Wall clock time and date at job start Mon Mar 30 2020 06:41:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20769 * 119.99789 * 2 1 4 4 C 1.50700 * 120.00538 * 180.02562 * 2 1 3 5 5 H 1.08996 * 109.47494 * 157.70940 * 4 2 1 6 6 Cl 1.80299 * 109.46993 * 37.70695 * 4 2 1 7 7 C 1.50703 * 109.46674 * 277.70855 * 4 2 1 8 8 C 1.38654 * 119.87510 * 92.95613 * 7 4 2 9 9 C 1.38617 * 120.50024 * 180.02562 * 8 7 4 10 10 C 1.37641 * 120.24768 * 359.97438 * 9 8 7 11 11 C 1.40696 * 119.74318 * 359.75176 * 10 9 8 12 12 C 1.41394 * 120.24070 * 180.27626 * 11 10 9 13 13 H 1.08004 * 119.99508 * 148.68991 * 12 11 10 14 14 C 1.39948 * 120.00136 * 328.68340 * 12 11 10 15 15 N 1.30819 * 119.99717 * 161.94592 * 14 12 11 16 16 Si 1.86793 * 120.00139 * 341.94830 * 14 12 11 17 17 H 1.48498 * 109.47328 * 92.87649 * 16 14 12 18 18 H 1.48499 * 109.47479 * 212.88052 * 16 14 12 19 19 H 1.48503 * 109.47236 * 332.87938 * 16 14 12 20 20 C 1.37593 * 119.87478 * 272.96878 * 7 4 2 21 21 C 1.50700 * 120.12750 * 359.95897 * 20 7 4 22 22 O 1.42900 * 109.47266 * 273.81233 * 21 20 7 23 23 H 1.08997 * 109.47056 * 269.99456 * 1 2 3 24 24 H 1.09000 * 109.47421 * 29.99790 * 1 2 3 25 25 H 1.09001 * 109.46662 * 150.00126 * 1 2 3 26 26 H 1.08003 * 119.75312 * 359.97438 * 8 7 4 27 27 H 1.08005 * 119.87374 * 180.02562 * 9 8 7 28 28 H 1.07998 * 120.12139 * 180.02562 * 10 9 8 29 29 H 0.97003 * 120.00233 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.47029 * 153.81555 * 21 20 7 31 31 H 1.09000 * 109.47080 * 33.81491 * 21 20 7 32 32 H 0.96699 * 113.99965 * 294.47831 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3050 -0.0006 5 1 3.2657 -1.1441 -0.3903 6 17 1.3965 -2.4975 -1.0408 7 6 2.3467 -1.8359 1.4072 8 6 1.3874 -2.7234 1.8706 9 6 1.4538 -3.2193 3.1633 10 6 2.4755 -2.8351 4.0017 11 6 3.4577 -1.9396 3.5404 12 6 4.5151 -1.5424 4.3908 13 1 5.4835 -1.3071 3.9745 14 6 4.3069 -1.4542 5.7719 15 7 5.3294 -1.4383 6.5878 16 14 2.5691 -1.3592 6.4503 17 1 2.0901 -2.7261 6.7779 18 1 2.5621 -0.5246 7.6785 19 1 1.6734 -0.7513 5.4337 20 6 3.3768 -1.4379 2.2280 21 6 4.4183 -0.4737 1.7213 22 8 5.4502 -1.1975 1.0481 23 1 -0.3633 -0.0001 1.0276 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 0.5819 -3.0299 1.2197 27 1 0.7013 -3.9104 3.5136 28 1 2.5254 -3.2231 5.0084 29 1 5.1852 -1.3768 7.5451 30 1 4.8467 0.0729 2.5614 31 1 3.9561 0.2293 1.0282 32 1 5.9617 -1.7813 1.6249 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396039944.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:36 Heat of formation + Delta-G solvation = -104.174988 kcal Electronic energy + Delta-G solvation = -18527.745852 eV Core-core repulsion = 15477.849119 eV Total energy + Delta-G solvation = -3049.896733 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.14365 -39.83995 -37.38948 -37.17978 -35.67072 -33.67687 -32.51414 -31.25936 -28.52057 -27.38442 -26.13305 -22.89915 -21.82760 -20.75254 -19.12399 -18.22620 -17.62402 -17.25179 -16.87537 -16.48501 -16.34549 -15.90836 -15.23682 -15.11401 -14.76492 -14.40094 -14.00153 -13.87140 -13.56107 -13.19909 -13.15496 -13.02186 -12.77685 -12.39862 -12.15964 -12.00589 -11.96480 -11.61844 -11.40453 -11.10228 -10.78057 -10.77637 -9.49823 -9.42640 -8.92008 -6.54467 0.25253 0.68291 0.80073 1.15832 1.25501 1.38719 1.46332 2.08517 2.49857 2.88585 3.30703 3.55118 3.71591 3.83302 4.14032 4.25118 4.37061 4.42965 4.58372 4.60256 4.77668 4.83731 4.85346 5.03131 5.08211 5.23217 5.49022 5.73879 5.78873 5.88963 6.13949 6.20024 6.32704 6.64193 6.74168 6.78450 8.15125 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022757 B = 0.007330 C = 0.006777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.114128 B = 3819.120050 C = 4130.366817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.369 3.631 3 O -0.474 6.474 4 C -0.004 4.004 5 H 0.120 0.880 6 Cl -0.132 7.132 7 C -0.051 4.051 8 C -0.201 4.201 9 C -0.077 4.077 10 C -0.240 4.240 11 C 0.085 3.915 12 C -0.478 4.478 13 H 0.065 0.935 14 C 0.051 3.949 15 N -0.844 5.844 16 Si 0.958 3.042 17 H -0.254 1.254 18 H -0.281 1.281 19 H -0.255 1.255 20 C -0.218 4.218 21 C 0.127 3.873 22 O -0.576 6.576 23 H 0.110 0.890 24 H 0.105 0.895 25 H 0.109 0.891 26 H 0.140 0.860 27 H 0.135 0.865 28 H 0.102 0.898 29 H 0.293 0.707 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 -1.160 -8.404 13.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C 0.246 3.754 3 O -0.349 6.349 4 C -0.048 4.048 5 H 0.138 0.862 6 Cl -0.105 7.105 7 C -0.052 4.052 8 C -0.219 4.219 9 C -0.095 4.095 10 C -0.259 4.259 11 C 0.082 3.918 12 C -0.507 4.507 13 H 0.084 0.916 14 C -0.164 4.164 15 N -0.470 5.470 16 Si 0.781 3.219 17 H -0.179 1.179 18 H -0.208 1.208 19 H -0.179 1.179 20 C -0.219 4.219 21 C 0.050 3.950 22 O -0.383 6.383 23 H 0.128 0.872 24 H 0.124 0.876 25 H 0.128 0.872 26 H 0.158 0.842 27 H 0.153 0.847 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -10.621 -0.337 -8.763 13.774 hybrid contribution 0.323 -0.388 1.230 1.329 sum -10.298 -0.725 -7.534 12.780 Atomic orbital electron populations 1.22350 0.90090 1.06972 1.06291 1.24997 0.94299 0.87716 0.68369 1.90424 1.72899 1.34515 1.37045 1.23591 0.99397 0.89860 0.91975 0.86225 1.98684 1.79854 1.62279 1.69733 1.18953 0.96240 0.98652 0.91326 1.20817 1.01320 1.03096 0.96710 1.21052 0.96767 0.98046 0.93602 1.21342 1.00345 1.03784 1.00471 1.17663 0.91878 0.90211 0.92002 1.19389 0.97911 1.41996 0.91423 0.91642 1.26744 1.02212 0.90599 0.96878 1.69711 1.34762 1.36629 1.05866 0.85608 0.78875 0.79586 0.77814 1.17908 1.20757 1.17855 1.20347 0.99983 1.05351 0.96256 1.20933 0.86463 0.91822 0.95789 1.86352 1.49149 1.62253 1.40530 0.87192 0.87608 0.87220 0.84237 0.84707 0.88066 0.89616 0.93917 0.89305 0.76900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.17 10.13 71.23 0.72 -3.45 16 2 C 0.37 10.98 6.23 29.10 0.18 11.16 16 3 O -0.47 -16.93 16.21 -1.48 -0.02 -16.95 16 4 C 0.00 -0.11 2.70 29.10 0.08 -0.03 16 5 H 0.12 4.11 6.75 -2.39 -0.02 4.09 16 6 Cl -0.13 -3.39 24.97 -2.72 -0.07 -3.46 16 7 C -0.05 -1.88 4.98 -19.92 -0.10 -1.98 16 8 C -0.20 -6.79 9.16 22.46 0.21 -6.59 16 9 C -0.08 -2.77 10.02 22.22 0.22 -2.55 16 10 C -0.24 -10.39 7.26 22.73 0.17 -10.23 16 11 C 0.09 4.01 5.06 -21.29 -0.11 3.90 16 12 C -0.48 -24.82 8.48 23.46 0.20 -24.62 16 13 H 0.07 3.61 7.22 -2.91 -0.02 3.59 16 14 C 0.05 2.59 5.40 85.26 0.46 3.05 16 15 N -0.84 -44.28 13.93 21.83 0.30 -43.97 16 16 Si 0.96 40.54 24.59 68.60 1.69 42.23 16 17 H -0.25 -10.06 6.61 99.48 0.66 -9.40 16 18 H -0.28 -11.37 7.11 99.48 0.71 -10.67 16 19 H -0.25 -10.99 7.00 99.48 0.70 -10.29 16 20 C -0.22 -9.37 5.56 -19.41 -0.11 -9.47 16 21 C 0.13 5.34 5.80 71.24 0.41 5.75 16 22 O -0.58 -23.03 13.45 -148.98 -2.00 -25.03 16 23 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 24 H 0.11 1.83 8.14 -2.39 -0.02 1.82 16 25 H 0.11 1.92 6.39 -2.39 -0.02 1.90 16 26 H 0.14 3.88 6.69 -2.91 -0.02 3.86 16 27 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 28 H 0.10 4.41 4.86 -2.91 -0.01 4.39 16 29 H 0.29 13.92 8.30 -92.71 -0.77 13.15 16 30 H 0.04 1.93 6.70 -2.39 -0.02 1.91 16 31 H 0.09 3.63 5.20 -2.39 -0.01 3.62 16 32 H 0.38 14.05 9.11 -74.06 -0.67 13.38 16 Total: -1.00 -57.47 280.23 2.67 -54.80 By element: Atomic # 1 Polarization: 26.99 SS G_CDS: 0.44 Total: 27.43 kcal Atomic # 6 Polarization: -37.38 SS G_CDS: 2.33 Total: -35.04 kcal Atomic # 7 Polarization: -44.28 SS G_CDS: 0.30 Total: -43.97 kcal Atomic # 8 Polarization: -39.95 SS G_CDS: -2.03 Total: -41.98 kcal Atomic # 14 Polarization: 40.54 SS G_CDS: 1.69 Total: 42.23 kcal Atomic # 17 Polarization: -3.39 SS G_CDS: -0.07 Total: -3.46 kcal Total: -57.47 2.67 -54.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396039944.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.375 kcal (2) G-P(sol) polarization free energy of solvation -57.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds