Wall clock time and date at job start Mon Mar 30 2020 06:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.46929 * 2 1 4 4 Cl 1.80300 * 109.47237 * 120.00133 * 2 1 3 5 5 C 1.50697 * 109.47014 * 240.00083 * 2 1 3 6 6 O 1.21244 * 120.00021 * 106.42494 * 5 2 1 7 7 C 1.47225 * 120.00014 * 286.42898 * 5 2 1 8 8 C 1.40180 * 120.05358 * 7.03309 * 7 5 2 9 9 C 1.38244 * 120.32874 * 180.25696 * 8 7 5 10 10 C 1.37798 * 120.45060 * 359.49575 * 9 8 7 11 11 C 1.40777 * 120.08994 * 0.25284 * 10 9 8 12 12 C 1.41448 * 120.16078 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99802 * 145.65788 * 12 11 10 14 14 C 1.39934 * 120.00136 * 325.65476 * 12 11 10 15 15 N 1.30825 * 119.99967 * 2.57582 * 14 12 11 16 16 Si 1.86799 * 119.99751 * 182.57776 * 14 12 11 17 17 H 1.48493 * 109.47497 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46951 * 120.00310 * 16 14 12 19 19 H 1.48504 * 109.47141 * 239.99690 * 16 14 12 20 20 C 1.39283 * 120.05095 * 186.78675 * 7 5 2 21 21 C 1.50693 * 120.22120 * 0.02562 * 20 7 5 22 22 O 1.42901 * 109.47008 * 277.87229 * 21 20 7 23 23 H 1.09001 * 109.47442 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47174 * 299.99892 * 1 2 3 25 25 H 1.08996 * 109.47498 * 59.99890 * 1 2 3 26 26 H 1.08003 * 119.83174 * 0.03048 * 8 7 5 27 27 H 1.08007 * 119.77752 * 179.77254 * 9 8 7 28 28 H 1.07997 * 119.95552 * 180.27902 * 10 9 8 29 29 H 0.96995 * 120.00001 * 180.02562 * 15 14 12 30 30 H 1.08993 * 109.47357 * 37.87195 * 21 20 7 31 31 H 1.08996 * 109.47359 * 157.87737 * 21 20 7 32 32 H 0.96703 * 114.00233 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 17 2.1310 -0.8500 1.4721 5 6 2.0323 -0.7104 -1.2305 6 8 2.5143 -0.0744 -2.1433 7 6 1.9377 -2.1766 -1.3241 8 6 1.2500 -2.9000 -0.3398 9 6 1.1622 -4.2774 -0.4194 10 6 1.7399 -4.9544 -1.4714 11 6 2.4304 -4.2457 -2.4728 12 6 3.0235 -4.9392 -3.5536 13 1 3.0523 -4.4875 -4.5342 14 6 3.5730 -6.2102 -3.3523 15 7 3.4936 -6.7785 -2.1766 16 14 4.4201 -7.0955 -4.7623 17 1 4.3768 -6.2446 -5.9784 18 1 5.8341 -7.3665 -4.3984 19 1 3.7234 -8.3792 -5.0306 20 6 2.5269 -2.8466 -2.3937 21 6 3.2636 -2.0758 -3.4585 22 8 2.3269 -1.5563 -4.4045 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 0.7897 -2.3790 0.4867 27 1 0.6334 -4.8262 0.3459 28 1 1.6625 -6.0301 -1.5279 29 1 3.8748 -7.6594 -2.0369 30 1 3.8100 -1.2525 -2.9987 31 1 3.9643 -2.7378 -3.9671 32 1 2.7319 -1.0472 -5.1201 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396043186.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:27 Heat of formation + Delta-G solvation = -94.276715 kcal Electronic energy + Delta-G solvation = -18446.532427 eV Core-core repulsion = 15397.064916 eV Total energy + Delta-G solvation = -3049.467511 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11299 -38.98249 -37.43294 -37.02376 -35.53444 -33.71486 -32.32946 -31.41357 -27.79854 -26.65054 -25.61656 -23.57164 -21.84883 -20.70595 -18.88835 -18.17954 -17.61372 -17.22881 -16.69067 -16.22200 -15.86063 -15.67636 -15.36744 -14.70425 -14.34122 -14.14890 -13.88624 -13.52585 -13.37412 -13.08904 -12.91836 -12.77698 -12.61384 -12.53365 -12.29472 -11.99793 -11.87914 -11.41496 -11.24376 -10.95017 -10.90596 -10.08927 -9.43934 -9.23039 -8.54422 -6.42035 -0.04634 0.88310 0.99798 1.37855 1.43620 1.51974 1.84921 2.21798 2.77401 2.88125 3.47000 3.73244 3.82008 3.99029 4.24327 4.40834 4.50404 4.63033 4.67515 4.71554 4.78450 4.95491 5.12328 5.16604 5.23567 5.35191 5.52903 5.80669 5.99022 6.06415 6.26353 6.49114 6.60809 6.91475 6.94321 7.04698 8.39487 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.026022 B = 0.006557 C = 0.005665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.736453 B = 4269.299909 C = 4941.158369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.037 4.037 3 H 0.141 0.859 4 Cl -0.156 7.156 5 C 0.395 3.605 6 O -0.463 6.463 7 C -0.152 4.152 8 C -0.157 4.157 9 C -0.127 4.127 10 C -0.140 4.140 11 C 0.072 3.928 12 C -0.490 4.490 13 H 0.070 0.930 14 C 0.031 3.969 15 N -0.840 5.840 16 Si 0.982 3.018 17 H -0.262 1.262 18 H -0.267 1.267 19 H -0.264 1.264 20 C -0.152 4.152 21 C 0.140 3.860 22 O -0.575 6.575 23 H 0.073 0.927 24 H 0.107 0.893 25 H 0.084 0.916 26 H 0.145 0.855 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.285 0.715 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.229 8.592 4.087 10.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.081 4.081 3 H 0.159 0.841 4 Cl -0.130 7.130 5 C 0.275 3.725 6 O -0.340 6.340 7 C -0.153 4.153 8 C -0.176 4.176 9 C -0.146 4.146 10 C -0.160 4.160 11 C 0.070 3.930 12 C -0.521 4.521 13 H 0.088 0.912 14 C -0.181 4.181 15 N -0.468 5.468 16 Si 0.804 3.196 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.189 1.189 20 C -0.153 4.153 21 C 0.064 3.936 22 O -0.382 6.382 23 H 0.092 0.908 24 H 0.126 0.874 25 H 0.102 0.898 26 H 0.162 0.838 27 H 0.143 0.857 28 H 0.134 0.866 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -3.287 8.353 4.240 9.927 hybrid contribution 1.013 -0.584 -0.798 1.416 sum -2.274 7.769 3.442 8.796 Atomic orbital electron populations 1.22201 0.88517 1.04968 1.05411 1.24698 1.00477 0.98946 0.84008 0.84105 1.98734 1.90059 1.81373 1.42796 1.22808 0.73836 0.88991 0.86851 1.90454 1.34568 1.69069 1.39891 1.19959 1.03828 0.93671 0.97830 1.21453 1.03162 0.93819 0.99192 1.21120 1.00545 0.94719 0.98182 1.21826 0.97811 1.00329 0.96043 1.17804 0.90490 0.90694 0.94061 1.19676 1.34795 1.01176 0.96453 0.91172 1.26651 0.95373 0.97089 0.98965 1.69780 1.37628 1.15523 1.23871 0.85141 0.78195 0.78196 0.78092 1.18628 1.19197 1.18871 1.20286 1.04488 0.93994 0.96577 1.20663 0.90176 0.94247 0.88539 1.86505 1.37357 1.73743 1.40588 0.90821 0.87433 0.89764 0.83753 0.85698 0.86580 0.90391 0.93090 0.94418 0.77118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.22 9.10 71.98 0.65 -2.57 16 2 C -0.04 -0.98 3.49 29.85 0.10 -0.87 16 3 H 0.14 3.07 8.13 -2.39 -0.02 3.05 16 4 Cl -0.16 -4.34 25.29 -2.72 -0.07 -4.41 16 5 C 0.40 14.65 6.08 28.05 0.17 14.82 16 6 O -0.46 -18.79 13.60 12.99 0.18 -18.62 16 7 C -0.15 -6.62 5.68 -20.19 -0.11 -6.73 16 8 C -0.16 -6.28 7.69 22.74 0.17 -6.11 16 9 C -0.13 -5.54 10.00 22.17 0.22 -5.32 16 10 C -0.14 -7.19 8.66 22.79 0.20 -6.99 16 11 C 0.07 3.87 5.54 -21.32 -0.12 3.75 16 12 C -0.49 -26.60 7.89 23.47 0.19 -26.41 16 13 H 0.07 3.80 7.05 -2.91 -0.02 3.78 16 14 C 0.03 1.59 5.41 85.25 0.46 2.05 16 15 N -0.84 -43.53 10.63 21.82 0.23 -43.30 16 16 Si 0.98 38.98 29.56 68.60 2.03 41.01 16 17 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 18 H -0.27 -10.21 7.11 99.48 0.71 -9.50 16 19 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 20 C -0.15 -7.60 5.61 -19.07 -0.11 -7.71 16 21 C 0.14 6.44 5.74 71.23 0.41 6.85 16 22 O -0.58 -24.77 12.97 -133.07 -1.73 -26.50 16 23 H 0.07 1.72 5.92 -2.39 -0.01 1.71 16 24 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.15 4.75 4.09 -2.91 -0.01 4.73 16 27 H 0.13 4.62 8.06 -2.91 -0.02 4.59 16 28 H 0.12 6.23 6.16 -2.91 -0.02 6.21 16 29 H 0.29 13.42 8.30 -92.71 -0.77 12.66 16 30 H 0.05 2.27 5.97 -2.39 -0.01 2.26 16 31 H 0.04 1.77 6.53 -2.39 -0.02 1.75 16 32 H 0.38 12.16 9.12 -74.06 -0.68 11.49 16 Total: -1.00 -63.39 279.87 3.38 -60.01 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: 0.50 Total: 27.05 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 2.24 Total: -35.24 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.23 Total: -43.30 kcal Atomic # 8 Polarization: -43.57 SS G_CDS: -1.55 Total: -45.12 kcal Atomic # 14 Polarization: 38.98 SS G_CDS: 2.03 Total: 41.01 kcal Atomic # 17 Polarization: -4.34 SS G_CDS: -0.07 Total: -4.41 kcal Total: -63.39 3.38 -60.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396043186.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.267 kcal (2) G-P(sol) polarization free energy of solvation -63.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds