Wall clock time and date at job start Mon Mar 30 2020 06:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20763 * 119.99928 * 2 1 4 4 C 1.50695 * 119.99913 * 180.02562 * 2 1 3 5 5 H 1.09002 * 109.47811 * 34.99767 * 4 2 1 6 6 Cl 1.80301 * 109.47223 * 155.00031 * 4 2 1 7 7 C 1.50701 * 109.46903 * 274.99718 * 4 2 1 8 8 C 1.37634 * 120.13047 * 101.55097 * 7 4 2 9 9 C 1.38612 * 120.25216 * 179.70058 * 8 7 4 10 10 C 1.50695 * 119.75110 * 179.97438 * 9 8 7 11 11 O 1.42898 * 109.47254 * 90.00304 * 10 9 8 12 12 C 1.38656 * 120.50206 * 0.02562 * 9 8 7 13 13 C 1.37600 * 120.24725 * 0.02562 * 12 9 8 14 14 C 1.40700 * 120.12433 * 281.27124 * 7 4 2 15 15 C 1.41390 * 120.24696 * 0.25480 * 14 7 4 16 16 H 1.08000 * 120.00242 * 31.61826 * 15 14 7 17 17 C 1.39952 * 120.00099 * 211.61614 * 15 14 7 18 18 N 1.30827 * 119.99993 * 10.17628 * 17 15 14 19 19 Si 1.86796 * 120.00211 * 190.17265 * 17 15 14 20 20 H 1.48496 * 109.47175 * 59.99750 * 19 17 15 21 21 H 1.48497 * 109.47473 * 180.02562 * 19 17 15 22 22 H 1.48508 * 109.47088 * 300.00342 * 19 17 15 23 23 H 1.09003 * 109.47027 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47141 * 299.99183 * 1 2 3 25 25 H 1.09005 * 109.47338 * 59.99877 * 1 2 3 26 26 H 1.08002 * 119.87346 * 359.72087 * 8 7 4 27 27 H 1.09002 * 109.47261 * 210.00386 * 10 9 8 28 28 H 1.09002 * 109.47409 * 330.00489 * 10 9 8 29 29 H 0.96697 * 114.00502 * 180.02562 * 11 10 9 30 30 H 1.07991 * 119.88044 * 179.97438 * 12 9 8 31 31 H 1.07994 * 120.12989 * 179.97438 * 13 12 9 32 32 H 0.96993 * 120.00403 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7131 -2.0405 -0.5903 6 17 3.8952 -1.0550 -0.7189 7 6 2.4044 -1.8026 1.4146 8 6 1.5825 -2.8026 1.8824 9 6 1.7169 -3.2664 3.1817 10 6 0.8106 -4.3614 3.6822 11 8 1.4087 -5.6323 3.4190 12 6 2.6781 -2.7298 4.0247 13 6 3.5099 -1.7285 3.5788 14 6 3.3834 -1.2505 2.2611 15 6 4.2337 -0.2231 1.7914 16 1 3.8741 0.4816 1.0562 17 6 5.5413 -0.1193 2.2793 18 7 6.0439 -1.0788 3.0129 19 14 6.5690 1.3894 1.8830 20 1 5.8922 2.6017 2.4097 21 1 7.9073 1.2561 2.5125 22 1 6.7246 1.5096 0.4110 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 0.8303 -3.2279 1.2344 27 1 0.6600 -4.2461 4.7556 28 1 -0.1505 -4.2995 3.1717 29 1 0.8790 -6.3852 3.7150 30 1 2.7737 -3.0984 5.0352 31 1 4.2577 -1.3116 4.2371 32 1 6.9503 -1.0071 3.3507 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396035822.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:43 Heat of formation + Delta-G solvation = -98.385126 kcal Electronic energy + Delta-G solvation = -18395.882821 eV Core-core repulsion = 15346.237156 eV Total energy + Delta-G solvation = -3049.645665 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.66059 -39.42866 -37.45849 -36.43113 -35.44280 -33.51540 -31.91000 -30.82183 -28.53003 -27.64020 -25.09098 -22.67646 -21.86294 -20.21743 -19.10061 -18.14283 -17.45617 -16.69755 -16.58792 -16.44968 -15.89172 -15.76194 -15.17864 -14.57377 -14.46603 -13.85114 -13.62666 -13.48980 -13.39782 -13.05962 -12.90969 -12.89966 -12.64258 -12.55407 -12.01381 -11.71433 -11.57446 -11.39767 -11.10678 -10.75942 -10.60465 -10.43043 -9.25809 -9.00294 -8.57521 -6.19811 0.69023 0.95227 1.22414 1.31254 1.41029 1.45007 1.68485 2.20755 2.73763 3.21393 3.66182 3.96403 4.08870 4.17293 4.25981 4.40218 4.50751 4.65786 4.69320 4.74025 4.75795 4.87707 5.16718 5.25802 5.36703 5.48440 5.73282 5.89757 6.18568 6.21851 6.39083 6.60684 6.80636 7.00027 7.04186 7.14741 8.39101 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015992 B = 0.009311 C = 0.006786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1750.451208 B = 3006.559541 C = 4125.007389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.352 3.648 3 O -0.477 6.477 4 C 0.017 3.983 5 H 0.143 0.857 6 Cl -0.174 7.174 7 C -0.228 4.228 8 C -0.047 4.047 9 C -0.223 4.223 10 C 0.142 3.858 11 O -0.596 6.596 12 C -0.087 4.087 13 C -0.186 4.186 14 C 0.103 3.897 15 C -0.452 4.452 16 H 0.098 0.902 17 C 0.039 3.961 18 N -0.827 5.827 19 Si 0.952 3.048 20 H -0.263 1.263 21 H -0.267 1.267 22 H -0.269 1.269 23 H 0.108 0.892 24 H 0.096 0.904 25 H 0.114 0.886 26 H 0.134 0.866 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.389 0.611 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.882 -3.230 -2.669 12.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.228 3.772 3 O -0.352 6.352 4 C -0.027 4.027 5 H 0.161 0.839 6 Cl -0.147 7.147 7 C -0.230 4.230 8 C -0.066 4.066 9 C -0.224 4.224 10 C 0.065 3.935 11 O -0.404 6.404 12 C -0.106 4.106 13 C -0.205 4.205 14 C 0.100 3.900 15 C -0.481 4.481 16 H 0.116 0.884 17 C -0.175 4.175 18 N -0.455 5.455 19 Si 0.775 3.225 20 H -0.188 1.188 21 H -0.191 1.191 22 H -0.194 1.194 23 H 0.126 0.874 24 H 0.114 0.886 25 H 0.133 0.867 26 H 0.151 0.849 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.238 0.762 30 H 0.118 0.882 31 H 0.112 0.888 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.744 -2.338 -2.860 11.362 hybrid contribution 0.878 0.233 0.370 0.981 sum -9.866 -2.105 -2.490 10.391 Atomic orbital electron populations 1.22185 0.89367 1.06799 1.05715 1.25330 0.94017 0.88733 0.69141 1.90380 1.72781 1.35638 1.36375 1.23354 0.84601 0.99294 0.95422 0.83942 1.98700 1.33924 1.97626 1.84459 1.19301 1.06205 1.04510 0.92954 1.20553 0.97386 0.93966 0.94651 1.19328 1.03904 1.03259 0.95958 1.20758 0.93534 0.80876 0.98330 1.86630 1.51686 1.16569 1.85516 1.20840 0.95092 0.96082 0.98573 1.21251 1.01228 1.01657 0.96413 1.17726 0.90655 0.90815 0.90798 1.20256 0.96229 1.11469 1.20147 0.88388 1.26444 0.99633 0.98328 0.93085 1.69859 1.16261 1.31491 1.27856 0.85693 0.77787 0.79674 0.79389 1.18760 1.19124 1.19374 0.87367 0.88559 0.86724 0.84854 0.93168 0.91417 0.76172 0.88150 0.88794 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 10.33 71.24 0.74 -3.29 16 2 C 0.35 12.26 6.22 29.10 0.18 12.44 16 3 O -0.48 -20.75 14.99 -1.46 -0.02 -20.77 16 4 C 0.02 0.64 3.01 29.10 0.09 0.73 16 5 H 0.14 4.06 7.98 -2.39 -0.02 4.04 16 6 Cl -0.17 -7.71 24.24 -2.72 -0.07 -7.78 16 7 C -0.23 -9.90 4.91 -19.41 -0.10 -10.00 16 8 C -0.05 -1.80 9.29 22.22 0.21 -1.59 16 9 C -0.22 -8.81 5.53 -19.68 -0.11 -8.92 16 10 C 0.14 4.17 7.16 71.23 0.51 4.68 16 11 O -0.60 -18.05 13.64 -148.98 -2.03 -20.08 16 12 C -0.09 -3.96 9.67 22.22 0.21 -3.74 16 13 C -0.19 -9.71 8.64 22.73 0.20 -9.51 16 14 C 0.10 5.36 5.41 -21.29 -0.12 5.25 16 15 C -0.45 -24.40 6.21 23.46 0.15 -24.26 16 16 H 0.10 5.36 4.10 -2.91 -0.01 5.35 16 17 C 0.04 2.07 5.25 85.26 0.45 2.51 16 18 N -0.83 -45.20 11.01 21.83 0.24 -44.96 16 19 Si 0.95 42.53 29.57 68.60 2.03 44.55 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 23 H 0.11 1.75 8.00 -2.39 -0.02 1.73 16 24 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 25 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.13 3.90 8.02 -2.91 -0.02 3.87 16 27 H 0.05 1.33 8.08 -2.39 -0.02 1.31 16 28 H 0.07 1.57 8.08 -2.39 -0.02 1.55 16 29 H 0.39 6.93 9.12 -74.06 -0.68 6.25 16 30 H 0.10 4.17 8.06 -2.92 -0.02 4.14 16 31 H 0.09 5.26 6.43 -2.91 -0.02 5.24 16 32 H 0.28 14.27 8.30 -92.71 -0.77 13.50 16 Total: -1.00 -69.54 288.85 3.04 -66.50 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: 0.48 Total: 18.24 kcal Atomic # 6 Polarization: -38.10 SS G_CDS: 2.41 Total: -35.70 kcal Atomic # 7 Polarization: -45.20 SS G_CDS: 0.24 Total: -44.96 kcal Atomic # 8 Polarization: -38.80 SS G_CDS: -2.05 Total: -40.85 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.55 kcal Atomic # 17 Polarization: -7.71 SS G_CDS: -0.07 Total: -7.78 kcal Total: -69.54 3.04 -66.50 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396035822.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.887 kcal (2) G-P(sol) polarization free energy of solvation -69.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds