Wall clock time and date at job start Mon Mar 30 2020 08:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00144 * 2 1 4 4 H 1.48497 * 109.47459 * 240.00349 * 3 2 1 5 5 H 1.48503 * 109.46813 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47306 * 119.99721 * 3 2 1 7 7 C 1.37877 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00215 * 186.45558 * 7 2 1 9 9 C 1.50700 * 120.00152 * 6.45546 * 7 2 1 10 10 H 1.08999 * 109.46755 * 328.97369 * 9 7 2 11 11 C 1.50699 * 109.47381 * 208.97125 * 9 7 2 12 12 O 1.21251 * 120.00110 * 270.00035 * 11 9 7 13 13 C 1.47155 * 119.99887 * 89.99956 * 11 9 7 14 14 C 1.40232 * 120.96722 * 359.71638 * 13 11 9 15 15 N 1.32102 * 118.88680 * 180.27725 * 14 13 11 16 16 C 1.31899 * 120.99703 * 359.97438 * 15 14 13 17 17 N 1.31896 * 122.16110 * 0.02562 * 16 15 14 18 18 C 1.32097 * 121.00190 * 359.97438 * 17 16 15 19 19 C 1.50701 * 109.47153 * 88.97019 * 9 7 2 20 20 C 1.38230 * 120.00093 * 53.01909 * 19 9 7 21 21 C 1.38237 * 120.00080 * 179.78794 * 20 19 9 22 22 C 1.38239 * 119.99770 * 0.44371 * 21 20 19 23 23 C 1.38233 * 119.99848 * 359.81192 * 22 21 20 24 24 C 1.38230 * 120.00198 * 359.97438 * 23 22 21 25 25 H 0.97002 * 119.99907 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.55627 * 0.25599 * 14 13 11 27 27 H 1.07992 * 118.91664 * 180.02562 * 16 15 14 28 28 H 1.08001 * 120.56058 * 180.02562 * 18 17 16 29 29 H 1.08007 * 119.99729 * 0.02562 * 20 19 9 30 30 H 1.07998 * 120.00083 * 180.27551 * 21 20 19 31 31 H 1.07996 * 119.99541 * 179.83205 * 22 21 20 32 32 H 1.07999 * 119.99602 * 180.02562 * 23 22 21 33 33 H 1.08006 * 119.99990 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1971 0.1046 9 6 1.2583 -2.4950 -0.1478 10 1 0.2665 -2.3969 0.2937 11 6 2.0156 -3.5911 0.5564 12 8 2.8487 -4.2351 -0.0445 13 6 1.7438 -3.8798 1.9736 14 6 0.7889 -3.1438 2.6897 15 7 0.5818 -3.4341 3.9617 16 6 1.2566 -4.3986 4.5568 17 7 2.1634 -5.1159 3.9222 18 6 2.4361 -4.8954 2.6486 19 6 1.1258 -2.8353 -1.6099 20 6 2.2480 -2.8682 -2.4164 21 6 2.1270 -3.1847 -3.7566 22 6 0.8826 -3.4593 -4.2923 23 6 -0.2403 -3.4213 -3.4869 24 6 -0.1187 -3.1091 -2.1458 25 1 -0.4850 0.8401 0.0004 26 1 0.2323 -2.3526 2.2095 27 1 1.0600 -4.6078 5.5979 28 1 3.1798 -5.4874 2.1358 29 1 3.2198 -2.6503 -1.9985 30 1 3.0043 -3.2147 -4.3857 31 1 0.7878 -3.7039 -5.3399 32 1 -1.2124 -3.6363 -3.9054 33 1 -0.9961 -3.0790 -1.5167 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000394066732.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:19:30 Heat of formation + Delta-G solvation = 19.151971 kcal Electronic energy + Delta-G solvation = -19477.914118 eV Core-core repulsion = 16468.090844 eV Total energy + Delta-G solvation = -3009.823274 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.095 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.12331 -40.54393 -39.15573 -35.65471 -34.79098 -33.42966 -32.76998 -31.53426 -29.32626 -26.77851 -25.69735 -25.10509 -23.21131 -22.54119 -20.81301 -18.80398 -18.70987 -18.39223 -17.52126 -17.19772 -16.51575 -16.06368 -15.87792 -15.59021 -15.19823 -14.84714 -14.67669 -14.54331 -14.04481 -13.97720 -13.38790 -13.29620 -13.00473 -12.84810 -12.63939 -12.18085 -11.97041 -11.91378 -11.63664 -11.34555 -10.77321 -10.69115 -10.46730 -10.29718 -9.56464 -9.27797 -8.25708 -6.34717 -0.66855 -0.03676 0.73777 0.77828 1.38935 1.40658 1.46238 1.54593 2.37870 2.76980 2.97481 3.06768 3.11120 3.18593 3.35399 3.54483 3.85471 4.23900 4.30161 4.37496 4.44162 4.54457 4.63904 4.82255 4.86885 4.96725 5.09527 5.29158 5.36848 5.44104 5.61226 5.78074 5.78780 5.82342 5.92727 6.21632 6.39692 6.59411 6.74114 6.93564 7.31098 8.82016 Molecular weight = 268.10amu Principal moments of inertia in cm(-1) A = 0.013819 B = 0.008183 C = 0.006000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.771200 B = 3420.943253 C = 4665.752196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.271 1.271 7 C -0.520 4.520 8 H 0.048 0.952 9 C 0.035 3.965 10 H 0.076 0.924 11 C 0.419 3.581 12 O -0.485 6.485 13 C -0.272 4.272 14 C 0.208 3.792 15 N -0.539 5.539 16 C 0.310 3.690 17 N -0.536 5.536 18 C 0.198 3.802 19 C -0.057 4.057 20 C -0.107 4.107 21 C -0.138 4.138 22 C -0.140 4.140 23 C -0.131 4.131 24 C -0.138 4.138 25 H 0.270 0.730 26 H 0.176 0.824 27 H 0.240 0.760 28 H 0.186 0.814 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.146 0.854 32 H 0.140 0.860 33 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.262 -6.351 1.053 6.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.160 4.160 3 Si 0.770 3.230 4 H -0.202 1.202 5 H -0.204 1.204 6 H -0.196 1.196 7 C -0.557 4.557 8 H 0.066 0.934 9 C 0.016 3.984 10 H 0.094 0.906 11 C 0.298 3.702 12 O -0.363 6.363 13 C -0.277 4.277 14 C 0.042 3.958 15 N -0.253 5.253 16 C 0.025 3.975 17 N -0.249 5.249 18 C 0.032 3.968 19 C -0.058 4.058 20 C -0.125 4.125 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.149 4.149 24 C -0.156 4.156 25 H 0.079 0.921 26 H 0.193 0.807 27 H 0.256 0.744 28 H 0.203 0.797 29 H 0.117 0.883 30 H 0.152 0.848 31 H 0.163 0.837 32 H 0.158 0.842 33 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.191 -6.756 1.739 6.979 hybrid contribution 0.564 1.431 -0.794 1.731 sum 0.374 -5.325 0.945 5.421 Atomic orbital electron populations 1.69924 1.06618 1.28214 1.48317 1.25437 0.95590 1.01517 0.93491 0.85814 0.78781 0.79654 0.78761 1.20221 1.20364 1.19623 1.20606 0.92819 0.89393 1.52892 0.93392 1.18304 0.98461 0.92054 0.89604 0.90604 1.22892 0.80309 0.80880 0.86070 1.90384 1.30355 1.47156 1.68373 1.22420 1.03658 1.02605 0.99053 1.23878 0.89781 0.93104 0.89036 1.68598 1.27656 1.18426 1.10628 1.26061 0.84869 0.84687 1.01889 1.68574 1.18144 1.29017 1.09202 1.23773 0.92967 0.90538 0.89562 1.20296 0.93358 0.94907 0.97229 1.20957 0.98122 0.99342 0.94113 1.21357 0.98653 1.00808 0.94779 1.21299 0.92180 1.01766 1.00548 1.21318 0.99595 1.00665 0.93302 1.21189 0.96729 1.01241 0.96468 0.92098 0.80674 0.74431 0.79699 0.88269 0.84799 0.83661 0.84211 0.86936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.97 12.85 21.45 0.28 -45.69 16 2 C 0.04 2.15 5.45 84.65 0.46 2.61 16 3 Si 0.94 40.96 29.54 68.60 2.03 42.99 16 4 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 6 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 7 C -0.52 -26.15 7.62 25.60 0.20 -25.96 16 8 H 0.05 2.49 7.82 -2.91 -0.02 2.47 16 9 C 0.03 1.61 1.84 -13.03 -0.02 1.59 16 10 H 0.08 3.61 5.56 -2.39 -0.01 3.60 16 11 C 0.42 17.85 6.16 28.03 0.17 18.02 16 12 O -0.49 -21.68 15.24 -2.94 -0.04 -21.72 16 13 C -0.27 -10.02 5.90 -19.97 -0.12 -10.14 16 14 C 0.21 7.48 10.64 85.14 0.91 8.39 16 15 N -0.54 -17.21 10.42 -198.75 -2.07 -19.28 16 16 C 0.31 8.19 12.27 180.82 2.22 10.41 16 17 N -0.54 -15.58 10.42 -198.75 -2.07 -17.65 16 18 C 0.20 6.32 10.88 85.14 0.93 7.25 16 19 C -0.06 -2.58 4.61 -19.87 -0.09 -2.68 16 20 C -0.11 -4.65 8.05 22.27 0.18 -4.47 16 21 C -0.14 -4.97 10.05 22.27 0.22 -4.75 16 22 C -0.14 -4.52 10.05 22.27 0.22 -4.29 16 23 C -0.13 -4.48 10.05 22.27 0.22 -4.26 16 24 C -0.14 -5.64 9.67 22.27 0.22 -5.43 16 25 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 26 H 0.18 6.83 6.51 -2.91 -0.02 6.81 16 27 H 0.24 3.90 8.06 -2.91 -0.02 3.88 16 28 H 0.19 5.34 7.74 -2.91 -0.02 5.32 16 29 H 0.10 4.54 7.57 -2.91 -0.02 4.52 16 30 H 0.13 4.00 8.06 -2.91 -0.02 3.97 16 31 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 32 H 0.14 3.80 8.06 -2.91 -0.02 3.78 16 33 H 0.11 4.47 7.96 -2.91 -0.02 4.44 16 Total: -1.00 -58.46 296.74 4.96 -53.50 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 1.13 Total: 21.55 kcal Atomic # 6 Polarization: -19.41 SS G_CDS: 5.71 Total: -13.69 kcal Atomic # 7 Polarization: -78.76 SS G_CDS: -3.87 Total: -82.62 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.04 Total: -21.72 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -58.46 4.96 -53.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000394066732.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.649 kcal (2) G-P(sol) polarization free energy of solvation -58.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds