Wall clock time and date at job start Mon Mar 30 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.47232 * 2 1 4 4 Cl 1.80302 * 109.47337 * 119.99989 * 2 1 3 5 5 C 1.50700 * 109.47427 * 240.00031 * 2 1 3 6 6 O 1.21343 * 119.99942 * 92.44777 * 5 2 1 7 7 C 1.46601 * 119.99620 * 272.45677 * 5 2 1 8 8 C 1.46653 * 120.59000 * 92.55847 * 7 5 2 9 9 C 1.40723 * 120.62262 * 359.96542 * 8 7 5 10 10 H 1.08004 * 119.99587 * 329.50799 * 9 8 7 11 11 C 1.40390 * 120.00119 * 149.50327 * 9 8 7 12 12 N 1.30567 * 119.99901 * 167.22182 * 11 9 8 13 13 Si 1.86791 * 120.00075 * 347.21743 * 11 9 8 14 14 H 1.48494 * 109.47167 * 92.60790 * 13 11 9 15 15 H 1.48499 * 109.47100 * 212.60596 * 13 11 9 16 16 H 1.48498 * 109.47264 * 332.60286 * 13 11 9 17 17 C 1.40797 * 118.75856 * 179.67840 * 8 7 5 18 18 C 1.37543 * 119.86186 * 0.63371 * 17 8 7 19 19 C 1.38680 * 121.22885 * 359.64774 * 18 17 8 20 20 C 1.38062 * 121.30517 * 359.97438 * 19 18 17 21 21 C 1.50690 * 119.98860 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.47356 * 0.02562 * 21 20 19 23 23 H 1.09003 * 109.47270 * 300.00186 * 1 2 3 24 24 H 1.08992 * 109.47194 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47270 * 59.99844 * 1 2 3 26 26 H 0.96998 * 120.00392 * 180.02562 * 12 11 9 27 27 H 1.07998 * 120.06807 * 180.30809 * 17 8 7 28 28 H 1.08000 * 119.38576 * 179.66521 * 18 17 8 29 29 H 1.07999 * 119.34806 * 180.02562 * 19 18 17 30 30 H 1.08998 * 109.47211 * 120.02115 * 21 20 19 31 31 H 1.08997 * 109.47479 * 240.02265 * 21 20 19 32 32 H 0.96702 * 113.99808 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 17 2.1310 -0.8499 1.4721 5 6 2.0324 -0.7104 -1.2304 6 8 2.2770 -0.0797 -2.2378 7 6 2.2254 -2.1635 -1.2103 8 6 1.1532 -3.0649 -1.6445 9 6 -0.0798 -2.5511 -2.0873 10 1 -0.4524 -1.6203 -1.6857 11 6 -0.8255 -3.2484 -3.0509 12 7 -2.0673 -2.9170 -3.2809 13 14 -0.0411 -4.6503 -4.0041 14 1 -0.3104 -5.9339 -3.3079 15 1 -0.6146 -4.6999 -5.3730 16 1 1.4252 -4.4314 -4.0894 17 6 1.3826 -4.4537 -1.6158 18 6 2.5911 -4.9392 -1.1734 19 6 3.6007 -4.0842 -0.7578 20 6 3.4319 -2.7141 -0.7727 21 6 4.5492 -1.8125 -0.3150 22 8 5.6694 -2.6060 0.0821 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5139 -0.8900 26 1 -2.5827 -3.3989 -3.9465 27 1 0.6094 -5.1366 -1.9356 28 1 2.7568 -6.0062 -1.1496 29 1 4.5380 -4.4984 -0.4165 30 1 4.8423 -1.1535 -1.1322 31 1 4.2101 -1.2140 0.5305 32 1 6.4275 -2.0904 0.3895 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396043924.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:21 Heat of formation + Delta-G solvation = -99.673053 kcal Electronic energy + Delta-G solvation = -18704.151285 eV Core-core repulsion = 15654.449771 eV Total energy + Delta-G solvation = -3049.701514 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95701 -39.04600 -37.55469 -37.14767 -35.58223 -33.65365 -32.75064 -31.90300 -27.88444 -26.82099 -25.72291 -23.42825 -22.26769 -20.48707 -19.06525 -18.35861 -18.01640 -17.15407 -16.90013 -16.15967 -15.92282 -15.82533 -15.50263 -15.16017 -14.73981 -14.51525 -13.93398 -13.70640 -13.56206 -13.42258 -13.10999 -12.83762 -12.62656 -12.43619 -12.11357 -11.92316 -11.74807 -11.59470 -11.51143 -11.06512 -10.90151 -10.49125 -9.44663 -9.32155 -8.96549 -6.55705 0.51637 0.62423 0.80409 1.23738 1.26345 1.36902 1.45673 2.07673 2.54110 2.93842 3.31020 3.40861 3.74948 3.79414 4.07362 4.27329 4.40423 4.42649 4.54828 4.66540 4.68788 4.74026 4.84938 4.92096 5.15156 5.28411 5.45255 5.74928 5.82745 5.95935 6.10578 6.28385 6.33570 6.61918 6.74360 6.94589 8.07919 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018200 B = 0.009742 C = 0.007378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.053849 B = 2873.388603 C = 3794.343377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.042 4.042 3 H 0.148 0.852 4 Cl -0.148 7.148 5 C 0.440 3.560 6 O -0.479 6.479 7 C -0.277 4.277 8 C 0.111 3.889 9 C -0.475 4.475 10 H 0.090 0.910 11 C 0.055 3.945 12 N -0.828 5.828 13 Si 0.955 3.045 14 H -0.253 1.253 15 H -0.281 1.281 16 H -0.259 1.259 17 C -0.261 4.261 18 C -0.066 4.066 19 C -0.221 4.221 20 C -0.016 4.016 21 C 0.110 3.890 22 O -0.573 6.573 23 H 0.106 0.894 24 H 0.065 0.935 25 H 0.072 0.928 26 H 0.297 0.703 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.294 2.967 6.734 10.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.086 4.086 3 H 0.165 0.835 4 Cl -0.122 7.122 5 C 0.317 3.683 6 O -0.354 6.354 7 C -0.280 4.280 8 C 0.108 3.892 9 C -0.503 4.503 10 H 0.108 0.892 11 C -0.163 4.163 12 N -0.453 5.453 13 Si 0.780 3.220 14 H -0.178 1.178 15 H -0.208 1.208 16 H -0.183 1.183 17 C -0.280 4.280 18 C -0.084 4.084 19 C -0.240 4.240 20 C -0.016 4.016 21 C 0.032 3.968 22 O -0.381 6.381 23 H 0.125 0.875 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.108 0.892 27 H 0.122 0.878 28 H 0.144 0.856 29 H 0.141 0.859 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 6.782 2.783 6.026 9.490 hybrid contribution 0.120 -0.173 -0.370 0.426 sum 6.902 2.610 5.656 9.298 Atomic orbital electron populations 1.22097 0.89543 1.04471 1.04523 1.24759 0.99849 0.99145 0.84876 0.83485 1.98707 1.89189 1.81854 1.42431 1.22458 0.69559 0.89015 0.87299 1.90497 1.39908 1.69933 1.35025 1.20696 0.95955 0.92784 1.18531 1.18554 0.90551 0.91122 0.88942 1.19764 1.01207 1.08780 1.20514 0.89204 1.26751 0.94062 0.98699 0.96752 1.69518 1.08418 1.38663 1.28675 0.85654 0.80328 0.78930 0.77073 1.17836 1.20787 1.18308 1.21102 0.99314 0.94581 1.13019 1.20993 0.92527 0.99565 0.95287 1.20336 1.00134 0.92400 1.11152 1.19502 0.92073 0.94788 0.95273 1.21120 0.85404 0.91496 0.98736 1.86430 1.26437 1.37813 1.87450 0.87535 0.91604 0.90931 0.89209 0.87819 0.85643 0.85855 0.93282 0.90226 0.75281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.72 8.15 71.98 0.59 -4.14 16 2 C -0.04 -1.34 3.76 29.85 0.11 -1.23 16 3 H 0.15 3.74 8.14 -2.38 -0.02 3.72 16 4 Cl -0.15 -4.54 24.48 -2.72 -0.07 -4.61 16 5 C 0.44 18.18 3.96 27.87 0.11 18.29 16 6 O -0.48 -22.05 17.86 -3.23 -0.06 -22.11 16 7 C -0.28 -12.53 4.88 -18.56 -0.09 -12.62 16 8 C 0.11 5.53 5.32 -19.85 -0.11 5.42 16 9 C -0.47 -24.87 8.81 23.40 0.21 -24.67 16 10 H 0.09 4.76 4.76 -2.91 -0.01 4.74 16 11 C 0.06 2.83 5.48 85.40 0.47 3.30 16 12 N -0.83 -42.87 13.91 21.90 0.30 -42.56 16 13 Si 0.96 42.25 24.41 68.60 1.67 43.92 16 14 H -0.25 -10.44 6.66 99.48 0.66 -9.77 16 15 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 16 H -0.26 -12.12 6.67 99.48 0.66 -11.46 16 17 C -0.26 -12.22 7.03 22.73 0.16 -12.06 16 18 C -0.07 -2.74 9.97 22.21 0.22 -2.52 16 19 C -0.22 -9.10 9.34 22.33 0.21 -8.89 16 20 C -0.02 -0.66 5.34 -19.57 -0.10 -0.77 16 21 C 0.11 3.61 6.37 71.23 0.45 4.06 16 22 O -0.57 -16.42 12.11 -148.98 -1.80 -18.23 16 23 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 24 H 0.06 2.50 6.38 -2.39 -0.02 2.48 16 25 H 0.07 2.37 8.11 -2.39 -0.02 2.35 16 26 H 0.30 13.90 8.29 -92.71 -0.77 13.13 16 27 H 0.10 4.77 4.34 -2.91 -0.01 4.75 16 28 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 29 H 0.12 4.68 6.95 -2.91 -0.02 4.66 16 30 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.08 2.39 5.37 -2.39 -0.01 2.37 16 32 H 0.40 6.68 9.12 -74.06 -0.68 6.01 16 Total: -1.00 -61.67 277.43 2.69 -58.98 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.41 Total: 20.42 kcal Atomic # 6 Polarization: -38.04 SS G_CDS: 2.23 Total: -35.82 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.30 Total: -42.56 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -1.86 Total: -40.33 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.67 Total: 43.92 kcal Atomic # 17 Polarization: -4.54 SS G_CDS: -0.07 Total: -4.61 kcal Total: -61.67 2.69 -58.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396043924.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.695 kcal (2) G-P(sol) polarization free energy of solvation -61.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds