Wall clock time and date at job start Mon Mar 30 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.20768 * 120.00215 * 2 1 4 4 C 1.50702 * 120.00366 * 179.97438 * 2 1 3 5 5 H 1.09005 * 109.46714 * 34.99645 * 4 2 1 6 6 Cl 1.80299 * 109.47495 * 154.99719 * 4 2 1 7 7 C 1.50696 * 109.47032 * 275.00370 * 4 2 1 8 8 C 1.37638 * 120.13076 * 101.25073 * 7 4 2 9 9 C 1.38610 * 120.24981 * 180.02562 * 8 7 4 10 10 C 1.38657 * 120.50315 * 359.97438 * 9 8 7 11 11 C 1.37602 * 120.24588 * 0.02562 * 10 9 8 12 12 C 1.50697 * 120.12489 * 179.97438 * 11 10 9 13 13 O 1.42899 * 109.47210 * 354.41979 * 12 11 10 14 14 C 1.40699 * 120.12572 * 280.96998 * 7 4 2 15 15 C 1.41394 * 120.24459 * 0.02562 * 14 7 4 16 16 H 1.07993 * 120.00352 * 51.76462 * 15 14 7 17 17 C 1.39951 * 119.99960 * 231.77145 * 15 14 7 18 18 N 1.30820 * 120.00114 * 25.59181 * 17 15 14 19 19 Si 1.86802 * 119.99817 * 205.59303 * 17 15 14 20 20 H 1.48508 * 109.46819 * 59.99900 * 19 17 15 21 21 H 1.48503 * 109.46883 * 179.97438 * 19 17 15 22 22 H 1.48493 * 109.47447 * 299.99803 * 19 17 15 23 23 H 1.09005 * 109.47196 * 270.00000 * 1 2 3 24 24 H 1.08999 * 109.47401 * 29.99812 * 1 2 3 25 25 H 1.08997 * 109.46956 * 150.00233 * 1 2 3 26 26 H 1.08001 * 119.87534 * 359.97438 * 8 7 4 27 27 H 1.08007 * 119.75075 * 179.97438 * 9 8 7 28 28 H 1.07994 * 119.88031 * 180.02562 * 10 9 8 29 29 H 1.09004 * 109.47415 * 114.42672 * 12 11 10 30 30 H 1.09007 * 109.46627 * 234.42171 * 12 11 10 31 31 H 0.96701 * 113.99819 * 179.97438 * 13 12 11 32 32 H 0.96995 * 119.99966 * 184.88485 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0459 0.0000 4 6 2.2606 -1.3051 0.0006 5 1 1.7131 -2.0409 -0.5885 6 17 3.8952 -1.0556 -0.7180 7 6 2.4044 -1.8014 1.4162 8 6 1.5785 -2.7969 1.8866 9 6 1.7083 -3.2549 3.1884 10 6 2.6697 -2.7178 4.0309 11 6 3.5063 -1.7217 3.5819 12 6 4.5498 -1.1395 4.5001 13 8 4.3901 -1.6867 5.8105 14 6 3.3875 -1.2530 2.2603 15 6 4.2452 -0.2337 1.7863 16 1 3.8305 0.6463 1.3175 17 6 5.6316 -0.3654 1.9246 18 7 6.1708 -1.5544 2.0072 19 14 6.7122 1.1569 1.9913 20 1 6.3141 1.9962 3.1500 21 1 8.1325 0.7495 2.1405 22 1 6.5491 1.9351 0.7371 23 1 -0.3634 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5138 25 1 -0.3633 -0.8900 -0.5138 26 1 0.8259 -3.2222 1.2392 27 1 1.0556 -4.0361 3.5493 28 1 2.7623 -3.0824 5.0431 29 1 5.5429 -1.3839 4.1228 30 1 4.4334 -0.0565 4.5419 31 1 5.0301 -1.3560 6.4555 32 1 7.1220 -1.6451 2.1740 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396041452.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:22 Heat of formation + Delta-G solvation = -91.228010 kcal Electronic energy + Delta-G solvation = -18816.577000 eV Core-core repulsion = 15767.241690 eV Total energy + Delta-G solvation = -3049.335310 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.64845 -39.52034 -37.38063 -36.30401 -35.39996 -33.42844 -31.87490 -30.99719 -28.26341 -26.99035 -26.02950 -22.47149 -21.62529 -20.23052 -19.11324 -17.93527 -17.26477 -16.64871 -16.56646 -16.43039 -15.89466 -15.54668 -15.28359 -15.06289 -14.33554 -14.20006 -13.50412 -13.42060 -13.25229 -13.07348 -12.92159 -12.81435 -12.65129 -12.46351 -12.12015 -11.66195 -11.50428 -11.46001 -11.07277 -10.89600 -10.45235 -10.26307 -9.08906 -8.82339 -8.43561 -6.10218 0.69255 1.03513 1.19021 1.35569 1.42002 1.43204 1.77794 2.30728 2.84760 3.19952 3.57822 3.62575 4.06108 4.21071 4.25885 4.50144 4.56014 4.68301 4.71269 4.72913 4.93584 5.04521 5.09990 5.18897 5.35843 5.53775 5.74846 5.94506 6.03862 6.29106 6.40500 6.61532 6.79880 7.01181 7.04346 7.16035 8.53706 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014975 B = 0.011917 C = 0.007992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.369833 B = 2349.047521 C = 3502.696664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.350 3.650 3 O -0.475 6.475 4 C 0.012 3.988 5 H 0.142 0.858 6 Cl -0.161 7.161 7 C -0.197 4.197 8 C -0.078 4.078 9 C -0.218 4.218 10 C -0.089 4.089 11 C -0.166 4.166 12 C 0.138 3.862 13 O -0.587 6.587 14 C 0.121 3.879 15 C -0.476 4.476 16 H 0.077 0.923 17 C 0.074 3.926 18 N -0.818 5.818 19 Si 0.909 3.091 20 H -0.262 1.262 21 H -0.272 1.272 22 H -0.277 1.277 23 H 0.103 0.897 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.141 0.859 27 H 0.127 0.873 28 H 0.106 0.894 29 H 0.053 0.947 30 H 0.034 0.966 31 H 0.388 0.612 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.183 -1.149 -0.882 8.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.226 3.774 3 O -0.350 6.350 4 C -0.032 4.032 5 H 0.159 0.841 6 Cl -0.134 7.134 7 C -0.199 4.199 8 C -0.096 4.096 9 C -0.237 4.237 10 C -0.107 4.107 11 C -0.167 4.167 12 C 0.061 3.939 13 O -0.394 6.394 14 C 0.118 3.882 15 C -0.506 4.506 16 H 0.094 0.906 17 C -0.139 4.139 18 N -0.447 5.447 19 Si 0.733 3.267 20 H -0.187 1.187 21 H -0.197 1.197 22 H -0.203 1.203 23 H 0.122 0.878 24 H 0.114 0.886 25 H 0.136 0.864 26 H 0.159 0.841 27 H 0.145 0.855 28 H 0.124 0.876 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.236 0.764 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.984 -1.001 -1.304 8.152 hybrid contribution 1.664 0.976 0.341 1.959 sum -6.321 -0.026 -0.963 6.394 Atomic orbital electron populations 1.22225 0.89599 1.06599 1.05826 1.25308 0.93876 0.88867 0.69340 1.90392 1.72916 1.35617 1.36030 1.23299 0.85397 0.99051 0.95427 0.84075 1.98717 1.32791 1.97745 1.84143 1.19609 1.04904 1.02567 0.92776 1.20852 0.97953 0.94988 0.95844 1.20892 1.02811 1.04929 0.95087 1.20802 0.95309 0.95614 0.98977 1.20047 1.00066 1.02280 0.94349 1.20709 0.97830 0.94569 0.80769 1.86340 1.60537 1.71511 1.21041 1.17322 0.90865 0.90386 0.89595 1.19275 0.90882 1.04446 1.36040 0.90564 1.25684 0.98411 0.96830 0.92998 1.69946 1.13500 1.24417 1.36860 0.86384 0.78476 0.82318 0.79537 1.18692 1.19687 1.20272 0.87833 0.88574 0.86438 0.84126 0.85472 0.87580 0.92923 0.94795 0.76385 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.09 10.25 71.23 0.73 -3.36 16 2 C 0.35 12.20 6.23 29.10 0.18 12.38 16 3 O -0.48 -20.79 14.97 -1.47 -0.02 -20.81 16 4 C 0.01 0.46 3.09 29.10 0.09 0.55 16 5 H 0.14 3.94 7.94 -2.38 -0.02 3.92 16 6 Cl -0.16 -7.20 24.38 -2.72 -0.07 -7.27 16 7 C -0.20 -8.29 4.91 -19.41 -0.10 -8.38 16 8 C -0.08 -2.82 9.65 22.22 0.21 -2.61 16 9 C -0.22 -8.28 10.05 22.46 0.23 -8.06 16 10 C -0.09 -3.90 9.36 22.22 0.21 -3.69 16 11 C -0.17 -8.05 5.70 -19.41 -0.11 -8.16 16 12 C 0.14 6.28 5.88 71.23 0.42 6.70 16 13 O -0.59 -22.87 12.16 -148.98 -1.81 -24.68 16 14 C 0.12 5.97 5.03 -21.29 -0.11 5.86 16 15 C -0.48 -24.63 4.76 23.46 0.11 -24.52 16 16 H 0.08 4.22 5.53 -2.91 -0.02 4.21 16 17 C 0.07 3.72 3.45 85.26 0.29 4.02 16 18 N -0.82 -42.50 11.66 21.83 0.25 -42.25 16 19 Si 0.91 40.60 29.63 68.60 2.03 42.63 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 21 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 22 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 23 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 24 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.12 1.74 8.08 -2.39 -0.02 1.72 16 26 H 0.14 3.74 8.02 -2.91 -0.02 3.71 16 27 H 0.13 3.96 8.06 -2.91 -0.02 3.94 16 28 H 0.11 4.51 7.01 -2.91 -0.02 4.48 16 29 H 0.05 2.55 5.68 -2.39 -0.01 2.54 16 30 H 0.03 1.57 8.04 -2.38 -0.02 1.55 16 31 H 0.39 10.78 9.12 -74.06 -0.68 10.10 16 32 H 0.28 13.54 8.30 -92.71 -0.77 12.77 16 Total: -1.00 -65.42 284.57 3.03 -62.39 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.48 Total: 19.27 kcal Atomic # 6 Polarization: -31.44 SS G_CDS: 2.16 Total: -29.28 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: 0.25 Total: -42.25 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -1.83 Total: -45.49 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.63 kcal Atomic # 17 Polarization: -7.20 SS G_CDS: -0.07 Total: -7.27 kcal Total: -65.42 3.03 -62.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396041452.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.840 kcal (2) G-P(sol) polarization free energy of solvation -65.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds