Wall clock time and date at job start Mon Mar 30 2020 06:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47247 * 2 1 4 4 Cl 1.80304 * 109.47107 * 119.99580 * 2 1 3 5 5 C 1.50702 * 109.47679 * 239.99523 * 2 1 3 6 6 O 1.21337 * 119.99736 * 93.25755 * 5 2 1 7 7 C 1.46596 * 119.99916 * 273.26501 * 5 2 1 8 8 C 1.39698 * 120.59142 * 102.06873 * 7 5 2 9 9 C 1.38015 * 120.01963 * 179.97438 * 8 7 5 10 10 C 1.38723 * 121.30943 * 0.26133 * 9 8 7 11 11 C 1.50693 * 119.38405 * 179.71899 * 10 9 8 12 12 O 1.42902 * 109.47315 * 89.99824 * 11 10 9 13 13 C 1.37505 * 121.22796 * 359.47290 * 10 9 8 14 14 C 1.40828 * 119.85980 * 0.51525 * 13 10 9 15 15 C 1.40726 * 120.61879 * 179.72559 * 14 13 10 16 16 H 1.08004 * 120.00054 * 149.66589 * 15 14 13 17 17 C 1.40393 * 120.00125 * 329.66143 * 15 14 13 18 18 N 1.30559 * 120.00178 * 166.98393 * 17 15 14 19 19 Si 1.86802 * 119.99706 * 346.98771 * 17 15 14 20 20 H 1.48498 * 109.47474 * 88.83943 * 19 17 15 21 21 H 1.48504 * 109.47036 * 208.83896 * 19 17 15 22 22 H 1.48501 * 109.47085 * 328.83637 * 19 17 15 23 23 H 1.08999 * 109.47247 * 179.97438 * 1 2 3 24 24 H 1.08992 * 109.47246 * 300.00445 * 1 2 3 25 25 H 1.09002 * 109.46752 * 60.00376 * 1 2 3 26 26 H 1.07998 * 119.98776 * 359.95387 * 8 7 5 27 27 H 1.08003 * 119.34031 * 179.97438 * 9 8 7 28 28 H 1.08999 * 109.47269 * 209.99858 * 11 10 9 29 29 H 1.09002 * 109.47559 * 329.99962 * 11 10 9 30 30 H 0.96695 * 114.00378 * 179.97438 * 12 11 10 31 31 H 1.07994 * 120.06887 * 180.26052 * 13 10 9 32 32 H 0.97004 * 120.00126 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 17 2.1309 -0.8499 1.4722 5 6 2.0324 -0.7105 -1.2304 6 8 2.2910 -0.0780 -2.2331 7 6 2.2086 -2.1657 -1.2158 8 6 1.2666 -3.0020 -1.8197 9 6 1.4445 -4.3705 -1.7995 10 6 2.5461 -4.9452 -1.1825 11 6 2.6939 -6.4449 -1.1808 12 8 3.4242 -6.8529 -2.3393 13 6 3.5081 -4.1717 -0.5768 14 6 3.3771 -2.7695 -0.5676 15 6 4.3492 -1.9628 0.0527 16 1 4.5437 -0.9682 -0.3206 17 6 5.0661 -2.4510 1.1567 18 7 6.1309 -1.8212 1.5738 19 14 4.4964 -4.0016 2.0287 20 1 5.1164 -5.1877 1.3852 21 1 4.9020 -3.9443 3.4561 22 1 3.0178 -4.1056 1.9381 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 0.3986 -2.5775 -2.3023 27 1 0.7091 -5.0068 -2.2694 28 1 3.2307 -6.7560 -0.2846 29 1 1.7069 -6.9073 -1.1920 30 1 3.5579 -7.8084 -2.4037 31 1 4.3603 -4.6386 -0.1056 32 1 6.6265 -2.1587 2.3364 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396043183.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:42 Heat of formation + Delta-G solvation = -100.335122 kcal Electronic energy + Delta-G solvation = -18505.845867 eV Core-core repulsion = 15456.115644 eV Total energy + Delta-G solvation = -3049.730224 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.77662 -39.26537 -37.37814 -36.85873 -35.59732 -33.53334 -32.52910 -32.13186 -27.74398 -27.14186 -25.33405 -23.22385 -22.43646 -20.36003 -19.26911 -18.33260 -17.95517 -17.09215 -16.90529 -16.52112 -15.81379 -15.58343 -15.31583 -14.97401 -14.73338 -14.15875 -13.98885 -13.69973 -13.60383 -13.32608 -13.11509 -12.78882 -12.63488 -12.56606 -12.08273 -11.90285 -11.63869 -11.55218 -11.24159 -11.00709 -10.87192 -10.42518 -9.54729 -9.33237 -8.94666 -6.47714 0.38199 0.74487 0.86912 1.19072 1.33776 1.43831 1.53771 2.06761 2.52843 3.01544 3.29607 3.80321 3.83396 3.85813 4.11849 4.19568 4.35832 4.46595 4.56789 4.69626 4.71948 4.75520 4.79646 4.98638 5.12120 5.27281 5.44675 5.72153 5.73019 5.98378 6.10991 6.29187 6.36931 6.64226 6.75026 6.97602 8.11769 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015455 B = 0.010954 C = 0.007649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.313225 B = 2555.511907 C = 3659.894738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.051 4.051 3 H 0.122 0.878 4 Cl -0.147 7.147 5 C 0.442 3.558 6 O -0.493 6.493 7 C -0.282 4.282 8 C -0.044 4.044 9 C -0.223 4.223 10 C -0.047 4.047 11 C 0.117 3.883 12 O -0.585 6.585 13 C -0.246 4.246 14 C 0.116 3.884 15 C -0.430 4.430 16 H 0.053 0.947 17 C 0.067 3.933 18 N -0.830 5.830 19 Si 0.941 3.059 20 H -0.259 1.259 21 H -0.281 1.281 22 H -0.239 1.239 23 H 0.074 0.926 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.396 0.604 31 H 0.100 0.900 32 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -5.030 1.213 11.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.095 4.095 3 H 0.140 0.860 4 Cl -0.121 7.121 5 C 0.320 3.680 6 O -0.369 6.369 7 C -0.284 4.284 8 C -0.062 4.062 9 C -0.242 4.242 10 C -0.048 4.048 11 C 0.040 3.960 12 O -0.394 6.394 13 C -0.265 4.265 14 C 0.112 3.888 15 C -0.459 4.459 16 H 0.071 0.929 17 C -0.151 4.151 18 N -0.455 5.455 19 Si 0.765 3.235 20 H -0.185 1.185 21 H -0.208 1.208 22 H -0.162 1.162 23 H 0.093 0.907 24 H 0.119 0.881 25 H 0.106 0.894 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.068 0.932 29 H 0.099 0.901 30 H 0.245 0.755 31 H 0.117 0.883 32 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.161 -4.030 0.863 10.965 hybrid contribution 0.629 -0.784 0.673 1.209 sum -9.533 -4.814 1.536 10.789 Atomic orbital electron populations 1.22013 0.87718 1.04772 1.05255 1.24644 1.00652 0.98569 0.85685 0.86029 1.98764 1.89869 1.81216 1.42250 1.22496 0.69252 0.89378 0.86830 1.90486 1.40110 1.70041 1.36307 1.21045 0.99560 0.93072 1.14772 1.20885 0.96746 0.93435 0.95139 1.20435 1.00810 0.94281 1.08654 1.19643 0.94209 0.94830 0.96070 1.21097 0.96376 0.90750 0.87762 1.86570 1.77871 1.29937 1.44998 1.20997 1.01137 0.93688 1.10689 1.18507 0.89510 0.91588 0.89161 1.19121 1.14474 1.00794 1.11468 0.92901 1.26595 0.92108 0.99622 0.96738 1.69545 1.13136 1.39749 1.23024 0.85885 0.82192 0.78865 0.76540 1.18513 1.20819 1.16180 0.90652 0.88133 0.89350 0.85447 0.85157 0.93216 0.90130 0.75450 0.88287 0.89350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.30 71.98 0.67 -2.80 16 2 C -0.05 -1.76 3.75 29.85 0.11 -1.65 16 3 H 0.12 3.93 8.14 -2.39 -0.02 3.91 16 4 Cl -0.15 -5.86 24.47 -2.72 -0.07 -5.92 16 5 C 0.44 18.87 4.85 27.87 0.14 19.01 16 6 O -0.49 -23.26 17.86 -3.21 -0.06 -23.32 16 7 C -0.28 -12.76 5.10 -18.55 -0.09 -12.86 16 8 C -0.04 -1.73 9.80 22.57 0.22 -1.51 16 9 C -0.22 -8.42 9.61 22.33 0.21 -8.21 16 10 C -0.05 -1.92 5.50 -19.92 -0.11 -2.03 16 11 C 0.12 3.68 7.13 71.23 0.51 4.19 16 12 O -0.59 -18.12 13.64 -148.98 -2.03 -20.15 16 13 C -0.25 -11.60 6.76 22.73 0.15 -11.45 16 14 C 0.12 5.78 4.66 -19.85 -0.09 5.68 16 15 C -0.43 -23.11 6.54 23.40 0.15 -22.96 16 16 H 0.05 3.15 7.67 -2.91 -0.02 3.13 16 17 C 0.07 3.47 5.40 85.41 0.46 3.93 16 18 N -0.83 -44.02 13.91 21.90 0.30 -43.71 16 19 Si 0.94 41.47 24.44 68.60 1.68 43.15 16 20 H -0.26 -10.95 6.47 99.48 0.64 -10.31 16 21 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 22 H -0.24 -10.49 6.88 99.48 0.68 -9.81 16 23 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 24 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.13 4.18 8.06 -2.91 -0.02 4.16 16 27 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 28 H 0.05 1.49 8.07 -2.39 -0.02 1.47 16 29 H 0.08 1.97 8.07 -2.39 -0.02 1.96 16 30 H 0.40 7.21 9.12 -74.06 -0.68 6.54 16 31 H 0.10 4.74 4.27 -2.91 -0.01 4.72 16 32 H 0.30 14.19 8.29 -92.70 -0.77 13.42 16 Total: -1.00 -65.31 287.36 2.55 -62.76 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.39 Total: 17.86 kcal Atomic # 6 Polarization: -32.99 SS G_CDS: 2.33 Total: -30.66 kcal Atomic # 7 Polarization: -44.02 SS G_CDS: 0.30 Total: -43.71 kcal Atomic # 8 Polarization: -41.38 SS G_CDS: -2.09 Total: -43.47 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 1.68 Total: 43.15 kcal Atomic # 17 Polarization: -5.86 SS G_CDS: -0.07 Total: -5.92 kcal Total: -65.31 2.55 -62.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396043183.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.579 kcal (2) G-P(sol) polarization free energy of solvation -65.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds