Wall clock time and date at job start Mon Mar 30 2020 06:40:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.20753 * 119.99831 * 2 1 4 4 C 1.50703 * 119.99969 * 180.02562 * 2 1 3 5 5 H 1.08998 * 109.46684 * 154.99466 * 4 2 1 6 6 Cl 1.80299 * 109.47083 * 34.99866 * 4 2 1 7 7 C 1.50692 * 109.47055 * 274.99497 * 4 2 1 8 8 C 1.37642 * 119.87709 * 65.00342 * 7 4 2 9 9 C 1.40688 * 119.74904 * 179.97438 * 8 7 4 10 10 C 1.41398 * 120.24835 * 179.97438 * 9 8 7 11 11 H 1.08003 * 119.99731 * 330.24010 * 10 9 8 12 12 C 1.39945 * 120.00081 * 150.22924 * 10 9 8 13 13 N 1.30826 * 119.99924 * 161.71406 * 12 10 9 14 14 Si 1.86795 * 120.00173 * 341.72103 * 12 10 9 15 15 H 1.48508 * 109.47314 * 95.40693 * 14 12 10 16 16 H 1.48502 * 109.47098 * 215.40691 * 14 12 10 17 17 H 1.48497 * 109.47410 * 335.40592 * 14 12 10 18 18 C 1.40735 * 119.51232 * 0.02562 * 9 8 7 19 19 C 1.37604 * 119.74143 * 0.02562 * 18 9 8 20 20 C 1.50695 * 119.87292 * 180.02562 * 19 18 9 21 21 O 1.42901 * 109.47293 * 89.99433 * 20 19 18 22 22 C 1.38615 * 119.87829 * 244.72863 * 7 4 2 23 23 H 1.08999 * 109.46978 * 269.99258 * 1 2 3 24 24 H 1.09001 * 109.46889 * 149.99786 * 1 2 3 25 25 H 1.08989 * 109.47421 * 29.99848 * 1 2 3 26 26 H 1.08006 * 120.12537 * 0.02562 * 8 7 4 27 27 H 0.96993 * 120.00316 * 180.02562 * 13 12 10 28 28 H 1.08001 * 120.12953 * 179.97438 * 18 9 8 29 29 H 1.08997 * 109.47261 * 210.00007 * 20 19 18 30 30 H 1.09008 * 109.47136 * 329.99943 * 20 19 18 31 31 H 0.96694 * 114.00323 * 179.97438 * 21 20 19 32 32 H 1.08001 * 119.74539 * 359.97438 * 22 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2606 -1.3051 -0.0006 5 1 3.2488 -1.1538 -0.4349 6 17 1.3551 -2.5214 -0.9761 7 6 2.4046 -1.8026 1.4145 8 6 1.2865 -2.1633 2.1316 9 6 1.4241 -2.6279 3.4524 10 6 0.2826 -3.0008 4.1989 11 1 -0.6669 -2.5225 4.0087 12 6 0.3830 -3.9897 5.1841 13 7 -0.5405 -4.0917 6.1051 14 14 1.8359 -5.1638 5.1842 15 1 2.8847 -4.6535 6.1034 16 1 1.3886 -6.5047 5.6393 17 1 2.3894 -5.2666 3.8101 18 6 2.7062 -2.7178 4.0257 19 6 3.8100 -2.3508 3.2905 20 6 5.1843 -2.4464 3.9012 21 8 5.7340 -3.7388 3.6372 22 6 3.6630 -1.9007 1.9873 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3633 -0.8900 -0.5139 25 1 -0.3634 0.8899 -0.5137 26 1 0.3072 -2.0907 1.6818 27 1 -0.4707 -4.7768 6.7881 28 1 2.8234 -3.0728 5.0390 29 1 5.8287 -1.6819 3.4672 30 1 5.1147 -2.2943 4.9783 31 1 6.6198 -3.8714 4.0016 32 1 4.5353 -1.6201 1.4156 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396041270.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:13 Heat of formation + Delta-G solvation = -106.961206 kcal Electronic energy + Delta-G solvation = -18064.386898 eV Core-core repulsion = 15014.369346 eV Total energy + Delta-G solvation = -3050.017552 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.96109 -39.85302 -37.65767 -37.12050 -35.66289 -33.76766 -32.70686 -31.14492 -28.40290 -27.08270 -26.74760 -22.91035 -21.77703 -20.59870 -19.13079 -18.35938 -17.68443 -17.16211 -17.02372 -16.53759 -16.47705 -15.94881 -15.34513 -14.99774 -14.57532 -14.50154 -14.01146 -13.89182 -13.56445 -13.30104 -13.22436 -12.88317 -12.75162 -12.52543 -12.30709 -12.05010 -11.81837 -11.54516 -11.52232 -11.05838 -10.95053 -10.75188 -9.55583 -9.47050 -8.92951 -6.52680 0.18783 0.62942 0.81754 1.21682 1.28062 1.34865 1.48234 2.09125 2.44593 2.88408 3.32832 3.53101 3.66854 3.80474 4.13297 4.18509 4.28626 4.43280 4.54630 4.56730 4.57414 4.63615 4.78908 5.01878 5.08212 5.21359 5.47738 5.66718 5.76356 5.89663 6.10621 6.18911 6.31293 6.64784 6.79108 6.95055 8.14895 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.017028 B = 0.007711 C = 0.006278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.944932 B = 3630.349798 C = 4458.831144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.377 3.623 3 O -0.474 6.474 4 C 0.002 3.998 5 H 0.139 0.861 6 Cl -0.146 7.146 7 C -0.074 4.074 8 C -0.178 4.178 9 C 0.068 3.932 10 C -0.477 4.477 11 H 0.067 0.933 12 C 0.055 3.945 13 N -0.843 5.843 14 Si 0.956 3.044 15 H -0.263 1.263 16 H -0.278 1.278 17 H -0.260 1.260 18 C -0.220 4.220 19 C -0.069 4.069 20 C 0.120 3.880 21 O -0.587 6.587 22 C -0.189 4.189 23 H 0.103 0.897 24 H 0.104 0.896 25 H 0.107 0.893 26 H 0.119 0.881 27 H 0.294 0.706 28 H 0.096 0.904 29 H 0.078 0.922 30 H 0.054 0.946 31 H 0.396 0.604 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.478 2.870 -8.085 11.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.254 3.746 3 O -0.349 6.349 4 C -0.042 4.042 5 H 0.157 0.843 6 Cl -0.119 7.119 7 C -0.075 4.075 8 C -0.198 4.198 9 C 0.066 3.934 10 C -0.506 4.506 11 H 0.085 0.915 12 C -0.160 4.160 13 N -0.469 5.469 14 Si 0.781 3.219 15 H -0.188 1.188 16 H -0.204 1.204 17 H -0.185 1.185 18 C -0.239 4.239 19 C -0.069 4.069 20 C 0.043 3.957 21 O -0.396 6.396 22 C -0.208 4.208 23 H 0.121 0.879 24 H 0.123 0.877 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.104 0.896 28 H 0.113 0.887 29 H 0.096 0.904 30 H 0.073 0.927 31 H 0.246 0.754 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.985 3.155 -8.236 11.251 hybrid contribution 0.525 -0.690 0.748 1.145 sum 7.510 2.466 -7.488 10.888 Atomic orbital electron populations 1.22415 0.91343 1.06832 1.05937 1.24780 0.93707 0.87945 0.68158 1.90412 1.72817 1.34443 1.37249 1.23573 0.99477 0.88944 0.92235 0.84329 1.98720 1.78332 1.61222 1.73592 1.19071 0.94394 1.01590 0.92436 1.21089 0.97650 1.07421 0.93596 1.17822 0.92340 0.91281 0.91950 1.19427 0.96462 1.19572 1.15136 0.91467 1.26629 0.98706 0.98555 0.92131 1.69703 1.35207 1.31154 1.10840 0.85626 0.78429 0.77396 0.80467 1.18842 1.20422 1.18463 1.21132 0.93405 1.09715 0.99652 1.19555 0.94264 0.98543 0.94554 1.21020 0.90865 0.85344 0.98440 1.86558 1.37704 1.34020 1.81272 1.20533 0.95942 1.09047 0.95288 0.87884 0.87701 0.87433 0.86336 0.89588 0.88651 0.90352 0.92728 0.75373 0.85365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.07 9.20 71.24 0.66 -4.42 16 2 C 0.38 11.20 6.19 29.10 0.18 11.38 16 3 O -0.47 -16.26 17.84 -1.43 -0.03 -16.29 16 4 C 0.00 0.06 3.36 29.10 0.10 0.16 16 5 H 0.14 3.68 7.87 -2.39 -0.02 3.66 16 6 Cl -0.15 -4.15 26.23 -2.72 -0.07 -4.22 16 7 C -0.07 -2.79 4.84 -19.92 -0.10 -2.88 16 8 C -0.18 -7.62 8.56 22.73 0.19 -7.42 16 9 C 0.07 3.37 5.10 -21.29 -0.11 3.26 16 10 C -0.48 -25.73 9.57 23.46 0.22 -25.50 16 11 H 0.07 3.83 8.06 -2.91 -0.02 3.80 16 12 C 0.06 2.91 5.40 85.26 0.46 3.37 16 13 N -0.84 -45.32 13.93 21.83 0.30 -45.01 16 14 Si 0.96 43.68 24.52 68.60 1.68 45.37 16 15 H -0.26 -11.48 6.71 99.48 0.67 -10.81 16 16 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 17 H -0.26 -12.63 6.87 99.48 0.68 -11.95 16 18 C -0.22 -10.25 6.82 22.73 0.16 -10.09 16 19 C -0.07 -2.78 5.50 -19.92 -0.11 -2.89 16 20 C 0.12 3.76 7.16 71.23 0.51 4.27 16 21 O -0.59 -18.07 13.64 -148.98 -2.03 -20.10 16 22 C -0.19 -7.08 9.33 22.46 0.21 -6.87 16 23 H 0.10 2.65 7.88 -2.39 -0.02 2.63 16 24 H 0.10 2.35 6.30 -2.39 -0.02 2.34 16 25 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.12 4.74 6.96 -2.91 -0.02 4.72 16 27 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 28 H 0.10 4.54 4.74 -2.91 -0.01 4.52 16 29 H 0.08 1.95 8.09 -2.39 -0.02 1.93 16 30 H 0.05 1.61 8.08 -2.38 -0.02 1.59 16 31 H 0.40 7.17 9.12 -74.06 -0.68 6.50 16 32 H 0.13 4.04 7.94 -2.91 -0.02 4.02 16 Total: -1.00 -63.19 289.35 2.65 -60.54 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 0.42 Total: 17.35 kcal Atomic # 6 Polarization: -40.01 SS G_CDS: 2.37 Total: -37.64 kcal Atomic # 7 Polarization: -45.32 SS G_CDS: 0.30 Total: -45.01 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -2.06 Total: -36.39 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.68 Total: 45.37 kcal Atomic # 17 Polarization: -4.15 SS G_CDS: -0.07 Total: -4.22 kcal Total: -63.19 2.65 -60.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396041270.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.420 kcal (2) G-P(sol) polarization free energy of solvation -63.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds