Wall clock time and date at job start Mon Mar 30 2020 08:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 119.99925 * 2 1 4 4 H 1.48497 * 109.47244 * 270.00127 * 3 2 1 5 5 H 1.48498 * 109.46892 * 30.00273 * 3 2 1 6 6 H 1.48505 * 109.47545 * 150.00110 * 3 2 1 7 7 C 1.37876 * 120.00481 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00060 * 0.02562 * 7 2 1 9 9 C 1.50706 * 120.00303 * 179.97438 * 7 2 1 10 10 C 1.53001 * 109.47119 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.46715 * 180.02562 * 10 9 7 12 12 C 1.53009 * 109.46952 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47113 * 180.02562 * 12 11 10 14 14 C 1.42903 * 113.99629 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46878 * 179.97438 * 14 13 12 16 16 C 1.38241 * 119.98648 * 269.72641 * 15 14 13 17 17 C 1.38215 * 120.00743 * 179.72780 * 16 15 14 18 18 C 1.38349 * 119.98879 * 0.54512 * 17 16 15 19 19 Cl 1.73606 * 120.01120 * 179.70588 * 18 17 16 20 20 C 1.38346 * 119.97570 * 359.73013 * 18 17 16 21 21 C 1.38215 * 119.98756 * 359.97438 * 20 18 17 22 22 H 0.96996 * 120.00433 * 359.97438 * 1 2 3 23 23 H 1.08996 * 109.46829 * 60.00281 * 9 7 2 24 24 H 1.08994 * 109.46889 * 300.00411 * 9 7 2 25 25 H 1.08996 * 109.47060 * 60.00398 * 10 9 7 26 26 H 1.08995 * 109.47115 * 300.00284 * 10 9 7 27 27 H 1.08997 * 109.47562 * 60.00593 * 11 10 9 28 28 H 1.08998 * 109.47270 * 299.99509 * 11 10 9 29 29 H 1.09007 * 109.46516 * 59.99962 * 12 11 10 30 30 H 1.09004 * 109.47113 * 300.00431 * 12 11 10 31 31 H 1.09002 * 109.47382 * 59.99956 * 14 13 12 32 32 H 1.09001 * 109.46938 * 299.99942 * 14 13 12 33 33 H 1.07995 * 119.99451 * 359.97438 * 16 15 14 34 34 H 1.07999 * 120.00426 * 180.27387 * 17 16 15 35 35 H 1.08006 * 120.01050 * 179.97438 * 20 18 17 36 36 H 1.07995 * 119.99616 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0014 9 6 3.5116 -1.1939 -0.0011 10 6 4.0217 -2.6364 -0.0023 11 6 5.5516 -2.6363 -0.0022 12 6 6.0618 -4.0788 -0.0028 13 8 7.4908 -4.0787 -0.0021 14 6 8.0720 -5.3842 -0.0031 15 6 9.5743 -5.2651 -0.0029 16 6 10.2636 -5.2153 -1.2002 17 6 11.6410 -5.1004 -1.2006 18 6 12.3307 -5.0467 -0.0025 19 17 14.0614 -4.9101 -0.0023 20 6 11.6408 -5.1023 1.1954 21 6 10.2630 -5.2110 1.1946 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6803 0.8888 24 1 3.8745 -0.6799 -0.8911 25 1 3.6581 -3.1496 -0.8925 26 1 3.6587 -3.1509 0.8874 27 1 5.9150 -2.1233 0.8882 28 1 5.9150 -2.1218 -0.8918 29 1 5.6984 -4.5923 -0.8930 30 1 5.6984 -4.5930 0.8870 31 1 7.7508 -5.9243 -0.8937 32 1 7.7500 -5.9260 0.8862 33 1 9.7254 -5.2621 -2.1354 34 1 12.1790 -5.0570 -2.1360 35 1 12.1788 -5.0608 2.1310 36 1 9.7243 -5.2549 2.1296 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385397079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:20:07 Heat of formation + Delta-G solvation = -70.248071 kcal Electronic energy + Delta-G solvation = -16686.019257 eV Core-core repulsion = 13773.426801 eV Total energy + Delta-G solvation = -2912.592457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.49926 -38.87448 -37.46019 -36.41314 -34.42226 -32.76760 -32.07376 -30.79333 -27.29443 -26.07368 -23.85395 -23.10308 -22.43780 -21.69697 -18.86579 -18.17089 -17.40198 -17.34196 -16.62058 -16.42970 -16.27313 -15.40274 -15.22130 -14.79021 -14.49002 -14.47234 -13.99611 -13.85560 -13.78404 -13.02769 -12.93762 -12.54274 -12.52332 -12.37476 -12.16567 -11.94486 -11.80073 -11.74115 -11.43779 -11.37464 -11.27256 -10.75862 -10.54990 -10.03770 -9.68814 -8.29138 -6.33052 0.01914 0.29751 1.10864 1.36593 1.38251 1.50739 2.36873 2.39645 3.01896 3.06234 3.75240 3.81759 3.93277 4.09333 4.19480 4.23470 4.30326 4.46486 4.50274 4.57061 4.62964 4.63165 4.70106 4.86947 4.97545 5.12924 5.14531 5.17560 5.20941 5.21239 5.51992 5.55807 5.63775 5.68208 5.77418 6.25031 6.30123 6.75157 7.31771 8.87563 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.038492 B = 0.002449 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.252804 B =11430.421618 C =11831.741757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.001 3.999 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.533 4.533 8 H 0.033 0.967 9 C -0.014 4.014 10 C -0.092 4.092 11 C -0.111 4.111 12 C 0.068 3.932 13 O -0.403 6.403 14 C 0.096 3.904 15 C -0.097 4.097 16 C -0.093 4.093 17 C -0.119 4.119 18 C -0.042 4.042 19 Cl -0.072 7.072 20 C -0.119 4.119 21 C -0.093 4.093 22 H 0.266 0.734 23 H 0.019 0.981 24 H 0.017 0.983 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.147 0.853 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.868 -13.398 -0.007 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.196 4.196 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.209 1.209 6 H -0.171 1.171 7 C -0.571 4.571 8 H 0.052 0.948 9 C -0.052 4.052 10 C -0.130 4.130 11 C -0.149 4.149 12 C -0.008 4.008 13 O -0.323 6.323 14 C 0.020 3.980 15 C -0.097 4.097 16 C -0.111 4.111 17 C -0.138 4.138 18 C -0.069 4.069 19 Cl -0.043 7.043 20 C -0.138 4.138 21 C -0.111 4.111 22 H 0.075 0.925 23 H 0.037 0.963 24 H 0.036 0.964 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.164 0.836 34 H 0.167 0.833 35 H 0.166 0.834 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 27.989 -13.123 -0.005 30.913 hybrid contribution -0.318 0.565 -0.018 0.648 sum 27.671 -12.558 -0.022 30.388 Atomic orbital electron populations 1.70067 1.08274 1.28150 1.52795 1.26055 0.95665 1.03642 0.94202 0.85632 0.79465 0.78180 0.79221 1.19150 1.20949 1.17081 1.21548 0.92259 0.93133 1.50185 0.94847 1.19553 0.93749 0.95390 0.96481 1.21240 0.93470 0.97173 1.01139 1.21482 0.94808 0.95980 1.02599 1.22531 0.79702 0.97417 1.01147 1.87919 1.20417 1.28340 1.95656 1.21454 0.88934 0.85024 1.02554 1.19927 0.94924 1.00881 0.93956 1.21285 0.93516 0.97641 0.98656 1.21271 0.94367 1.00544 0.97574 1.21170 0.84864 1.05068 0.95778 1.98373 1.10553 1.96396 1.98981 1.21271 0.94354 1.00556 0.97577 1.21286 0.93514 0.97645 0.98661 0.92516 0.96314 0.96426 0.92779 0.92809 0.91865 0.91783 0.92242 0.92274 0.90937 0.90940 0.83575 0.83349 0.83351 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.38 13.96 21.45 0.30 -60.08 16 2 C 0.00 0.05 5.47 84.66 0.46 0.51 16 3 Si 0.95 44.90 27.47 68.60 1.88 46.79 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 6 H -0.25 -10.88 6.54 99.48 0.65 -10.22 16 7 C -0.53 -31.16 9.66 25.60 0.25 -30.91 16 8 H 0.03 2.13 7.99 -2.91 -0.02 2.11 16 9 C -0.01 -0.68 4.04 29.85 0.12 -0.56 16 10 C -0.09 -3.51 5.15 30.59 0.16 -3.35 16 11 C -0.11 -3.41 5.58 30.60 0.17 -3.24 16 12 C 0.07 1.69 5.94 71.99 0.43 2.12 16 13 O -0.40 -10.02 10.33 -148.98 -1.54 -11.56 16 14 C 0.10 1.72 6.06 71.24 0.43 2.15 16 15 C -0.10 -1.72 5.51 -19.86 -0.11 -1.83 16 16 C -0.09 -1.51 9.70 22.27 0.22 -1.30 16 17 C -0.12 -1.87 9.83 22.29 0.22 -1.65 16 18 C -0.04 -0.70 6.32 22.32 0.14 -0.56 16 19 Cl -0.07 -1.12 28.96 -2.72 -0.08 -1.20 16 20 C -0.12 -1.87 9.83 22.29 0.22 -1.65 16 21 C -0.09 -1.52 9.70 22.27 0.22 -1.30 16 22 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 23 H 0.02 0.87 7.20 -2.39 -0.02 0.85 16 24 H 0.02 0.80 7.57 -2.39 -0.02 0.79 16 25 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 29 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.07 1.08 8.08 -2.39 -0.02 1.07 16 32 H 0.07 1.09 8.09 -2.39 -0.02 1.07 16 33 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 34 H 0.15 1.79 8.06 -2.91 -0.02 1.76 16 35 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 36 H 0.15 1.92 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -67.39 322.59 4.47 -62.92 By element: Atomic # 1 Polarization: 3.73 SS G_CDS: 0.99 Total: 4.72 kcal Atomic # 6 Polarization: -44.49 SS G_CDS: 2.92 Total: -41.57 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: 0.30 Total: -60.08 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -1.54 Total: -11.56 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.79 kcal Atomic # 17 Polarization: -1.12 SS G_CDS: -0.08 Total: -1.20 kcal Total: -67.39 4.47 -62.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385397079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.333 kcal (2) G-P(sol) polarization free energy of solvation -67.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds