Wall clock time and date at job start Mon Mar 30 2020 06:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20758 * 119.99752 * 2 1 4 4 C 1.50697 * 119.99815 * 180.27201 * 2 1 3 5 5 H 1.09002 * 109.47306 * 34.72472 * 4 2 1 6 6 Cl 1.80301 * 109.46800 * 154.72820 * 4 2 1 7 7 C 1.50698 * 109.47255 * 274.72416 * 4 2 1 8 8 C 1.38660 * 119.88056 * 294.73144 * 7 4 2 9 9 C 1.38605 * 120.50378 * 179.72041 * 8 7 4 10 10 C 1.37639 * 120.24984 * 0.54772 * 9 8 7 11 11 C 1.50700 * 120.13187 * 179.74914 * 10 9 8 12 12 O 1.42896 * 109.46963 * 359.97438 * 11 10 9 13 13 C 1.40700 * 119.74318 * 359.73190 * 10 9 8 14 14 C 1.41399 * 120.24561 * 179.97438 * 13 10 9 15 15 H 1.07995 * 119.99953 * 24.88816 * 14 13 10 16 16 C 1.39948 * 119.99984 * 204.89962 * 14 13 10 17 17 N 1.30827 * 119.99775 * 17.42560 * 16 14 13 18 18 Si 1.86795 * 119.99831 * 197.42894 * 16 14 13 19 19 H 1.48505 * 109.47350 * 59.99736 * 18 16 14 20 20 H 1.48506 * 109.47232 * 179.97438 * 18 16 14 21 21 H 1.48505 * 109.47145 * 299.99496 * 18 16 14 22 22 C 1.37603 * 119.87612 * 115.00127 * 7 4 2 23 23 H 1.08996 * 109.46886 * 0.02562 * 1 2 3 24 24 H 1.09003 * 109.46652 * 120.00288 * 1 2 3 25 25 H 1.08996 * 109.47127 * 239.99620 * 1 2 3 26 26 H 1.07998 * 119.74410 * 359.97438 * 8 7 4 27 27 H 1.08000 * 119.88031 * 180.27799 * 9 8 7 28 28 H 1.08991 * 109.47371 * 119.98240 * 11 10 9 29 29 H 1.09004 * 109.46982 * 239.98236 * 11 10 9 30 30 H 0.96697 * 114.00519 * 180.02562 * 12 11 10 31 31 H 0.97003 * 119.99388 * 180.02562 * 17 16 14 32 32 H 1.08004 * 120.12358 * 0.02562 * 22 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0062 5 1 1.7107 -2.0393 -0.5951 6 17 3.8922 -1.0535 -0.7307 7 6 2.4103 -1.8054 1.4074 8 6 3.1724 -1.0880 2.3169 9 6 3.3142 -1.5332 3.6219 10 6 2.7075 -2.7007 4.0259 11 6 2.8681 -3.1853 5.4439 12 8 3.6893 -2.2688 6.1703 13 6 1.9365 -3.4400 3.1101 14 6 1.3090 -4.6411 3.5137 15 1 1.0678 -4.8012 4.5541 16 6 1.0008 -5.6226 2.5649 17 7 1.5773 -5.6012 1.3907 18 14 -0.2337 -6.9631 2.9751 19 1 -1.5468 -6.3464 3.2929 20 1 -0.3832 -7.8718 1.8100 21 1 0.2469 -7.7366 4.1482 22 6 1.7948 -2.9753 1.7893 23 1 -0.3633 1.0276 -0.0005 24 1 -0.3633 -0.5139 -0.8900 25 1 -0.3633 -0.5139 0.8899 26 1 3.6559 -0.1733 2.0072 27 1 3.9065 -0.9642 4.3231 28 1 1.8891 -3.2509 5.9185 29 1 3.3370 -4.1693 5.4407 30 1 3.8360 -2.5182 7.0929 31 1 1.3634 -6.2814 0.7330 32 1 1.2056 -3.5350 1.0780 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396037190.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:54 Heat of formation + Delta-G solvation = -106.725546 kcal Electronic energy + Delta-G solvation = -18040.429589 eV Core-core repulsion = 14990.422256 eV Total energy + Delta-G solvation = -3050.007333 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.77002 -39.64425 -37.48861 -36.85080 -35.61500 -33.73602 -31.65964 -31.06873 -28.73213 -27.43923 -25.39691 -23.05407 -21.57101 -20.55841 -18.90045 -18.26858 -17.18634 -16.92979 -16.63793 -16.49725 -16.08935 -15.61731 -15.27473 -15.14715 -14.42120 -14.28236 -13.76035 -13.45185 -13.28212 -13.16129 -13.02498 -12.80538 -12.73879 -12.47349 -12.11268 -11.96372 -11.75205 -11.36837 -11.28342 -11.05708 -10.98464 -10.64062 -9.33551 -9.14013 -8.61991 -6.32942 0.43110 0.93749 1.07795 1.35829 1.45057 1.53955 1.59136 2.23547 2.67295 3.05301 3.60229 3.67368 3.77225 3.98213 4.06193 4.46002 4.53981 4.58474 4.62961 4.69082 4.80679 4.91835 5.10078 5.18670 5.32426 5.46335 5.63012 5.90486 6.06298 6.08387 6.32476 6.36403 6.60335 6.92253 6.97694 7.07138 8.33885 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.007448 C = 0.005856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.409352 B = 3758.253779 C = 4780.655080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.363 3.637 3 O -0.473 6.473 4 C 0.000 4.000 5 H 0.141 0.859 6 Cl -0.171 7.171 7 C -0.083 4.083 8 C -0.224 4.224 9 C -0.079 4.079 10 C -0.213 4.213 11 C 0.151 3.849 12 O -0.587 6.587 13 C 0.090 3.910 14 C -0.487 4.487 15 H 0.083 0.917 16 C 0.043 3.957 17 N -0.817 5.817 18 Si 0.975 3.025 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.263 1.263 22 C -0.151 4.151 23 H 0.097 0.903 24 H 0.125 0.875 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.051 0.949 29 H 0.044 0.956 30 H 0.393 0.607 31 H 0.290 0.710 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.003 1.334 -0.345 5.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.239 3.761 3 O -0.347 6.347 4 C -0.044 4.044 5 H 0.159 0.841 6 Cl -0.145 7.145 7 C -0.084 4.084 8 C -0.243 4.243 9 C -0.097 4.097 10 C -0.214 4.214 11 C 0.074 3.926 12 O -0.395 6.395 13 C 0.088 3.912 14 C -0.515 4.515 15 H 0.101 0.899 16 C -0.173 4.173 17 N -0.442 5.442 18 Si 0.797 3.203 19 H -0.183 1.183 20 H -0.196 1.196 21 H -0.187 1.187 22 C -0.171 4.171 23 H 0.116 0.884 24 H 0.143 0.857 25 H 0.120 0.880 26 H 0.110 0.890 27 H 0.124 0.876 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.242 0.758 31 H 0.101 0.899 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.523 2.085 -1.208 5.125 hybrid contribution 0.044 -1.011 0.551 1.153 sum -4.479 1.074 -0.657 4.653 Atomic orbital electron populations 1.22285 0.89423 1.06405 1.06595 1.25044 0.93965 0.88051 0.69032 1.90394 1.72839 1.35018 1.36435 1.23691 0.84825 1.00177 0.95724 0.84118 1.98700 1.33111 1.97630 1.85018 1.19022 1.01280 0.96547 0.91563 1.20387 1.07629 1.01957 0.94345 1.20482 0.98457 0.95858 0.94916 1.19979 1.05376 0.99609 0.96456 1.20424 0.92733 0.90366 0.89066 1.86406 1.72655 1.51993 1.28440 1.17595 0.89638 0.92496 0.91501 1.19740 1.35415 1.00320 0.96065 0.89869 1.26642 0.95953 1.00713 0.93985 1.69844 1.34420 1.33356 1.06626 0.85340 0.78909 0.77178 0.78908 1.18254 1.19563 1.18734 1.21131 1.03650 0.94568 0.97753 0.88402 0.85717 0.88023 0.88999 0.87567 0.93128 0.93787 0.75838 0.89875 0.86077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.36 10.26 71.24 0.73 -3.63 16 2 C 0.36 11.91 6.17 29.10 0.18 12.09 16 3 O -0.47 -18.24 17.00 -1.44 -0.02 -18.27 16 4 C 0.00 0.00 3.28 29.10 0.10 0.09 16 5 H 0.14 4.44 7.87 -2.39 -0.02 4.42 16 6 Cl -0.17 -6.54 27.48 -2.72 -0.07 -6.62 16 7 C -0.08 -3.63 4.83 -19.91 -0.10 -3.72 16 8 C -0.22 -10.27 8.99 22.46 0.20 -10.07 16 9 C -0.08 -3.70 9.36 22.22 0.21 -3.49 16 10 C -0.21 -10.04 5.94 -19.40 -0.12 -10.15 16 11 C 0.15 5.96 6.23 71.24 0.44 6.41 16 12 O -0.59 -20.51 12.14 -148.98 -1.81 -22.31 16 13 C 0.09 4.45 5.57 -21.29 -0.12 4.33 16 14 C -0.49 -23.30 8.50 23.46 0.20 -23.10 16 15 H 0.08 3.78 7.00 -2.91 -0.02 3.76 16 16 C 0.04 1.95 5.15 85.26 0.44 2.39 16 17 N -0.82 -38.39 10.96 21.83 0.24 -38.15 16 18 Si 0.98 34.15 29.59 68.60 2.03 36.18 16 19 H -0.26 -8.80 7.11 99.48 0.71 -8.09 16 20 H -0.27 -9.13 7.11 99.48 0.71 -8.42 16 21 H -0.26 -9.06 7.11 99.48 0.71 -8.35 16 22 C -0.15 -7.13 8.31 22.73 0.19 -6.94 16 23 H 0.10 1.99 8.12 -2.39 -0.02 1.98 16 24 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 25 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.09 4.21 7.96 -2.91 -0.02 4.19 16 27 H 0.11 4.79 7.00 -2.91 -0.02 4.77 16 28 H 0.05 1.87 7.80 -2.39 -0.02 1.86 16 29 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.39 8.86 9.12 -74.06 -0.68 8.19 16 31 H 0.29 12.37 8.30 -92.71 -0.77 11.60 16 32 H 0.12 5.69 6.06 -2.91 -0.02 5.67 16 Total: -1.00 -60.43 294.72 3.20 -57.23 By element: Atomic # 1 Polarization: 27.23 SS G_CDS: 0.48 Total: 27.71 kcal Atomic # 6 Polarization: -38.13 SS G_CDS: 2.36 Total: -35.78 kcal Atomic # 7 Polarization: -38.39 SS G_CDS: 0.24 Total: -38.15 kcal Atomic # 8 Polarization: -38.75 SS G_CDS: -1.83 Total: -40.58 kcal Atomic # 14 Polarization: 34.15 SS G_CDS: 2.03 Total: 36.18 kcal Atomic # 17 Polarization: -6.54 SS G_CDS: -0.07 Total: -6.62 kcal Total: -60.43 3.20 -57.23 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396037190.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.496 kcal (2) G-P(sol) polarization free energy of solvation -60.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds