Wall clock time and date at job start Mon Mar 30 2020 06:41:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.20759 * 119.99738 * 2 1 4 4 C 1.50697 * 119.99899 * 179.97438 * 2 1 3 5 5 H 1.09003 * 109.46932 * 35.00353 * 4 2 1 6 6 Cl 1.80306 * 109.46750 * 155.00062 * 4 2 1 7 7 C 1.50696 * 109.47241 * 274.99972 * 4 2 1 8 8 C 1.38655 * 119.75181 * 267.66574 * 7 4 2 9 9 C 1.37601 * 120.25228 * 180.02562 * 8 7 4 10 10 C 1.40729 * 119.74016 * 359.97438 * 9 8 7 11 11 C 1.41397 * 120.23884 * 180.02562 * 10 9 8 12 12 H 1.08003 * 119.99995 * 205.26194 * 11 10 9 13 13 C 1.39949 * 120.00306 * 25.25650 * 11 10 9 14 14 N 1.30822 * 119.99519 * 16.86325 * 13 11 10 15 15 Si 1.86791 * 119.99990 * 196.85873 * 13 11 10 16 16 H 1.48504 * 109.47471 * 60.00357 * 15 13 11 17 17 H 1.48504 * 109.47292 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.47396 * 300.00291 * 15 13 11 19 19 C 1.40698 * 119.51454 * 359.75349 * 10 9 8 20 20 C 1.37634 * 119.74101 * 0.51758 * 19 10 9 21 21 C 1.50706 * 119.87209 * 179.75352 * 20 19 10 22 22 O 1.42903 * 109.47099 * 354.44116 * 21 20 19 23 23 H 1.09000 * 109.46969 * 270.00511 * 1 2 3 24 24 H 1.08999 * 109.46985 * 29.99877 * 1 2 3 25 25 H 1.08999 * 109.47131 * 150.00746 * 1 2 3 26 26 H 1.08010 * 119.87514 * 359.97438 * 8 7 4 27 27 H 1.07996 * 120.12257 * 180.02562 * 9 8 7 28 28 H 0.97004 * 119.99347 * 179.97438 * 14 13 11 29 29 H 1.07998 * 120.12442 * 180.24952 * 19 10 9 30 30 H 1.09000 * 109.46802 * 234.44579 * 21 20 19 31 31 H 1.08999 * 109.47318 * 114.44199 * 21 20 19 32 32 H 0.96701 * 114.00122 * 300.00174 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7131 -2.0409 -0.5886 6 17 3.8953 -1.0555 -0.7180 7 6 2.4045 -1.8014 1.4162 8 6 3.5322 -1.4682 2.1508 9 6 3.6745 -1.9163 3.4440 10 6 2.6695 -2.7151 4.0206 11 6 2.8046 -3.1808 5.3489 12 1 2.2940 -4.0800 5.6604 13 6 3.6001 -2.4766 6.2598 14 7 3.9474 -1.2410 6.0062 15 14 4.1659 -3.3008 7.8377 16 1 4.9761 -4.5005 7.5067 17 1 4.9895 -2.3488 8.6257 18 1 2.9815 -3.7081 8.6357 19 6 1.5268 -3.0421 3.2677 20 6 1.4084 -2.5875 1.9741 21 6 0.1883 -2.9407 1.1631 22 8 -0.6280 -3.8512 1.9025 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5137 26 1 4.3024 -0.8554 1.7060 27 1 4.5535 -1.6551 4.0145 28 1 4.4985 -0.7528 6.6379 29 1 0.7477 -3.6512 3.7018 30 1 0.4965 -3.4068 0.2272 31 1 -0.3798 -2.0355 0.9483 32 1 -0.1859 -4.6809 2.1290 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396035857.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:20 Heat of formation + Delta-G solvation = -104.774267 kcal Electronic energy + Delta-G solvation = -18168.373683 eV Core-core repulsion = 15118.450964 eV Total energy + Delta-G solvation = -3049.922719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.89981 -39.65334 -37.46026 -36.94328 -35.69590 -33.48852 -31.72284 -31.13287 -29.06307 -27.05893 -25.71016 -22.51706 -22.13276 -20.54145 -19.19472 -17.78376 -17.53506 -17.09483 -16.83899 -16.64640 -15.77921 -15.65615 -15.23755 -14.93098 -14.56001 -14.40200 -13.85007 -13.62491 -13.25675 -13.11043 -12.97619 -12.81828 -12.74176 -12.39596 -12.03665 -11.93294 -11.81240 -11.50151 -11.33346 -11.08021 -10.85878 -10.69410 -9.36566 -9.16557 -8.68989 -6.40732 0.55355 0.98945 1.04969 1.28575 1.36789 1.47786 1.50915 2.17137 2.60608 3.07429 3.64408 3.68760 3.82869 3.97292 4.09549 4.17525 4.45095 4.56238 4.57756 4.62461 4.73525 5.04694 5.08549 5.13218 5.25587 5.38696 5.63519 5.83577 6.04346 6.05926 6.27455 6.40427 6.64024 6.86876 6.88746 6.96374 8.26699 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.021196 B = 0.006261 C = 0.005424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.666999 B = 4471.034974 C = 5160.708166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.355 3.645 3 O -0.482 6.482 4 C 0.016 3.984 5 H 0.154 0.846 6 Cl -0.176 7.176 7 C -0.223 4.223 8 C -0.083 4.083 9 C -0.196 4.196 10 C 0.089 3.911 11 C -0.492 4.492 12 H 0.083 0.917 13 C 0.033 3.967 14 N -0.823 5.823 15 Si 0.982 3.018 16 H -0.259 1.259 17 H -0.272 1.272 18 H -0.256 1.256 19 C -0.225 4.225 20 C -0.077 4.077 21 C 0.111 3.889 22 O -0.576 6.576 23 H 0.103 0.897 24 H 0.105 0.895 25 H 0.124 0.876 26 H 0.095 0.905 27 H 0.094 0.906 28 H 0.288 0.712 29 H 0.114 0.886 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.530 -3.212 -8.930 11.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.231 3.769 3 O -0.357 6.357 4 C -0.028 4.028 5 H 0.172 0.828 6 Cl -0.149 7.149 7 C -0.225 4.225 8 C -0.102 4.102 9 C -0.215 4.215 10 C 0.087 3.913 11 C -0.520 4.520 12 H 0.102 0.898 13 C -0.183 4.183 14 N -0.448 5.448 15 Si 0.803 3.197 16 H -0.183 1.183 17 H -0.196 1.196 18 H -0.180 1.180 19 C -0.244 4.244 20 C -0.078 4.078 21 C 0.034 3.966 22 O -0.383 6.383 23 H 0.122 0.878 24 H 0.124 0.876 25 H 0.142 0.858 26 H 0.113 0.887 27 H 0.112 0.888 28 H 0.099 0.901 29 H 0.132 0.868 30 H 0.101 0.899 31 H 0.134 0.866 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -6.403 -1.948 -8.958 11.182 hybrid contribution 1.442 -0.394 1.095 1.853 sum -4.961 -2.342 -7.862 9.587 Atomic orbital electron populations 1.22465 0.89633 1.07383 1.05981 1.25329 0.94042 0.88695 0.68842 1.90416 1.72916 1.35613 1.36723 1.23546 0.84323 0.99465 0.95478 0.82833 1.98697 1.33415 1.97786 1.85016 1.18485 0.99245 1.10691 0.94034 1.20761 0.97205 0.98140 0.94076 1.21235 1.00288 1.05485 0.94506 1.18014 0.90319 0.89696 0.93283 1.19922 1.26676 1.10072 0.95371 0.89848 1.26832 0.93440 0.94312 1.03680 1.69889 1.27780 1.09681 1.37495 0.85241 0.79255 0.78918 0.76297 1.18342 1.19608 1.17986 1.20931 0.98239 1.09733 0.95489 1.20208 0.96021 0.96561 0.94972 1.21626 0.88250 0.94323 0.92404 1.86431 1.42770 1.32048 1.77061 0.87835 0.87600 0.85809 0.88664 0.88750 0.90134 0.86761 0.89863 0.86574 0.76237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.81 8.61 71.24 0.61 -3.20 16 2 C 0.35 10.61 6.41 29.10 0.19 10.80 16 3 O -0.48 -18.42 17.01 -1.45 -0.02 -18.45 16 4 C 0.02 0.48 2.84 29.10 0.08 0.56 16 5 H 0.15 3.32 6.51 -2.39 -0.02 3.30 16 6 Cl -0.18 -6.00 26.15 -2.72 -0.07 -6.07 16 7 C -0.22 -8.61 5.01 -19.68 -0.10 -8.71 16 8 C -0.08 -3.90 9.12 22.22 0.20 -3.70 16 9 C -0.20 -10.31 8.69 22.73 0.20 -10.12 16 10 C 0.09 4.62 5.57 -21.29 -0.12 4.50 16 11 C -0.49 -25.56 9.06 23.46 0.21 -25.34 16 12 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 13 C 0.03 1.63 5.16 85.26 0.44 2.07 16 14 N -0.82 -43.35 10.95 21.83 0.24 -43.11 16 15 Si 0.98 37.57 29.59 68.60 2.03 39.60 16 16 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 17 H -0.27 -10.00 7.11 99.48 0.71 -9.29 16 18 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 19 C -0.22 -9.87 8.95 22.73 0.20 -9.67 16 20 C -0.08 -2.81 5.86 -19.92 -0.12 -2.93 16 21 C 0.11 2.81 6.17 71.24 0.44 3.25 16 22 O -0.58 -15.46 12.55 -148.98 -1.87 -17.33 16 23 H 0.10 2.12 7.67 -2.39 -0.02 2.10 16 24 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.12 1.45 6.97 -2.39 -0.02 1.43 16 26 H 0.10 4.46 6.71 -2.91 -0.02 4.44 16 27 H 0.09 5.34 6.18 -2.91 -0.02 5.33 16 28 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 29 H 0.11 4.70 6.74 -2.91 -0.02 4.68 16 30 H 0.08 1.59 7.19 -2.39 -0.02 1.57 16 31 H 0.12 2.47 4.52 -2.39 -0.01 2.46 16 32 H 0.39 8.58 8.37 -74.06 -0.62 7.96 16 Total: -1.00 -65.67 284.21 3.10 -62.57 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.55 Total: 25.27 kcal Atomic # 6 Polarization: -44.72 SS G_CDS: 2.24 Total: -42.48 kcal Atomic # 7 Polarization: -43.35 SS G_CDS: 0.24 Total: -43.11 kcal Atomic # 8 Polarization: -33.88 SS G_CDS: -1.89 Total: -35.78 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 17 Polarization: -6.00 SS G_CDS: -0.07 Total: -6.07 kcal Total: -65.67 3.10 -62.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396035857.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.208 kcal (2) G-P(sol) polarization free energy of solvation -65.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds