Wall clock time and date at job start Mon Mar 30 2020 08:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48500 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46927 * 300.00184 * 3 2 1 6 6 H 1.48499 * 109.47192 * 59.99744 * 3 2 1 7 7 C 1.37877 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47018 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46996 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.35900 * 116.99823 * 179.97438 * 13 12 11 15 15 C 1.38731 * 120.05342 * 180.02562 * 14 13 12 16 16 C 1.38154 * 119.94058 * 180.02562 * 15 14 13 17 17 C 1.38261 * 120.05655 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.94251 * 179.97438 * 17 16 15 19 19 Cl 1.80300 * 109.47128 * 270.00257 * 18 17 16 20 20 C 1.38259 * 120.11397 * 0.25346 * 17 16 15 21 21 C 1.38153 * 120.05477 * 359.44983 * 20 17 16 22 22 H 0.97001 * 120.00587 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47144 * 60.00043 * 9 7 2 24 24 H 1.09006 * 109.46853 * 299.99614 * 9 7 2 25 25 H 1.09000 * 109.47039 * 59.99389 * 10 9 7 26 26 H 1.09002 * 109.46802 * 299.99989 * 10 9 7 27 27 H 1.08999 * 109.47280 * 60.00345 * 11 10 9 28 28 H 1.09002 * 109.47477 * 299.99748 * 11 10 9 29 29 H 1.09000 * 109.47039 * 59.99563 * 12 11 10 30 30 H 1.09002 * 109.46802 * 300.00162 * 12 11 10 31 31 H 1.07998 * 120.03388 * 0.02562 * 15 14 13 32 32 H 1.08005 * 119.97017 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47152 * 150.00085 * 18 17 16 34 34 H 1.09001 * 109.46980 * 30.00185 * 18 17 16 35 35 H 1.07997 * 119.97526 * 179.70243 * 20 17 16 36 36 H 1.07998 * 120.02796 * 180.24700 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0044 13 8 1.7600 -7.3875 0.0044 14 6 2.5002 -8.5273 0.0055 15 6 1.8715 -9.7640 0.0050 16 6 2.6263 -10.9211 0.0067 17 6 4.0069 -10.8474 0.0093 18 6 4.8277 -12.1113 0.0117 19 17 5.1517 -12.6143 1.7125 20 6 4.6358 -9.6161 0.0156 21 6 3.8857 -8.4560 0.0078 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8713 -3.6039 0.8922 26 1 2.8726 -3.6047 -0.8877 27 1 0.8540 -5.0455 -0.8878 28 1 0.8532 -5.0442 0.8922 29 1 3.1005 -6.0914 0.8948 30 1 3.1019 -6.0931 -0.8851 31 1 0.7931 -9.8222 0.0034 32 1 2.1374 -11.8842 0.0059 33 1 5.7730 -11.9316 -0.5004 34 1 4.2802 -12.9010 -0.5028 35 1 5.7144 -9.5611 0.0225 36 1 4.3774 -7.4945 0.0087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385400570.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:17:44 Heat of formation + Delta-G solvation = -55.614717 kcal Electronic energy + Delta-G solvation = -16799.336029 eV Core-core repulsion = 13887.378122 eV Total energy + Delta-G solvation = -2911.957907 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.29051 -38.01236 -36.15624 -34.82086 -32.60594 -31.71960 -31.26673 -28.99529 -26.41615 -25.07104 -23.24956 -21.90891 -21.10972 -20.18483 -18.16741 -16.40029 -16.17418 -16.06772 -15.86134 -14.76891 -14.69753 -14.48862 -14.11904 -14.08064 -13.71374 -13.16925 -12.61535 -12.56455 -12.32996 -11.86274 -11.64516 -11.52684 -11.03977 -10.95654 -10.76584 -10.70143 -10.56123 -10.48219 -10.47899 -9.74526 -9.39434 -9.23619 -9.08680 -8.37373 -8.29682 -6.01916 -4.04607 0.92936 1.12400 2.19025 3.18418 3.29579 3.37132 3.41045 3.58870 4.28869 4.38840 4.44344 4.65225 4.76359 4.93999 5.09851 5.14036 5.17539 5.30999 5.33988 5.42822 5.52181 5.76842 5.93606 5.95185 6.06902 6.14875 6.25056 6.35510 6.54711 6.66081 6.81088 7.04405 7.38019 7.65278 7.78658 7.97912 8.39693 9.02735 9.59648 11.09456 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.049670 B = 0.002413 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.580517 B =11601.915373 C =11958.202574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.107 4.107 11 C -0.117 4.117 12 C 0.058 3.942 13 O -0.313 6.313 14 C 0.150 3.850 15 C -0.158 4.158 16 C -0.059 4.059 17 C -0.159 4.159 18 C 0.018 3.982 19 Cl -0.186 7.186 20 C -0.056 4.056 21 C -0.212 4.212 22 H 0.260 0.740 23 H 0.017 0.983 24 H 0.017 0.983 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.550 -24.811 -0.926 26.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.145 4.145 11 C -0.155 4.155 12 C -0.016 4.016 13 O -0.226 6.226 14 C 0.103 3.897 15 C -0.177 4.177 16 C -0.077 4.077 17 C -0.159 4.159 18 C -0.044 4.044 19 Cl -0.159 7.159 20 C -0.075 4.075 21 C -0.230 4.230 22 H 0.070 0.930 23 H 0.035 0.965 24 H 0.036 0.964 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.147 0.853 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.143 0.857 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.221 -24.692 -0.801 26.037 hybrid contribution 0.657 1.080 0.072 1.266 sum 8.878 -23.612 -0.728 25.237 Atomic orbital electron populations 1.69970 1.06064 1.26533 1.50855 1.25038 0.94860 0.99314 0.95335 0.86538 0.80085 0.83783 0.77603 1.19752 1.21000 1.20987 1.21285 0.93057 0.91063 1.50557 0.92636 1.19096 0.93960 0.91120 0.97434 1.21585 0.99273 0.93068 1.00532 1.21706 0.98024 0.92471 1.03283 1.23135 0.96113 0.81200 1.01167 1.86130 1.36132 1.12942 1.87370 1.19197 0.90092 0.87111 0.93287 1.20455 1.00746 0.89497 1.06975 1.20794 0.92651 0.97905 0.96398 1.19533 0.93971 0.93881 1.08561 1.23070 1.01596 0.96199 0.83545 1.98741 1.96551 1.92533 1.28098 1.20802 0.99708 0.91142 0.95812 1.21337 0.92969 0.99864 1.08874 0.93018 0.96451 0.96449 0.93119 0.93128 0.91263 0.91255 0.92020 0.92048 0.84871 0.85307 0.88296 0.88256 0.85658 0.84907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 10 C -0.11 -2.12 5.15 -26.73 -0.14 -2.26 16 11 C -0.12 -1.96 5.58 -26.73 -0.15 -2.11 16 12 C 0.06 0.82 4.74 37.16 0.18 0.99 16 13 O -0.31 -4.54 10.14 -19.43 -0.20 -4.74 16 14 C 0.15 1.90 6.69 -39.22 -0.26 1.64 16 15 C -0.16 -1.73 9.99 -39.43 -0.39 -2.13 16 16 C -0.06 -0.54 9.69 -39.60 -0.38 -0.92 16 17 C -0.16 -1.39 5.26 -104.60 -0.55 -1.94 16 18 C 0.02 0.12 6.78 36.01 0.24 0.36 16 19 Cl -0.19 -1.63 29.13 -51.86 -1.51 -3.14 16 20 C -0.06 -0.53 9.69 -39.61 -0.38 -0.92 16 21 C -0.21 -2.37 9.04 -39.43 -0.36 -2.73 16 22 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 25 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.06 0.80 7.66 -51.93 -0.40 0.41 16 30 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 33 H 0.10 0.49 8.09 -51.93 -0.42 0.07 16 34 H 0.10 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.51 16 36 H 0.13 1.38 6.30 -52.49 -0.33 1.05 16 LS Contribution 322.44 15.07 4.86 4.86 Total: -1.00 -30.81 322.44 -9.19 -40.00 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.31 Total: -4.20 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: -2.75 Total: -23.14 kcal Atomic # 7 Polarization: -26.95 SS G_CDS: 0.74 Total: -26.21 kcal Atomic # 8 Polarization: -4.54 SS G_CDS: -0.20 Total: -4.74 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -1.51 Total: -3.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.81 -9.19 -40.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385400570.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.612 kcal (2) G-P(sol) polarization free energy of solvation -30.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds