Wall clock time and date at job start Mon Mar 30 2020 06:40:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20759 * 120.00227 * 2 1 4 4 C 1.50695 * 119.99512 * 180.02562 * 2 1 3 5 5 H 1.09004 * 109.47087 * 34.99957 * 4 2 1 6 6 Cl 1.80301 * 109.47111 * 154.99872 * 4 2 1 7 7 C 1.50704 * 109.47359 * 274.99880 * 4 2 1 8 8 C 1.40735 * 120.12587 * 285.45375 * 7 4 2 9 9 C 1.41398 * 120.24453 * 359.97438 * 8 7 4 10 10 H 1.08001 * 119.99775 * 29.56574 * 9 8 7 11 11 C 1.39939 * 119.99925 * 209.55545 * 9 8 7 12 12 N 1.30821 * 120.00174 * 11.93147 * 11 9 8 13 13 Si 1.86800 * 119.99960 * 191.92629 * 11 9 8 14 14 H 1.48507 * 109.47206 * 0.02562 * 13 11 9 15 15 H 1.48505 * 109.47137 * 120.00520 * 13 11 9 16 16 H 1.48498 * 109.47358 * 240.00151 * 13 11 9 17 17 C 1.40695 * 119.50852 * 180.29492 * 8 7 4 18 18 C 1.37638 * 119.74718 * 359.43037 * 17 8 7 19 19 C 1.38609 * 120.24520 * 0.24980 * 18 17 8 20 20 C 1.37600 * 120.12718 * 105.12811 * 7 4 2 21 21 C 1.50697 * 119.87450 * 0.02562 * 20 7 4 22 22 O 1.42901 * 109.46629 * 179.97438 * 21 20 7 23 23 H 1.09002 * 109.47364 * 240.00423 * 1 2 3 24 24 H 1.09002 * 109.46872 * 359.97438 * 1 2 3 25 25 H 1.08990 * 109.47393 * 119.99978 * 1 2 3 26 26 H 0.97008 * 120.00304 * 179.97438 * 12 11 9 27 27 H 1.08001 * 120.12470 * 179.70004 * 17 8 7 28 28 H 1.08002 * 119.87639 * 180.27729 * 18 17 8 29 29 H 1.08007 * 119.74816 * 180.02562 * 19 18 17 30 30 H 1.08992 * 109.47509 * 299.97274 * 21 20 7 31 31 H 1.08998 * 109.47546 * 59.97853 * 21 20 7 32 32 H 0.96705 * 113.99962 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1109 1.0458 0.0000 4 6 2.2604 -1.3051 -0.0006 5 1 1.7130 -2.0404 -0.5904 6 17 3.8952 -1.0551 -0.7189 7 6 2.4044 -1.8028 1.4146 8 6 3.3231 -1.1917 2.2883 9 6 4.1162 -0.1086 1.8440 10 1 3.7435 0.5549 1.0777 11 6 5.3839 0.1035 2.3974 12 7 5.9331 -0.8176 3.1466 13 14 6.2920 1.7020 2.0662 14 1 5.4608 2.5725 1.1962 15 1 6.5571 2.3962 3.3519 16 1 7.5798 1.4083 1.3876 17 6 3.4513 -1.6708 3.6049 18 6 2.6705 -2.7223 4.0281 19 6 1.7642 -3.3121 3.1610 20 6 1.6333 -2.8520 1.8596 21 6 0.6439 -3.5041 0.9285 22 8 -0.0309 -4.5605 1.6147 23 1 -0.3634 -0.5138 0.8900 24 1 -0.3633 1.0277 0.0005 25 1 -0.3633 -0.5138 -0.8899 26 1 6.8120 -0.6707 3.5299 27 1 4.1567 -1.2124 4.2822 28 1 2.7640 -3.0888 5.0397 29 1 1.1551 -4.1365 3.5017 30 1 -0.0838 -2.7642 0.5955 31 1 1.1706 -3.9101 0.0649 32 1 -0.6846 -5.0256 1.0749 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396039959.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:01 Heat of formation + Delta-G solvation = -96.590623 kcal Electronic energy + Delta-G solvation = -18719.420072 eV Core-core repulsion = 15669.852222 eV Total energy + Delta-G solvation = -3049.567850 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.80284 -39.43015 -37.44899 -36.47355 -35.41708 -33.63387 -31.83980 -31.03421 -28.30720 -26.78043 -26.28282 -22.47600 -21.80789 -20.24862 -18.83500 -18.25032 -17.49790 -16.68980 -16.54877 -16.46264 -15.89423 -15.53127 -15.17270 -15.03512 -14.58252 -13.99415 -13.60705 -13.46307 -13.21382 -13.11890 -12.96538 -12.87296 -12.63851 -12.32912 -12.15531 -11.66715 -11.59287 -11.33596 -11.13052 -10.90494 -10.64770 -10.42660 -9.11360 -9.02331 -8.56773 -6.19570 0.65197 0.99609 1.19269 1.32333 1.46389 1.47094 1.67556 2.22204 2.79145 3.20212 3.57151 3.76002 3.95403 4.14725 4.21964 4.34183 4.46532 4.64158 4.67394 4.73762 4.75127 4.99541 5.19411 5.20618 5.41932 5.53083 5.71230 6.02226 6.18492 6.22339 6.37800 6.60396 6.84750 7.01661 7.07243 7.13943 8.39880 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018510 B = 0.009585 C = 0.007380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1512.351142 B = 2920.438307 C = 3793.356233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.348 3.652 3 O -0.472 6.472 4 C 0.018 3.982 5 H 0.143 0.857 6 Cl -0.175 7.175 7 C -0.221 4.221 8 C 0.099 3.901 9 C -0.457 4.457 10 H 0.104 0.896 11 C 0.038 3.962 12 N -0.827 5.827 13 Si 0.951 3.049 14 H -0.266 1.266 15 H -0.264 1.264 16 H -0.270 1.270 17 C -0.185 4.185 18 C -0.110 4.110 19 C -0.220 4.220 20 C -0.051 4.051 21 C 0.120 3.880 22 O -0.582 6.582 23 H 0.103 0.897 24 H 0.088 0.912 25 H 0.131 0.869 26 H 0.281 0.719 27 H 0.096 0.904 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.234 -3.044 -6.727 13.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.224 3.776 3 O -0.346 6.346 4 C -0.026 4.026 5 H 0.161 0.839 6 Cl -0.148 7.148 7 C -0.223 4.223 8 C 0.096 3.904 9 C -0.486 4.486 10 H 0.121 0.879 11 C -0.175 4.175 12 N -0.454 5.454 13 Si 0.774 3.226 14 H -0.190 1.190 15 H -0.188 1.188 16 H -0.195 1.195 17 C -0.204 4.204 18 C -0.128 4.128 19 C -0.239 4.239 20 C -0.051 4.051 21 C 0.043 3.957 22 O -0.391 6.391 23 H 0.121 0.879 24 H 0.107 0.893 25 H 0.149 0.851 26 H 0.092 0.908 27 H 0.114 0.886 28 H 0.122 0.878 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.085 0.915 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -10.182 -2.310 -6.186 12.136 hybrid contribution 0.916 0.376 -0.074 0.993 sum -9.266 -1.934 -6.260 11.349 Atomic orbital electron populations 1.22313 0.89500 1.06183 1.06596 1.25300 0.93991 0.88842 0.69481 1.90377 1.72678 1.35594 1.35980 1.23291 0.84712 0.99174 0.95394 0.83936 1.98701 1.33940 1.97694 1.84442 1.18937 1.07966 1.02541 0.92841 1.17676 0.90608 0.91279 0.90816 1.20401 0.99350 1.10263 1.18602 0.87862 1.26468 0.98760 0.99273 0.93038 1.69881 1.15654 1.33300 1.26598 0.85597 0.78398 0.79504 0.79090 1.18986 1.18842 1.19467 1.21326 1.01918 1.00532 0.96670 1.21023 0.96453 0.96527 0.98819 1.20413 1.04142 1.04628 0.94733 1.19372 0.96377 0.94302 0.95047 1.20991 0.93117 0.89352 0.92233 1.86489 1.58560 1.50165 1.43866 0.87861 0.89299 0.85073 0.90826 0.88589 0.87829 0.86713 0.89863 0.91488 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 10.00 71.24 0.71 -3.38 16 2 C 0.35 12.02 6.12 29.10 0.18 12.19 16 3 O -0.47 -20.52 14.64 -1.45 -0.02 -20.54 16 4 C 0.02 0.66 2.89 29.10 0.08 0.74 16 5 H 0.14 3.81 6.19 -2.38 -0.01 3.80 16 6 Cl -0.17 -7.49 24.68 -2.72 -0.07 -7.56 16 7 C -0.22 -9.53 4.89 -19.40 -0.09 -9.63 16 8 C 0.10 5.16 5.42 -21.29 -0.12 5.05 16 9 C -0.46 -24.62 6.40 23.46 0.15 -24.47 16 10 H 0.10 5.62 3.78 -2.91 -0.01 5.61 16 11 C 0.04 2.03 5.23 85.26 0.45 2.48 16 12 N -0.83 -44.97 10.94 21.82 0.24 -44.73 16 13 Si 0.95 42.40 29.58 68.60 2.03 44.43 16 14 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 15 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 16 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 17 C -0.18 -9.75 8.66 22.73 0.20 -9.56 16 18 C -0.11 -5.12 10.02 22.22 0.22 -4.90 16 19 C -0.22 -9.34 9.39 22.46 0.21 -9.13 16 20 C -0.05 -1.96 5.87 -19.92 -0.12 -2.08 16 21 C 0.12 3.12 5.94 71.24 0.42 3.55 16 22 O -0.58 -14.41 12.12 -148.98 -1.81 -16.22 16 23 H 0.10 2.13 7.75 -2.39 -0.02 2.11 16 24 H 0.09 1.86 8.12 -2.39 -0.02 1.84 16 25 H 0.13 1.70 8.14 -2.39 -0.02 1.68 16 26 H 0.28 14.08 8.30 -92.70 -0.77 13.31 16 27 H 0.10 5.41 6.31 -2.91 -0.02 5.39 16 28 H 0.10 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.11 4.54 6.98 -2.91 -0.02 4.52 16 30 H 0.08 1.60 7.45 -2.39 -0.02 1.58 16 31 H 0.07 1.55 7.58 -2.39 -0.02 1.53 16 32 H 0.40 4.93 9.12 -74.05 -0.68 4.25 16 Total: -1.00 -69.79 281.87 3.16 -66.63 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: 0.50 Total: 17.13 kcal Atomic # 6 Polarization: -41.43 SS G_CDS: 2.30 Total: -39.13 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.24 Total: -44.73 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -1.83 Total: -36.76 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 17 Polarization: -7.49 SS G_CDS: -0.07 Total: -7.56 kcal Total: -69.79 3.16 -66.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396039959.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.965 kcal (2) G-P(sol) polarization free energy of solvation -69.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds