Wall clock time and date at job start Mon Mar 30 2020 08:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86798 * 119.99890 * 2 1 4 4 H 1.48497 * 109.47277 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47265 * 299.99947 * 3 2 1 6 6 H 1.48496 * 109.47616 * 59.99885 * 3 2 1 7 7 C 1.37873 * 120.00156 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00247 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00080 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47125 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47077 * 180.02562 * 10 9 7 12 12 C 1.53000 * 109.47076 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.46939 * 180.02562 * 12 11 10 14 14 C 1.42897 * 113.99682 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.47121 * 179.97438 * 14 13 12 16 16 C 1.38237 * 120.00455 * 359.97438 * 15 14 13 17 17 C 1.38224 * 120.01313 * 179.74163 * 16 15 14 18 18 C 1.38264 * 120.02445 * 0.26351 * 17 16 15 19 19 C 1.38190 * 120.01695 * 0.02562 * 18 17 16 20 20 C 1.38328 * 120.01174 * 180.27602 * 15 14 13 21 21 Cl 1.73603 * 120.01189 * 0.02562 * 20 15 14 22 22 H 0.96997 * 120.00157 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.46621 * 60.00465 * 9 7 2 24 24 H 1.08993 * 109.47243 * 300.00709 * 9 7 2 25 25 H 1.09005 * 109.46982 * 60.00698 * 10 9 7 26 26 H 1.08993 * 109.47649 * 300.00473 * 10 9 7 27 27 H 1.08997 * 109.47047 * 60.00063 * 11 10 9 28 28 H 1.09001 * 109.46866 * 300.00272 * 11 10 9 29 29 H 1.08997 * 109.47455 * 59.99917 * 12 11 10 30 30 H 1.09001 * 109.47171 * 299.99687 * 12 11 10 31 31 H 1.09001 * 109.47188 * 60.00301 * 14 13 12 32 32 H 1.08995 * 109.47519 * 299.99852 * 14 13 12 33 33 H 1.08002 * 119.99593 * 0.02780 * 16 15 14 34 34 H 1.07996 * 119.98813 * 180.23496 * 17 16 15 35 35 H 1.08004 * 119.98845 * 179.97438 * 18 17 16 36 36 H 1.08000 * 120.00844 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4804 -4.9871 -0.0025 12 6 2.4746 -6.1500 -0.0031 13 8 1.7601 -7.3875 -0.0043 14 6 2.6001 -8.5435 -0.0056 15 6 1.7460 -9.7851 -0.0061 16 6 0.3680 -9.6762 -0.0049 17 6 -0.4156 -10.8148 -0.0108 18 6 0.1783 -12.0634 -0.0125 19 6 1.5558 -12.1736 -0.0077 20 6 2.3407 -11.0340 -0.0016 21 17 4.0713 -11.1717 0.0054 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5566 -0.8904 24 1 0.6247 -2.5571 0.8895 25 1 2.8726 -3.6047 0.8878 26 1 2.8714 -3.6039 -0.8921 27 1 0.8533 -5.0442 -0.8922 28 1 0.8541 -5.0454 0.8877 29 1 3.1014 -6.0927 0.8868 30 1 3.1012 -6.0918 -0.8931 31 1 3.2294 -8.5364 0.8844 32 1 3.2293 -8.5346 -0.8956 33 1 -0.0966 -8.7012 -0.0040 34 1 -1.4922 -10.7292 -0.0137 35 1 -0.4345 -12.9527 -0.0167 36 1 2.0196 -13.1490 -0.0094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385404986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:20:14 Heat of formation + Delta-G solvation = -72.058575 kcal Electronic energy + Delta-G solvation = -16871.836409 eV Core-core repulsion = 13959.165443 eV Total energy + Delta-G solvation = -2912.670966 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 268.097 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.53426 -38.88658 -37.44954 -36.43467 -34.44339 -32.92677 -31.68544 -30.43850 -27.37043 -26.28604 -23.81326 -23.15121 -22.49778 -21.72124 -18.47849 -18.11349 -17.61414 -17.34701 -16.55272 -16.42514 -15.87336 -15.81372 -15.28227 -14.73513 -14.65096 -14.45779 -13.85714 -13.73466 -13.45839 -12.91355 -12.83416 -12.62110 -12.52212 -12.37821 -12.31752 -12.29179 -11.95249 -11.69859 -11.46578 -11.32458 -11.08527 -10.73874 -10.55979 -9.85004 -9.63893 -8.20087 -6.31470 0.13645 0.29361 1.09940 1.40276 1.40556 1.54099 2.39960 2.53310 2.64630 3.13016 3.69256 3.91678 4.06417 4.08656 4.15052 4.31428 4.36583 4.43032 4.44273 4.50097 4.62013 4.65055 4.72155 4.87284 4.98983 5.16918 5.23282 5.25927 5.28609 5.39017 5.49120 5.53858 5.76007 5.85748 5.86284 6.19610 6.25097 6.86326 7.37999 8.92220 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.039874 B = 0.002645 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.041153 B =10582.710294 C =11248.393476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.261 1.261 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.022 3.978 10 C -0.095 4.095 11 C -0.108 4.108 12 C 0.071 3.929 13 O -0.399 6.399 14 C 0.100 3.900 15 C -0.096 4.096 16 C -0.104 4.104 17 C -0.117 4.117 18 C -0.106 4.106 19 C -0.113 4.113 20 C -0.046 4.046 21 Cl -0.071 7.071 22 H 0.264 0.736 23 H -0.009 1.009 24 H -0.009 1.009 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.150 0.850 35 H 0.163 0.837 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.115 -27.155 -0.022 27.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.791 3.209 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.204 1.204 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.015 4.015 10 C -0.133 4.133 11 C -0.146 4.146 12 C -0.005 4.005 13 O -0.319 6.319 14 C 0.024 3.976 15 C -0.097 4.097 16 C -0.122 4.122 17 C -0.135 4.135 18 C -0.124 4.124 19 C -0.132 4.132 20 C -0.072 4.072 21 Cl -0.042 7.042 22 H 0.072 0.928 23 H 0.009 0.991 24 H 0.009 0.991 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.149 0.851 34 H 0.168 0.832 35 H 0.180 0.820 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.944 -27.070 -0.022 27.356 hybrid contribution 0.505 1.206 0.002 1.308 sum 4.448 -25.864 -0.020 26.243 Atomic orbital electron populations 1.70109 1.07879 1.27730 1.51829 1.26027 0.95801 1.03526 0.94768 0.85371 0.79094 0.78623 0.77786 1.18460 1.20362 1.20351 1.21764 0.93643 0.92391 1.50316 0.91999 1.19026 0.94522 0.93195 0.94798 1.21359 0.98054 0.92804 1.01049 1.21449 0.98267 0.92771 1.02120 1.22531 0.94445 0.82363 1.01154 1.87800 1.34495 1.13947 1.95668 1.21251 0.91655 0.82977 1.01710 1.19656 0.95089 0.92663 1.02249 1.21160 0.92324 1.00271 0.98430 1.21625 1.01530 0.92056 0.98290 1.21529 0.93932 0.98781 0.98187 1.21324 0.94094 0.97626 1.00111 1.20811 0.84836 0.94435 1.07131 1.98366 1.10634 1.98294 1.96903 0.92766 0.99108 0.99099 0.92513 0.92517 0.92370 0.92377 0.92184 0.92194 0.91088 0.91070 0.85137 0.83228 0.81963 0.82813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.90 13.29 21.44 0.28 -57.61 16 2 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 3 Si 0.97 44.69 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 7 C -0.54 -31.42 9.11 25.60 0.23 -31.18 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.10 -3.91 5.15 30.60 0.16 -3.75 16 11 C -0.11 -3.79 5.58 30.60 0.17 -3.62 16 12 C 0.07 2.00 5.94 71.98 0.43 2.43 16 13 O -0.40 -11.26 8.82 -148.98 -1.31 -12.57 16 14 C 0.10 2.33 5.30 71.24 0.38 2.71 16 15 C -0.10 -2.14 5.88 -19.84 -0.12 -2.25 16 16 C -0.10 -2.25 9.38 22.27 0.21 -2.04 16 17 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 18 C -0.11 -1.38 10.05 22.26 0.22 -1.16 16 19 C -0.11 -1.69 9.83 22.29 0.22 -1.47 16 20 C -0.05 -0.88 6.31 22.32 0.14 -0.74 16 21 Cl -0.07 -1.29 27.99 -2.72 -0.08 -1.36 16 22 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 23 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 24 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 25 H 0.06 2.23 8.14 -2.38 -0.02 2.21 16 26 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.13 3.13 7.01 -2.91 -0.02 3.11 16 34 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 36 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -66.38 322.61 4.84 -61.54 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: 1.04 Total: 4.46 kcal Atomic # 6 Polarization: -44.04 SS G_CDS: 2.88 Total: -41.17 kcal Atomic # 7 Polarization: -57.90 SS G_CDS: 0.28 Total: -57.61 kcal Atomic # 8 Polarization: -11.26 SS G_CDS: -1.31 Total: -12.57 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.36 kcal Total: -66.38 4.84 -61.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385404986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.521 kcal (2) G-P(sol) polarization free energy of solvation -66.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds