Wall clock time and date at job start Mon Mar 30 2020 08:17:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00041 * 2 1 4 4 H 1.48500 * 109.47030 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.46927 * 300.00184 * 3 2 1 6 6 H 1.48499 * 109.47192 * 59.99744 * 3 2 1 7 7 C 1.37877 * 120.00215 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00118 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99679 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47018 * 180.02562 * 9 7 2 11 11 C 1.52995 * 109.46996 * 179.97438 * 10 9 7 12 12 C 1.53005 * 109.46996 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.35900 * 116.99823 * 179.97438 * 13 12 11 15 15 C 1.38731 * 120.05342 * 180.02562 * 14 13 12 16 16 C 1.38154 * 119.94058 * 180.02562 * 15 14 13 17 17 C 1.38261 * 120.05655 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.94251 * 179.97438 * 17 16 15 19 19 Cl 1.80300 * 109.47128 * 270.00257 * 18 17 16 20 20 C 1.38259 * 120.11397 * 0.25346 * 17 16 15 21 21 C 1.38153 * 120.05477 * 359.44983 * 20 17 16 22 22 H 0.97001 * 120.00587 * 0.02562 * 1 2 3 23 23 H 1.08992 * 109.47144 * 60.00043 * 9 7 2 24 24 H 1.09006 * 109.46853 * 299.99614 * 9 7 2 25 25 H 1.09000 * 109.47039 * 59.99389 * 10 9 7 26 26 H 1.09002 * 109.46802 * 299.99989 * 10 9 7 27 27 H 1.08999 * 109.47280 * 60.00345 * 11 10 9 28 28 H 1.09002 * 109.47477 * 299.99748 * 11 10 9 29 29 H 1.09000 * 109.47039 * 59.99563 * 12 11 10 30 30 H 1.09002 * 109.46802 * 300.00162 * 12 11 10 31 31 H 1.07998 * 120.03388 * 0.02562 * 15 14 13 32 32 H 1.08005 * 119.97017 * 180.02562 * 16 15 14 33 33 H 1.09002 * 109.47152 * 150.00085 * 18 17 16 34 34 H 1.09001 * 109.46980 * 30.00185 * 18 17 16 35 35 H 1.07997 * 119.97526 * 179.70243 * 20 17 16 36 36 H 1.07998 * 120.02796 * 180.24700 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 6 2.2452 -3.6621 0.0018 11 6 1.4802 -4.9871 0.0025 12 6 2.4745 -6.1500 0.0044 13 8 1.7600 -7.3875 0.0044 14 6 2.5002 -8.5273 0.0055 15 6 1.8715 -9.7640 0.0050 16 6 2.6263 -10.9211 0.0067 17 6 4.0069 -10.8474 0.0093 18 6 4.8277 -12.1113 0.0117 19 17 5.1517 -12.6143 1.7125 20 6 4.6358 -9.6161 0.0156 21 6 3.8857 -8.4560 0.0078 22 1 -0.4851 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8896 24 1 0.6240 -2.5567 0.8904 25 1 2.8713 -3.6039 0.8922 26 1 2.8726 -3.6047 -0.8877 27 1 0.8540 -5.0455 -0.8878 28 1 0.8532 -5.0442 0.8922 29 1 3.1005 -6.0914 0.8948 30 1 3.1019 -6.0931 -0.8851 31 1 0.7931 -9.8222 0.0034 32 1 2.1374 -11.8842 0.0059 33 1 5.7730 -11.9316 -0.5004 34 1 4.2802 -12.9010 -0.5028 35 1 5.7144 -9.5611 0.0225 36 1 4.3774 -7.4945 0.0087 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385400570.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:17:44 Heat of formation + Delta-G solvation = -71.166984 kcal Electronic energy + Delta-G solvation = -16800.010426 eV Core-core repulsion = 13887.378122 eV Total energy + Delta-G solvation = -2912.632304 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.16487 -38.89791 -36.82372 -36.46657 -34.46710 -32.62587 -32.02909 -30.63711 -27.40575 -26.50313 -24.43565 -23.11198 -22.03888 -21.79516 -19.11714 -18.45200 -17.31288 -17.07621 -16.59350 -16.47229 -15.65960 -15.43015 -15.23709 -14.95739 -14.57029 -14.37786 -13.96114 -13.80654 -13.64112 -13.18726 -12.97346 -12.94403 -12.61793 -12.35465 -12.32533 -11.78205 -11.75137 -11.41979 -11.37529 -11.35898 -11.26921 -11.12971 -10.56994 -9.99366 -9.13988 -8.20893 -6.32282 0.17821 0.36413 1.40184 1.40317 1.53785 1.59763 2.18204 2.41356 2.83816 3.12442 3.66524 3.75215 3.91564 3.95106 3.97707 4.19983 4.30417 4.33279 4.42771 4.51792 4.56782 4.65176 4.75883 4.78386 5.04877 5.08568 5.20072 5.22520 5.26650 5.37643 5.52011 5.52373 5.73317 5.79159 5.84903 6.23133 6.42906 6.85541 7.37291 8.91345 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.049670 B = 0.002413 C = 0.002341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 563.580517 B =11601.915373 C =11958.202574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.021 3.979 10 C -0.093 4.093 11 C -0.110 4.110 12 C 0.068 3.932 13 O -0.333 6.333 14 C 0.119 3.881 15 C -0.171 4.171 16 C -0.058 4.058 17 C -0.155 4.155 18 C 0.022 3.978 19 Cl -0.205 7.205 20 C -0.061 4.061 21 C -0.221 4.221 22 H 0.263 0.737 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.119 0.881 34 H 0.121 0.879 35 H 0.147 0.853 36 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.631 -25.971 -1.212 28.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.202 4.202 3 Si 0.791 3.209 4 H -0.184 1.184 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.016 4.016 10 C -0.131 4.131 11 C -0.147 4.147 12 C -0.006 4.006 13 O -0.248 6.248 14 C 0.073 3.927 15 C -0.189 4.189 16 C -0.076 4.076 17 C -0.156 4.156 18 C -0.040 4.040 19 Cl -0.179 7.179 20 C -0.079 4.079 21 C -0.240 4.240 22 H 0.072 0.928 23 H 0.010 0.990 24 H 0.009 0.991 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 10.315 -25.876 -1.087 27.877 hybrid contribution -0.013 1.341 0.142 1.348 sum 10.302 -24.535 -0.946 26.627 Atomic orbital electron populations 1.70108 1.07890 1.27737 1.51805 1.26033 0.95797 1.03559 0.94791 0.85370 0.79129 0.78625 0.77742 1.18373 1.20408 1.20440 1.21752 0.93675 0.92295 1.50314 0.91871 1.19032 0.94537 0.93178 0.94882 1.21345 0.98067 0.92324 1.01363 1.21490 0.98210 0.92478 1.02572 1.22892 0.94980 0.80421 1.02335 1.86055 1.36953 1.13474 1.88273 1.19479 0.90880 0.86807 0.95509 1.20676 1.01281 0.89689 1.07283 1.21116 0.92972 0.98271 0.95272 1.19842 0.94146 0.94692 1.06878 1.23271 1.02621 0.95672 0.82400 1.98746 1.96620 1.92607 1.29893 1.21109 1.00801 0.90872 0.95102 1.21483 0.92521 1.00870 1.09108 0.92779 0.99017 0.99093 0.92262 0.92150 0.91970 0.92103 0.90965 0.90755 0.84640 0.82804 0.86311 0.86025 0.83561 0.84502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 2 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 3 Si 0.97 44.26 29.54 68.60 2.03 46.28 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 5 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 6 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 8 H 0.06 3.42 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.10 4.97 29.85 0.15 1.25 16 10 C -0.09 -3.71 5.15 30.59 0.16 -3.55 16 11 C -0.11 -3.72 5.58 30.59 0.17 -3.55 16 12 C 0.07 1.87 4.74 71.98 0.34 2.21 16 13 O -0.33 -9.71 10.14 -92.42 -0.94 -10.65 16 14 C 0.12 2.95 6.69 22.51 0.15 3.11 16 15 C -0.17 -3.61 9.99 22.37 0.22 -3.39 16 16 C -0.06 -0.93 9.69 22.26 0.22 -0.72 16 17 C -0.16 -2.31 5.26 -19.85 -0.10 -2.41 16 18 C 0.02 0.21 6.78 71.24 0.48 0.70 16 19 Cl -0.20 -3.14 29.13 -2.72 -0.08 -3.21 16 20 C -0.06 -1.02 9.69 22.25 0.22 -0.80 16 21 C -0.22 -4.68 9.04 22.37 0.20 -4.48 16 22 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 23 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 24 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 25 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 29 H 0.07 1.81 7.66 -2.39 -0.02 1.79 16 30 H 0.07 1.83 7.66 -2.39 -0.02 1.81 16 31 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 32 H 0.15 1.61 8.06 -2.91 -0.02 1.58 16 33 H 0.12 0.72 8.09 -2.39 -0.02 0.70 16 34 H 0.12 0.67 8.08 -2.39 -0.02 0.65 16 35 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 36 H 0.14 2.66 6.30 -2.91 -0.02 2.65 16 Total: -1.00 -67.09 322.44 5.24 -61.85 By element: Atomic # 1 Polarization: 3.95 SS G_CDS: 1.05 Total: 4.99 kcal Atomic # 6 Polarization: -44.97 SS G_CDS: 2.90 Total: -42.07 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: 0.28 Total: -57.19 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: -0.94 Total: -10.65 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Atomic # 17 Polarization: -3.14 SS G_CDS: -0.08 Total: -3.21 kcal Total: -67.09 5.24 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385400570.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.318 kcal (2) G-P(sol) polarization free energy of solvation -67.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds