Wall clock time and date at job start Mon Mar 30 2020 06:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20767 * 120.00050 * 2 1 4 4 C 1.50701 * 120.00033 * 179.97438 * 2 1 3 5 5 H 1.08995 * 109.47120 * 325.00523 * 4 2 1 6 6 Cl 1.80295 * 109.47186 * 204.99740 * 4 2 1 7 7 C 1.50708 * 109.47068 * 85.00258 * 4 2 1 8 8 C 1.37638 * 120.12834 * 94.72144 * 7 4 2 9 9 C 1.38611 * 120.24803 * 179.74588 * 8 7 4 10 10 C 1.50698 * 119.75230 * 180.26183 * 9 8 7 11 11 O 1.42902 * 109.47000 * 270.24926 * 10 9 8 12 12 C 1.38658 * 120.49893 * 0.51416 * 9 8 7 13 13 C 1.37595 * 120.25121 * 359.76774 * 12 9 8 14 14 C 1.40695 * 120.12525 * 275.00092 * 7 4 2 15 15 C 1.41391 * 120.24525 * 0.02562 * 14 7 4 16 16 H 1.08003 * 120.00334 * 334.92441 * 15 14 7 17 17 C 1.39946 * 120.00015 * 154.92407 * 15 14 7 18 18 N 1.30819 * 120.00532 * 342.26594 * 17 15 14 19 19 Si 1.86806 * 119.99895 * 162.26461 * 17 15 14 20 20 H 1.48494 * 109.47298 * 89.99946 * 19 17 15 21 21 H 1.48504 * 109.47108 * 210.00076 * 19 17 15 22 22 H 1.48503 * 109.47099 * 329.99979 * 19 17 15 23 23 H 1.08998 * 109.47458 * 270.00061 * 1 2 3 24 24 H 1.09005 * 109.47274 * 30.00030 * 1 2 3 25 25 H 1.09001 * 109.46885 * 149.99594 * 1 2 3 26 26 H 1.07995 * 119.87794 * 0.02562 * 8 7 4 27 27 H 1.09001 * 109.47032 * 30.24943 * 10 9 8 28 28 H 1.09000 * 109.47461 * 150.25131 * 10 9 8 29 29 H 0.96702 * 113.99878 * 179.97438 * 11 10 9 30 30 H 1.07999 * 119.87547 * 179.75202 * 12 9 8 31 31 H 1.08002 * 120.13167 * 179.97438 * 13 12 9 32 32 H 0.96997 * 120.00833 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7131 -2.0404 0.5903 6 17 3.8952 -1.0550 0.7188 7 6 2.4045 -1.8027 -1.4147 8 6 3.5427 -1.5184 -2.1345 9 6 3.6799 -1.9793 -3.4345 10 6 4.9334 -1.6665 -4.2104 11 8 4.7640 -0.4332 -4.9121 12 6 2.6704 -2.7215 -4.0284 13 6 1.5214 -3.0127 -3.3296 14 6 1.3734 -2.5545 -2.0072 15 6 0.1969 -2.8472 -1.2796 16 1 0.2213 -2.8710 -0.2001 17 6 -0.9993 -3.1060 -1.9583 18 7 -1.1322 -2.7483 -3.2096 19 14 -2.4065 -3.9624 -1.0773 20 1 -3.2798 -2.9472 -0.4356 21 1 -3.1986 -4.7485 -2.0571 22 1 -1.8597 -4.8725 -0.0389 23 1 -0.3634 0.0000 1.0276 24 1 -0.3634 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5139 26 1 4.3337 -0.9380 -1.6832 27 1 5.7746 -1.5806 -3.5225 28 1 5.1281 -2.4668 -4.9243 29 1 5.5339 -0.1686 -5.4339 30 1 2.7863 -3.0721 -5.0432 31 1 0.7362 -3.5906 -3.7942 32 1 -1.9614 -2.9274 -3.6798 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396035826.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:47 Heat of formation + Delta-G solvation = -104.015651 kcal Electronic energy + Delta-G solvation = -18350.139075 eV Core-core repulsion = 15300.249252 eV Total energy + Delta-G solvation = -3049.889823 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -40.72938 -39.52935 -37.57665 -36.81011 -35.56666 -33.71430 -31.75734 -30.88291 -28.72532 -27.69795 -25.18951 -22.79295 -21.85924 -20.36866 -19.09247 -18.24476 -17.44069 -16.95398 -16.69853 -16.43222 -15.90108 -15.80372 -15.22491 -14.70035 -14.44349 -14.06718 -13.78614 -13.55480 -13.40389 -13.19829 -12.97206 -12.64311 -12.60296 -12.51946 -11.99405 -11.84782 -11.64478 -11.51244 -11.10975 -10.99436 -10.84298 -10.67439 -9.30243 -9.28566 -8.65400 -6.35534 0.63552 0.91282 1.15460 1.31395 1.47945 1.53823 1.61431 2.22230 2.67322 3.14571 3.61087 3.92418 3.96655 4.17622 4.25629 4.33890 4.43772 4.61443 4.65031 4.67431 4.77856 4.80666 5.15781 5.30549 5.32860 5.41063 5.63816 5.87269 6.00718 6.17726 6.27980 6.47847 6.62362 6.86080 6.94280 7.05325 8.29993 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014884 B = 0.009058 C = 0.006481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.727240 B = 3090.483808 C = 4319.057036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.368 3.632 3 O -0.488 6.488 4 C 0.030 3.970 5 H 0.138 0.862 6 Cl -0.178 7.178 7 C -0.233 4.233 8 C -0.054 4.054 9 C -0.232 4.232 10 C 0.140 3.860 11 O -0.595 6.595 12 C -0.082 4.082 13 C -0.187 4.187 14 C 0.113 3.887 15 C -0.474 4.474 16 H 0.101 0.899 17 C 0.047 3.953 18 N -0.810 5.810 19 Si 0.968 3.032 20 H -0.255 1.255 21 H -0.277 1.277 22 H -0.254 1.254 23 H 0.125 0.875 24 H 0.079 0.921 25 H 0.114 0.886 26 H 0.103 0.897 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.389 0.611 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.328 -1.561 2.862 3.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.266 4.266 2 C 0.246 3.754 3 O -0.364 6.364 4 C -0.014 4.014 5 H 0.156 0.844 6 Cl -0.151 7.151 7 C -0.235 4.235 8 C -0.072 4.072 9 C -0.233 4.233 10 C 0.063 3.937 11 O -0.403 6.403 12 C -0.101 4.101 13 C -0.207 4.207 14 C 0.110 3.890 15 C -0.502 4.502 16 H 0.118 0.882 17 C -0.171 4.171 18 N -0.434 5.434 19 Si 0.789 3.211 20 H -0.179 1.179 21 H -0.202 1.202 22 H -0.177 1.177 23 H 0.143 0.857 24 H 0.098 0.902 25 H 0.132 0.868 26 H 0.121 0.879 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.238 0.762 30 H 0.124 0.876 31 H 0.128 0.872 32 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.030 -1.000 3.004 3.329 hybrid contribution 0.079 -0.366 -0.334 0.502 sum 1.109 -1.366 2.670 3.198 Atomic orbital electron populations 1.22590 0.90852 1.06944 1.06244 1.25085 0.93576 0.88593 0.68180 1.90351 1.72798 1.35507 1.37773 1.23307 0.83251 0.98877 0.95994 0.84415 1.98661 1.33500 1.97796 1.85162 1.19202 0.99597 1.10046 0.94678 1.20620 0.96451 0.96293 0.93876 1.19326 0.99125 1.09531 0.95367 1.20765 0.94088 0.85381 0.93454 1.86629 1.44976 1.41507 1.67180 1.20851 0.93500 0.97696 0.98053 1.21304 0.97334 1.05292 0.96743 1.17607 0.91731 0.87404 0.92229 1.19828 0.92628 1.42237 0.95506 0.88173 1.26661 1.02321 0.92980 0.95145 1.69871 1.28069 1.33469 1.12004 0.85386 0.77263 0.79362 0.79113 1.17940 1.20200 1.17731 0.85694 0.90222 0.86753 0.87915 0.93078 0.92317 0.76231 0.87647 0.87158 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -6.92 10.25 71.23 0.73 -6.19 16 2 C 0.37 14.50 6.41 29.10 0.19 14.68 16 3 O -0.49 -21.78 17.01 -1.47 -0.03 -21.81 16 4 C 0.03 1.16 2.84 29.10 0.08 1.24 16 5 H 0.14 4.84 6.48 -2.39 -0.02 4.82 16 6 Cl -0.18 -6.73 26.09 -2.72 -0.07 -6.80 16 7 C -0.23 -10.53 5.06 -19.40 -0.10 -10.63 16 8 C -0.05 -2.46 8.79 22.22 0.20 -2.27 16 9 C -0.23 -10.22 5.53 -19.68 -0.11 -10.33 16 10 C 0.14 4.91 7.16 71.24 0.51 5.42 16 11 O -0.59 -21.01 13.64 -148.98 -2.03 -23.05 16 12 C -0.08 -3.75 9.67 22.22 0.21 -3.53 16 13 C -0.19 -9.12 8.69 22.73 0.20 -8.92 16 14 C 0.11 5.36 5.57 -21.29 -0.12 5.24 16 15 C -0.47 -20.63 5.68 23.46 0.13 -20.50 16 16 H 0.10 3.92 6.16 -2.91 -0.02 3.90 16 17 C 0.05 1.98 5.09 85.26 0.43 2.42 16 18 N -0.81 -37.06 10.99 21.83 0.24 -36.82 16 19 Si 0.97 31.93 29.59 68.60 2.03 33.96 16 20 H -0.26 -7.96 7.11 99.48 0.71 -7.25 16 21 H -0.28 -9.21 7.11 99.48 0.71 -8.51 16 22 H -0.25 -8.17 7.11 99.48 0.71 -7.47 16 23 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 24 H 0.08 2.60 8.14 -2.38 -0.02 2.58 16 25 H 0.11 4.15 4.65 -2.39 -0.01 4.13 16 26 H 0.10 4.57 6.63 -2.91 -0.02 4.56 16 27 H 0.05 1.62 8.08 -2.39 -0.02 1.60 16 28 H 0.06 1.78 8.08 -2.39 -0.02 1.76 16 29 H 0.39 8.74 9.12 -74.06 -0.68 8.06 16 30 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 31 H 0.11 5.53 6.20 -2.91 -0.02 5.51 16 32 H 0.29 12.16 8.30 -92.71 -0.77 11.39 16 Total: -1.00 -58.38 287.43 2.99 -55.39 By element: Atomic # 1 Polarization: 32.00 SS G_CDS: 0.49 Total: 32.49 kcal Atomic # 6 Polarization: -35.72 SS G_CDS: 2.36 Total: -33.37 kcal Atomic # 7 Polarization: -37.06 SS G_CDS: 0.24 Total: -36.82 kcal Atomic # 8 Polarization: -42.80 SS G_CDS: -2.06 Total: -44.85 kcal Atomic # 14 Polarization: 31.93 SS G_CDS: 2.03 Total: 33.96 kcal Atomic # 17 Polarization: -6.73 SS G_CDS: -0.07 Total: -6.80 kcal Total: -58.38 2.99 -55.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396035826.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.626 kcal (2) G-P(sol) polarization free energy of solvation -58.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds