Wall clock time and date at job start Mon Mar 30 2020 08:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99890 * 2 1 4 4 H 1.48497 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47265 * 299.99947 * 3 2 1 6 6 H 1.48496 * 109.47616 * 59.99885 * 3 2 1 7 7 C 1.37873 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47076 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46939 * 180.02562 * 12 11 10 14 14 C 1.42897 * 113.99682 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47121 * 179.97438 * 14 13 12 16 16 C 1.38237 * 120.00455 * 359.97438 * 15 14 13 17 17 C 1.38224 * 120.01313 * 179.74163 * 16 15 14 18 18 C 1.38264 * 120.02445 * 0.26351 * 17 16 15 19 19 C 1.38190 * 120.01695 * 0.02562 * 18 17 16 20 20 C 1.38328 * 120.01174 * 180.27602 * 15 14 13 21 21 Cl 1.73603 * 120.01189 * 0.02562 * 20 15 14 22 22 H 0.96997 * 120.00157 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46621 * 60.00465 * 9 7 2 24 24 H 1.08993 * 109.47243 * 300.00709 * 9 7 2 25 25 H 1.09005 * 109.46982 * 60.00698 * 10 9 7 26 26 H 1.08993 * 109.47649 * 300.00473 * 10 9 7 27 27 H 1.08997 * 109.47047 * 60.00063 * 11 10 9 28 28 H 1.09001 * 109.46866 * 300.00272 * 11 10 9 29 29 H 1.08997 * 109.47455 * 59.99917 * 12 11 10 30 30 H 1.09001 * 109.47171 * 299.99687 * 12 11 10 31 31 H 1.09001 * 109.47188 * 60.00301 * 14 13 12 32 32 H 1.08995 * 109.47519 * 299.99852 * 14 13 12 33 33 H 1.08002 * 119.99593 * 0.02780 * 16 15 14 34 34 H 1.07996 * 119.98813 * 180.23496 * 17 16 15 35 35 H 1.08004 * 119.98845 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.00844 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 8 1.7601 -7.3875 -0.0043 14 6 2.6001 -8.5435 -0.0056 15 6 1.7460 -9.7851 -0.0061 16 6 0.3680 -9.6762 -0.0049 17 6 -0.4156 -10.8148 -0.0108 18 6 0.1783 -12.0634 -0.0125 19 6 1.5558 -12.1736 -0.0077 20 6 2.3407 -11.0340 -0.0016 21 17 4.0713 -11.1717 0.0054 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6247 -2.5571 0.8895 25 1 2.8726 -3.6047 0.8878 26 1 2.8714 -3.6039 -0.8921 27 1 0.8533 -5.0442 -0.8922 28 1 0.8541 -5.0454 0.8877 29 1 3.1014 -6.0927 0.8868 30 1 3.1012 -6.0918 -0.8931 31 1 3.2294 -8.5364 0.8844 32 1 3.2293 -8.5346 -0.8956 33 1 -0.0966 -8.7012 -0.0040 34 1 -1.4922 -10.7292 -0.0137 35 1 -0.4345 -12.9527 -0.0167 36 1 2.0196 -13.1490 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385404986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:20:15 Heat of formation + Delta-G solvation = -56.554587 kcal Electronic energy + Delta-G solvation = -16871.164106 eV Core-core repulsion = 13959.165443 eV Total energy + Delta-G solvation = -2911.998663 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.77309 -37.82805 -36.71984 -34.69233 -32.67134 -31.82114 -30.98457 -28.72854 -26.29026 -24.62606 -22.89828 -21.77309 -21.59574 -20.04491 -17.43454 -16.61809 -16.23317 -16.22785 -15.70048 -15.00147 -14.54788 -14.49836 -14.31578 -14.02385 -13.57573 -12.81193 -12.44760 -12.38343 -11.93493 -11.79150 -11.72973 -11.57278 -11.14439 -11.12326 -10.95964 -10.74524 -10.50997 -10.41052 -9.73333 -9.61645 -9.31627 -9.11895 -9.02932 -8.90078 -8.33474 -5.98297 -4.00614 0.84972 1.00826 1.83350 3.31899 3.35231 3.39212 3.43284 3.55017 4.46242 4.48597 4.63551 4.74215 5.03271 5.09842 5.22219 5.23149 5.37035 5.39397 5.42526 5.49979 5.68819 5.74371 5.92669 6.02004 6.10307 6.18014 6.21607 6.47007 6.54236 6.77905 6.91412 7.08828 7.29513 7.70384 7.84996 8.02442 8.44745 9.06975 9.63393 11.13151 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.039874 B = 0.002645 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.041153 B =10582.710294 C =11248.393476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.108 4.108 11 C -0.116 4.116 12 C 0.064 3.936 13 O -0.386 6.386 14 C 0.100 3.900 15 C -0.076 4.076 16 C -0.083 4.083 17 C -0.116 4.116 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.035 4.035 21 Cl -0.071 7.071 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.016 0.984 25 H 0.048 0.952 26 H 0.048 0.952 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.146 0.854 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.092 -25.944 -0.018 26.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.012 4.012 13 O -0.306 6.306 14 C 0.024 3.976 15 C -0.076 4.076 16 C -0.101 4.101 17 C -0.134 4.134 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.061 4.061 21 Cl -0.042 7.042 22 H 0.069 0.931 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.909 -25.841 -0.018 26.004 hybrid contribution 0.887 0.909 0.001 1.270 sum 3.796 -24.932 -0.017 25.219 Atomic orbital electron populations 1.69975 1.06054 1.26456 1.51030 1.25034 0.94853 0.99273 0.95402 0.86547 0.80104 0.83840 0.77567 1.19764 1.21023 1.21020 1.21310 0.93066 0.91137 1.50324 0.92668 1.19094 0.93995 0.91197 0.97331 1.21580 0.99202 0.93415 1.00353 1.21644 0.98078 0.92855 1.02789 1.22730 0.95487 0.83054 0.99960 1.87829 1.33680 1.13527 1.95533 1.21159 0.91645 0.83573 1.01235 1.19614 0.94855 0.92454 1.00719 1.21145 0.92080 0.99973 0.96900 1.21352 1.00560 0.92287 0.99188 1.21141 0.93896 0.98096 0.99956 1.20976 0.93691 0.97245 1.01201 1.20685 0.84575 0.94295 1.06590 1.98370 1.10681 1.98322 1.96870 0.93071 0.96529 0.96523 0.93300 0.93302 0.91636 0.91644 0.93385 0.93395 0.91586 0.91576 0.83658 0.85186 0.85162 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.24 13.29 55.43 0.74 -26.50 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.54 4.97 -27.88 -0.14 0.41 16 10 C -0.11 -2.22 5.15 -26.73 -0.14 -2.35 16 11 C -0.12 -2.02 5.58 -26.73 -0.15 -2.17 16 12 C 0.06 0.92 5.94 37.16 0.22 1.15 16 13 O -0.39 -5.49 8.82 -35.23 -0.31 -5.80 16 14 C 0.10 1.19 5.30 36.00 0.19 1.38 16 15 C -0.08 -0.86 5.88 -104.59 -0.62 -1.48 16 16 C -0.08 -0.91 9.38 -39.59 -0.37 -1.28 16 17 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 18 C -0.11 -0.88 10.05 -39.59 -0.40 -1.28 16 19 C -0.11 -0.97 9.83 -39.55 -0.39 -1.36 16 20 C -0.03 -0.36 6.31 -39.50 -0.25 -0.61 16 21 Cl -0.07 -0.69 27.99 -51.86 -1.45 -2.14 16 22 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 23 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 24 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.15 1.68 7.01 -52.49 -0.37 1.31 16 34 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 322.61 15.07 4.86 4.86 Total: -1.00 -30.72 322.61 -9.44 -40.16 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -5.40 Total: -4.66 kcal Atomic # 6 Polarization: -19.87 SS G_CDS: -2.85 Total: -22.72 kcal Atomic # 7 Polarization: -27.24 SS G_CDS: 0.74 Total: -26.50 kcal Atomic # 8 Polarization: -5.49 SS G_CDS: -0.31 Total: -5.80 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.45 Total: -2.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.72 -9.44 -40.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385404986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.397 kcal (2) G-P(sol) polarization free energy of solvation -30.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds