 14 34 34 H 1.07999 * 120.00426 * 180.27387 * 17 16 15 35 35 H 1.08006 * 120.01050 * 179.97438 * 20 18 17 36 36 H 1.07995 * 119.99616 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5516 -2.6363 -0.0022 12 6 6.0618 -4.0788 -0.0028 13 8 7.4908 -4.0787 -0.0021 14 6 8.0720 -5.3842 -0.0031 15 6 9.5743 -5.2651 -0.0029 16 6 10.2636 -5.2153 -1.2002 17 6 11.6410 -5.1004 -1.2006 18 6 12.3307 -5.0467 -0.0025 19 17 14.0614 -4.9101 -0.0023 20 6 11.6408 -5.1023 1.1954 21 6 10.2630 -5.2110 1.1946 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6799 -0.8911 25 1 3.6581 -3.1496 -0.8925 26 1 3.6587 -3.1509 0.8874 27 1 5.9150 -2.1233 0.8882 28 1 5.9150 -2.1218 -0.8918 29 1 5.6984 -4.5923 -0.8930 30 1 5.6984 -4.5930 0.8870 31 1 7.7508 -5.9243 -0.8937 32 1 7.7500 -5.9260 0.8862 33 1 9.7254 -5.2621 -2.1354 34 1 12.1790 -5.0570 -2.1360 35 1 12.1788 -5.0608 2.1310 36 1 9.7243 -5.2549 2.1296 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385397079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:20:09 Heat of formation + Delta-G solvation = -53.376585 kcal Electronic energy + Delta-G solvation = -16685.287655 eV Core-core repulsion = 13773.426801 eV Total energy + Delta-G solvation = -2911.860854 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.82592 -37.94094 -36.77683 -34.79869 -32.56295 -31.77828 -31.44247 -29.17676 -26.27501 -24.60945 -23.21892 -21.83139 -21.45430 -20.06583 -17.53066 -16.68811 -16.46499 -16.41973 -15.85600 -15.49153 -14.53317 -14.16105 -14.12566 -13.85392 -13.81169 -13.16948 -12.63648 -12.60181 -12.09629 -11.86817 -11.79346 -11.66015 -11.31523 -11.26021 -11.16058 -10.72546 -10.66214 -9.90685 -9.71630 -9.61296 -9.59203 -9.39804 -9.16849 -8.99986 -8.52339 -6.03073 -4.00997 0.69926 0.93598 1.76265 3.12292 3.32623 3.39865 3.44570 3.86175 4.37124 4.47058 4.50966 4.60535 4.83516 4.93673 5.14365 5.20823 5.28426 5.32020 5.33637 5.40877 5.58398 5.64756 5.83196 5.84769 5.96871 5.98560 6.18165 6.32743 6.40900 6.61672 6.71389 6.88843 7.20212 7.32398 7.45402 7.81221 8.55280 9.01674 9.59753 11.10393 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.038492 B = 0.002449 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.252804 B =11430.421618 C =11831.741757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.071 0.929 9 C -0.014 4.014 10 C -0.100 4.100 11 C -0.119 4.119 12 C 0.062 3.938 13 O -0.384 6.384 14 C 0.100 3.900 15 C -0.081 4.081 16 C -0.086 4.086 17 C -0.114 4.114 18 C -0.032 4.032 19 Cl -0.074 7.074 20 C -0.114 4.114 21 C -0.086 4.086 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.012 0.988 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.049 0.951 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.807 -13.568 0.016 29.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.136 4.136 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.051 4.051 10 C -0.137 4.137 11 C -0.157 4.157 12 C -0.014 4.014 13 O -0.303 6.303 14 C 0.023 3.977 15 C -0.081 4.081 16 C -0.104 4.104 17 C -0.132 4.132 18 C -0.058 4.058 19 Cl -0.045 7.045 20 C -0.132 4.132 21 C -0.104 4.104 22 H 0.072 0.928 23 H 0.034 0.966 24 H 0.030 0.970 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.152 0.848 34 H 0.152 0.848 35 H 0.152 0.848 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 25.908 -13.271 0.019 29.109 hybrid contribution 0.338 0.710 -0.024 0.786 sum 26.246 -12.561 -0.005 29.097 Atomic orbital electron populations 1.69915 1.06309 1.26871 1.51311 1.25048 0.94751 0.99245 0.94593 0.86761 0.80384 0.83529 0.78520 1.20304 1.21427 1.18946 1.21167 0.89588 0.94434 1.50675 0.91084 1.19569 0.97016 0.92218 0.96340 1.21398 0.90985 1.00189 1.01175 1.21672 0.97484 0.93763 1.02746 1.22712 0.79220 0.99414 1.00054 1.87973 1.20807 1.26113 1.95444 1.21274 0.88905 0.86313 1.01209 1.19795 0.94928 1.00013 0.93367 1.21075 0.93237 0.97887 0.98246 1.21057 0.94285 1.00904 0.96993 1.20987 0.84623 1.04888 0.95344 1.98375 1.10730 1.96399 1.98972 1.21058 0.94276 1.00915 0.96996 1.21076 0.93230 0.97878 0.98252 0.92771 0.96564 0.97009 0.92702 0.92682 0.91673 0.91674 0.93308 0.93312 0.92284 0.92276 0.84789 0.84764 0.84763 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 2 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 22.02 27.47 -169.99 -4.67 17.35 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.52 -15.01 9.66 -34.44 -0.33 -15.34 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.34 4.04 -27.88 -0.11 -0.45 16 10 C -0.10 -1.95 5.15 -26.73 -0.14 -2.08 16 11 C -0.12 -1.94 5.58 -26.73 -0.15 -2.09 16 12 C 0.06 0.84 5.94 37.16 0.22 1.06 16 13 O -0.38 -5.20 10.33 -35.23 -0.36 -5.56 16 14 C 0.10 1.00 6.06 36.01 0.22 1.22 16 15 C -0.08 -0.79 5.51 -104.62 -0.58 -1.37 16 16 C -0.09 -0.77 9.70 -39.59 -0.38 -1.16 16 17 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16 18 C -0.03 -0.29 6.32 -39.50 -0.25 -0.54 16 19 Cl -0.07 -0.62 28.96 -51.86 -1.50 -2.12 16 20 C -0.11 -0.98 9.83 -39.55 -0.39 -1.37 16 21 C -0.09 -0.77 9.70 -39.59 -0.38 -1.16 16 22 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 23 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 24 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 25 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 27 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 28 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 33 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 36 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -31.51 322.59 -9.08 -40.60 By element: Atomic # 1 Polarization: 0.53 SS G_CDS: -5.42 Total: -4.89 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.76 Total: -22.84 kcal Atomic # 7 Polarization: -28.17 SS G_CDS: 0.77 Total: -27.40 kcal Atomic # 8 Polarization: -5.20 SS G_CDS: -0.36 Total: -5.56 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.67 Total: 17.35 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.51 -9.08 -40.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385397079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.781 kcal (2) G-P(sol) polarization free energy of solvation -31.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds