Wall clock time and date at job start Mon Mar 30 2020 06:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47373 * 2 1 4 4 Cl 1.80305 * 109.47136 * 240.00000 * 2 1 3 5 5 C 1.50702 * 109.47622 * 119.99984 * 2 1 3 6 6 O 1.21342 * 119.99635 * 94.99754 * 5 2 1 7 7 C 1.46598 * 120.00087 * 275.00105 * 5 2 1 8 8 C 1.39698 * 120.58575 * 5.47395 * 7 5 2 9 9 C 1.38015 * 120.01223 * 180.24769 * 8 7 5 10 10 C 1.38716 * 121.31292 * 359.49008 * 9 8 7 11 11 C 1.50699 * 119.39015 * 180.27923 * 10 9 8 12 12 O 1.42900 * 109.47324 * 89.99753 * 11 10 9 13 13 C 1.37506 * 121.22770 * 0.25646 * 10 9 8 14 14 C 1.40825 * 119.86269 * 0.02562 * 13 10 9 15 15 C 1.40721 * 120.62168 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00299 * 212.33668 * 15 14 13 17 17 C 1.40401 * 120.00208 * 32.33831 * 15 14 13 18 18 N 1.30558 * 119.99598 * 9.17618 * 17 15 14 19 19 Si 1.86797 * 120.00076 * 189.17857 * 17 15 14 20 20 H 1.48495 * 109.47208 * 59.99731 * 19 17 15 21 21 H 1.48501 * 109.47148 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47157 * 299.99692 * 19 17 15 23 23 H 1.08994 * 109.46804 * 299.99601 * 1 2 3 24 24 H 1.08998 * 109.47133 * 60.00010 * 1 2 3 25 25 H 1.09002 * 109.46639 * 179.97438 * 1 2 3 26 26 H 1.07998 * 119.99281 * 359.97438 * 8 7 5 27 27 H 1.08005 * 119.34009 * 179.77334 * 9 8 7 28 28 H 1.08993 * 109.47538 * 210.00040 * 11 10 9 29 29 H 1.09003 * 109.46914 * 330.00102 * 11 10 9 30 30 H 0.96693 * 114.00268 * 180.02562 * 12 11 10 31 31 H 1.08000 * 120.06998 * 180.02562 * 13 10 9 32 32 H 0.96999 * 119.99575 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 17 2.1310 -0.8500 -1.4722 5 6 2.0325 -0.7104 1.2304 6 8 2.3210 -1.8877 1.1759 7 6 2.1725 0.0209 2.4932 8 6 1.7378 1.3442 2.6003 9 6 1.8801 2.0232 3.7934 10 6 2.4413 1.4149 4.9066 11 6 2.5700 2.1949 6.1896 12 8 1.3911 2.0149 6.9768 13 6 2.8820 0.1131 4.8614 14 6 2.7667 -0.6251 3.6677 15 6 3.2130 -1.9582 3.6035 16 1 3.6136 -2.3496 2.6801 17 6 3.1375 -2.7794 4.7398 18 7 2.4937 -2.3700 5.7993 19 14 3.9580 -4.4574 4.7356 20 1 5.4162 -4.2949 4.5068 21 1 3.7339 -5.1213 6.0449 22 1 3.3767 -5.2901 3.6521 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.2944 1.8374 1.7480 27 1 1.5436 3.0471 3.8630 28 1 3.4366 1.8384 6.7463 29 1 2.6957 3.2531 5.9603 30 1 1.4042 2.4900 7.8189 31 1 3.3157 -0.3422 5.7395 32 1 2.4419 -2.9372 6.5844 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396043184.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:53 Heat of formation + Delta-G solvation = -86.483437 kcal Electronic energy + Delta-G solvation = -18067.316251 eV Core-core repulsion = 15018.186682 eV Total energy + Delta-G solvation = -3049.129569 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.72531 -37.31592 -35.78348 -35.41282 -33.97648 -32.30729 -30.45424 -29.68949 -26.04776 -25.52710 -23.68075 -21.28360 -20.69813 -18.49909 -17.41078 -16.92495 -15.85652 -15.45025 -14.98010 -14.30671 -14.16289 -14.11650 -13.76284 -12.94981 -12.88945 -12.45908 -12.22770 -11.97838 -11.83004 -11.61453 -11.34497 -11.22061 -11.06071 -10.66957 -10.61131 -10.34459 -10.12256 -10.02437 -9.79649 -9.51035 -9.41117 -8.32169 -7.66480 -7.43619 -6.99578 -4.58089 1.89001 2.54706 2.74147 2.99796 3.05020 3.15166 3.59461 3.82555 4.40581 4.76293 5.02859 5.24109 5.31041 5.51827 5.66076 5.74779 5.80149 5.90389 5.93530 6.10087 6.28136 6.30273 6.66255 6.84801 6.97558 7.01540 7.34246 7.52854 7.78681 7.84808 8.00045 8.10296 8.41433 8.58582 8.69557 8.83333 9.91450 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.013177 B = 0.008573 C = 0.005480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.357040 B = 3265.132359 C = 5108.310487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.044 4.044 3 H 0.113 0.887 4 Cl -0.176 7.176 5 C 0.384 3.616 6 O -0.452 6.452 7 C -0.295 4.295 8 C -0.047 4.047 9 C -0.232 4.232 10 C -0.066 4.066 11 C 0.122 3.878 12 O -0.563 6.563 13 C -0.129 4.129 14 C 0.142 3.858 15 C -0.401 4.401 16 H 0.107 0.893 17 C 0.067 3.933 18 N -0.770 5.770 19 Si 0.920 3.080 20 H -0.260 1.260 21 H -0.277 1.277 22 H -0.258 1.258 23 H 0.080 0.920 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.091 0.909 28 H 0.043 0.957 29 H 0.040 0.960 30 H 0.365 0.635 31 H 0.121 0.879 32 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.668 5.945 -1.708 6.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 H 0.131 0.869 4 Cl -0.150 7.150 5 C 0.266 3.734 6 O -0.330 6.330 7 C -0.298 4.298 8 C -0.065 4.065 9 C -0.251 4.251 10 C -0.066 4.066 11 C 0.045 3.955 12 O -0.367 6.367 13 C -0.148 4.148 14 C 0.138 3.862 15 C -0.427 4.427 16 H 0.125 0.875 17 C -0.155 4.155 18 N -0.394 5.394 19 Si 0.743 3.257 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.182 1.182 23 H 0.099 0.901 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.109 0.891 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.210 0.790 31 H 0.139 0.861 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.720 4.812 -2.134 5.313 hybrid contribution 0.336 -0.115 0.509 0.621 sum -0.384 4.697 -1.625 4.985 Atomic orbital electron populations 1.21983 0.91467 1.03884 1.03176 1.24744 0.98118 0.99336 0.86632 0.86932 1.98691 1.90282 1.82184 1.43845 1.21642 0.76153 0.88332 0.87305 1.90485 1.40296 1.16764 1.85474 1.20698 1.16731 0.96246 0.96093 1.20760 0.96434 0.93284 0.96063 1.20019 1.11854 0.99306 0.93936 1.19263 0.99892 0.94860 0.92628 1.21018 0.86794 0.97021 0.90630 1.86689 1.41037 1.74868 1.34074 1.21284 1.03112 0.91514 0.98870 1.18552 0.86141 0.92365 0.89121 1.20232 1.29777 0.95134 0.97587 0.87539 1.26278 0.93367 1.01678 0.94153 1.69693 1.28377 1.37803 1.03512 0.86141 0.80607 0.80357 0.78565 1.18438 1.20138 1.18238 0.90096 0.91366 0.91193 0.88578 0.89058 0.93862 0.94213 0.78967 0.86104 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.23 37.16 0.34 -1.84 16 2 C -0.04 -0.75 2.95 -27.88 -0.08 -0.84 16 3 H 0.11 1.71 7.00 -51.93 -0.36 1.35 16 4 Cl -0.18 -3.09 28.00 -51.86 -1.45 -4.55 16 5 C 0.38 8.52 6.24 -30.94 -0.19 8.32 16 6 O -0.45 -11.41 13.69 5.50 0.08 -11.34 16 7 C -0.29 -6.93 6.06 -102.60 -0.62 -7.55 16 8 C -0.05 -0.97 9.10 -39.12 -0.36 -1.33 16 9 C -0.23 -4.86 9.60 -39.49 -0.38 -5.24 16 10 C -0.07 -1.45 5.50 -104.71 -0.58 -2.03 16 11 C 0.12 2.20 7.13 36.01 0.26 2.46 16 12 O -0.56 -10.17 13.64 -35.23 -0.48 -10.65 16 13 C -0.13 -3.19 8.26 -38.87 -0.32 -3.51 16 14 C 0.14 3.70 5.67 -104.60 -0.59 3.10 16 15 C -0.40 -10.57 7.87 -37.83 -0.30 -10.87 16 16 H 0.11 2.88 5.96 -52.49 -0.31 2.57 16 17 C 0.07 1.64 5.27 -17.28 -0.09 1.55 16 18 N -0.77 -19.26 11.02 55.57 0.61 -18.65 16 19 Si 0.92 18.78 29.57 -169.99 -5.03 13.76 16 20 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.38 7.11 56.52 0.40 -4.97 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H 0.08 1.17 7.53 -51.93 -0.39 0.78 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.10 1.63 6.23 -52.49 -0.33 1.31 16 27 H 0.09 1.69 8.06 -52.48 -0.42 1.27 16 28 H 0.04 0.72 8.07 -51.93 -0.42 0.31 16 29 H 0.04 0.61 8.07 -51.93 -0.42 0.19 16 30 H 0.37 4.32 9.12 45.56 0.42 4.74 16 31 H 0.12 3.06 6.47 -52.49 -0.34 2.72 16 32 H 0.29 6.53 8.29 -40.82 -0.34 6.19 16 LS Contribution 291.23 15.07 4.39 4.39 Total: -1.00 -29.73 291.23 -7.35 -37.09 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -2.56 Total: 7.71 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -2.91 Total: -17.76 kcal Atomic # 7 Polarization: -19.26 SS G_CDS: 0.61 Total: -18.65 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.41 Total: -21.99 kcal Atomic # 14 Polarization: 18.78 SS G_CDS: -5.03 Total: 13.76 kcal Atomic # 17 Polarization: -3.09 SS G_CDS: -1.45 Total: -4.55 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.73 -7.35 -37.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396043184.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.396 kcal (2) G-P(sol) polarization free energy of solvation -29.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds