Wall clock time and date at job start Mon Mar 30 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08997 * 109.46677 * 2 1 4 4 Cl 1.80300 * 109.46928 * 120.00290 * 2 1 3 5 5 C 1.50704 * 109.46962 * 240.00204 * 2 1 3 6 6 O 1.21249 * 119.99606 * 102.06852 * 5 2 1 7 7 C 1.47212 * 120.00106 * 282.06565 * 5 2 1 8 8 C 1.39321 * 120.05464 * 5.58322 * 7 5 2 9 9 C 1.40434 * 119.56696 * 180.02562 * 8 7 5 10 10 C 1.41449 * 120.16625 * 179.97438 * 9 8 7 11 11 H 1.07998 * 119.99887 * 24.96901 * 10 9 8 12 12 C 1.39930 * 119.99670 * 204.97234 * 10 9 8 13 13 N 1.30825 * 120.00236 * 17.17940 * 12 10 9 14 14 Si 1.86800 * 119.99592 * 197.17945 * 12 10 9 15 15 H 1.48499 * 109.47275 * 90.00204 * 14 12 10 16 16 H 1.48500 * 109.47020 * 209.99935 * 14 12 10 17 17 H 1.48496 * 109.47382 * 329.99993 * 14 12 10 18 18 C 1.40808 * 119.66719 * 0.02562 * 9 8 7 19 19 C 1.37751 * 120.10104 * 359.97438 * 18 9 8 20 20 C 1.38303 * 120.44128 * 359.76864 * 19 18 9 21 21 C 1.50703 * 119.83539 * 180.25425 * 20 19 18 22 22 O 1.42901 * 109.47173 * 0.25635 * 21 20 19 23 23 H 1.08996 * 109.47292 * 299.99480 * 1 2 3 24 24 H 1.09005 * 109.46967 * 59.99784 * 1 2 3 25 25 H 1.09002 * 109.46899 * 179.97438 * 1 2 3 26 26 H 1.08003 * 120.21921 * 359.97438 * 8 7 5 27 27 H 0.97002 * 120.00432 * 179.97438 * 13 12 10 28 28 H 1.08005 * 119.95305 * 180.02562 * 18 9 8 29 29 H 1.07997 * 119.77995 * 180.02562 * 19 18 9 30 30 H 1.08998 * 109.46858 * 120.25762 * 21 20 19 31 31 H 1.09000 * 109.47176 * 240.25562 * 21 20 19 32 32 H 0.96691 * 113.99999 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1310 -0.8500 1.4721 5 6 2.0324 -0.7104 -1.2305 6 8 2.4414 -0.0702 -2.1755 7 6 2.0265 -2.1815 -1.2852 8 6 1.4508 -2.9158 -0.2506 9 6 1.4513 -4.3188 -0.3129 10 6 0.8709 -5.0769 0.7307 11 1 0.0992 -4.6425 1.3489 12 6 1.2965 -6.3896 0.9620 13 7 2.4317 -6.8068 0.4631 14 14 0.2438 -7.5465 1.9832 15 1 -0.6987 -8.2726 1.0946 16 1 1.1170 -8.5233 2.6823 17 1 -0.5237 -6.7634 2.9846 18 6 2.0336 -4.9670 -1.4191 19 6 2.5989 -4.2274 -2.4344 20 6 2.5961 -2.8455 -2.3799 21 6 3.2134 -2.0497 -3.5010 22 8 3.7229 -2.9420 -4.4942 23 1 -0.3634 0.5137 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.0078 -2.4095 0.5943 27 1 2.7270 -7.7167 0.6238 28 1 2.0362 -6.0458 -1.4720 29 1 3.0437 -4.7300 -3.2805 30 1 2.4575 -1.4033 -3.9468 31 1 4.0272 -1.4400 -3.1086 32 1 4.1359 -2.4978 -5.2472 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396037808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:44 Heat of formation + Delta-G solvation = -98.991451 kcal Electronic energy + Delta-G solvation = -18237.046873 eV Core-core repulsion = 15187.374915 eV Total energy + Delta-G solvation = -3049.671958 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11982 -38.99996 -37.62968 -37.15504 -35.46057 -33.75987 -32.19408 -31.34475 -28.57687 -26.37907 -25.10364 -23.68866 -21.98643 -20.91345 -19.05648 -18.13260 -17.34708 -16.98626 -16.58398 -16.32701 -16.25551 -15.64449 -15.33730 -14.89760 -14.69390 -14.17668 -13.77808 -13.65197 -13.30234 -13.14876 -12.89584 -12.81572 -12.69393 -12.47081 -12.14889 -12.06468 -11.81473 -11.57755 -11.20926 -10.99221 -10.85652 -10.32028 -9.43005 -9.28373 -8.62270 -6.31881 -0.07599 0.92834 1.03221 1.40718 1.48668 1.53579 1.79426 2.22145 2.71627 2.85520 3.46791 3.63145 3.76189 3.82081 4.31112 4.34242 4.47300 4.58779 4.68866 4.69238 4.74492 5.01241 5.07147 5.14884 5.19972 5.35810 5.55750 5.75930 5.98670 6.04670 6.18791 6.41687 6.63109 6.91735 6.93336 7.01648 8.34842 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.016639 B = 0.007830 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.426167 B = 3575.164949 C = 4903.209687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.041 4.041 3 H 0.147 0.853 4 Cl -0.156 7.156 5 C 0.404 3.596 6 O -0.471 6.471 7 C -0.157 4.157 8 C -0.161 4.161 9 C 0.064 3.936 10 C -0.488 4.488 11 H 0.084 0.916 12 C 0.034 3.966 13 N -0.829 5.829 14 Si 0.979 3.021 15 H -0.264 1.264 16 H -0.273 1.273 17 H -0.254 1.254 18 C -0.156 4.156 19 C -0.105 4.105 20 C -0.166 4.166 21 C 0.152 3.848 22 O -0.588 6.588 23 H 0.104 0.896 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.141 0.859 27 H 0.287 0.713 28 H 0.105 0.895 29 H 0.107 0.893 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.994 9.582 -0.441 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.086 4.086 3 H 0.165 0.835 4 Cl -0.130 7.130 5 C 0.285 3.715 6 O -0.350 6.350 7 C -0.158 4.158 8 C -0.180 4.180 9 C 0.062 3.938 10 C -0.518 4.518 11 H 0.102 0.898 12 C -0.181 4.181 13 N -0.455 5.455 14 Si 0.800 3.200 15 H -0.189 1.189 16 H -0.197 1.197 17 H -0.178 1.178 18 C -0.175 4.175 19 C -0.123 4.123 20 C -0.167 4.167 21 C 0.075 3.925 22 O -0.396 6.396 23 H 0.123 0.877 24 H 0.110 0.890 25 H 0.085 0.915 26 H 0.158 0.842 27 H 0.098 0.902 28 H 0.123 0.877 29 H 0.125 0.875 30 H 0.075 0.925 31 H 0.064 0.936 32 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.805 9.223 -0.399 9.649 hybrid contribution 0.255 -0.609 0.073 0.664 sum -2.549 8.615 -0.326 8.990 Atomic orbital electron populations 1.22154 0.88544 1.04661 1.05629 1.24712 1.00525 0.99154 0.84182 0.83520 1.98751 1.89969 1.80956 1.43283 1.22704 0.72775 0.88826 0.87225 1.90443 1.37109 1.69434 1.37965 1.19786 1.05709 0.93352 0.96944 1.22134 1.04072 0.93482 0.98301 1.17968 0.91239 0.92297 0.92291 1.19802 1.19804 0.97891 1.14260 0.89814 1.26741 0.94991 0.99926 0.96408 1.69868 1.18309 1.18890 1.38416 0.85232 0.78623 0.77557 0.78538 1.18857 1.19736 1.17768 1.21599 1.02607 0.99471 0.93862 1.20572 1.00036 0.93516 0.98214 1.19663 1.06329 0.93869 0.96864 1.20634 0.95901 0.89055 0.86928 1.86430 1.80044 1.37924 1.35231 0.87714 0.88997 0.91506 0.84183 0.90216 0.87723 0.87527 0.92540 0.93633 0.75685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.14 71.98 0.66 -2.72 16 2 C -0.04 -1.12 3.49 29.85 0.10 -1.02 16 3 H 0.15 3.14 8.14 -2.39 -0.02 3.12 16 4 Cl -0.16 -4.96 24.70 -2.72 -0.07 -5.02 16 5 C 0.40 14.32 6.15 28.05 0.17 14.49 16 6 O -0.47 -17.26 14.15 -2.93 -0.04 -17.30 16 7 C -0.16 -6.76 5.71 -20.20 -0.12 -6.88 16 8 C -0.16 -7.32 7.47 23.07 0.17 -7.15 16 9 C 0.06 3.36 5.57 -21.33 -0.12 3.24 16 10 C -0.49 -25.21 9.05 23.47 0.21 -25.00 16 11 H 0.08 4.09 7.90 -2.91 -0.02 4.07 16 12 C 0.03 1.67 5.15 85.25 0.44 2.11 16 13 N -0.83 -43.16 10.94 21.82 0.24 -42.93 16 14 Si 0.98 37.47 29.59 68.60 2.03 39.50 16 15 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 16 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.25 -9.32 7.11 99.48 0.71 -8.61 16 18 C -0.16 -8.28 8.68 22.78 0.20 -8.08 16 19 C -0.11 -5.20 9.34 22.17 0.21 -4.99 16 20 C -0.17 -7.56 5.94 -19.39 -0.12 -7.68 16 21 C 0.15 5.82 5.68 71.24 0.40 6.23 16 22 O -0.59 -20.66 12.11 -148.98 -1.80 -22.47 16 23 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 24 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 25 H 0.07 1.75 6.56 -2.39 -0.02 1.74 16 26 H 0.14 5.78 4.09 -2.91 -0.01 5.76 16 27 H 0.29 13.62 8.30 -92.71 -0.77 12.85 16 28 H 0.10 5.82 6.15 -2.91 -0.02 5.80 16 29 H 0.11 5.11 6.97 -2.91 -0.02 5.09 16 30 H 0.06 2.08 7.20 -2.39 -0.02 2.07 16 31 H 0.05 1.73 7.47 -2.39 -0.02 1.71 16 32 H 0.39 8.98 9.12 -74.06 -0.68 8.30 16 Total: -1.00 -61.88 282.37 3.07 -58.81 By element: Atomic # 1 Polarization: 26.37 SS G_CDS: 0.49 Total: 26.86 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 2.22 Total: -37.45 kcal Atomic # 7 Polarization: -43.16 SS G_CDS: 0.24 Total: -42.93 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -1.85 Total: -39.76 kcal Atomic # 14 Polarization: 37.47 SS G_CDS: 2.03 Total: 39.50 kcal Atomic # 17 Polarization: -4.96 SS G_CDS: -0.07 Total: -5.02 kcal Total: -61.88 3.07 -58.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396037808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.184 kcal (2) G-P(sol) polarization free energy of solvation -61.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds