Wall clock time and date at job start Mon Mar 30 2020 06:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35438 * 116.99986 * 2 1 4 4 C 1.38691 * 120.03060 * 0.02562 * 3 2 1 5 5 C 1.37757 * 120.38375 * 179.97438 * 4 3 2 6 6 C 1.40433 * 120.42782 * 0.02562 * 5 4 3 7 7 C 1.46955 * 119.97797 * 179.97438 * 6 5 4 8 8 O 1.21281 * 120.00269 * 187.03736 * 7 6 5 9 9 C 1.50706 * 119.99966 * 7.03071 * 7 6 5 10 10 H 1.09007 * 109.46813 * 160.57397 * 9 7 6 11 11 C 1.53002 * 109.46905 * 280.56793 * 9 7 6 12 12 Cl 1.80292 * 109.47044 * 40.57168 * 9 7 6 13 13 C 1.39342 * 120.04637 * 359.97438 * 6 5 4 14 14 C 1.40318 * 119.62083 * 0.02562 * 13 6 5 15 15 C 1.41239 * 120.21170 * 180.27592 * 14 13 6 16 16 H 1.08003 * 120.00562 * 152.45514 * 15 14 13 17 17 C 1.39919 * 119.99780 * 332.45227 * 15 14 13 18 18 N 1.30867 * 120.00192 * 345.99221 * 17 15 14 19 19 Si 1.86801 * 120.00029 * 165.98459 * 17 15 14 20 20 H 1.48503 * 109.47248 * 90.00217 * 19 17 15 21 21 H 1.48503 * 109.47282 * 210.00411 * 19 17 15 22 22 H 1.48506 * 109.47180 * 330.00078 * 19 17 15 23 23 H 1.09002 * 109.47258 * 300.00382 * 1 2 3 24 24 H 1.08999 * 109.46894 * 60.00354 * 1 2 3 25 25 H 1.09002 * 109.47209 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.81071 * 359.95707 * 4 3 2 27 27 H 1.08006 * 119.78609 * 179.97438 * 5 4 3 28 28 H 1.08999 * 109.46643 * 60.00485 * 11 9 7 29 29 H 1.09000 * 109.46625 * 179.97438 * 11 9 7 30 30 H 1.08994 * 109.47411 * 299.99878 * 11 9 7 31 31 H 1.08000 * 120.19208 * 180.02562 * 13 6 5 32 32 H 0.96995 * 120.00352 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0438 1.2068 0.0000 4 6 1.2891 2.3703 0.0005 5 6 1.9069 3.6016 0.0011 6 6 3.3082 3.6942 0.0005 7 6 3.9569 5.0128 0.0005 8 8 5.1599 5.0968 -0.1286 9 6 3.1273 6.2607 0.1609 10 1 3.7671 7.0839 0.4792 11 6 2.4714 6.6123 -1.1760 12 17 1.8499 5.9779 1.4013 13 6 4.0839 2.5367 0.0000 14 6 3.4567 1.2815 -0.0005 15 6 4.2308 0.1001 0.0048 16 1 3.8313 -0.8054 0.4371 17 6 5.5152 0.1029 -0.5502 18 7 5.8977 1.0975 -1.3098 19 14 6.6842 -1.3130 -0.2065 20 1 6.5086 -2.3625 -1.2424 21 1 8.0839 -0.8176 -0.2360 22 1 6.3895 -1.8845 1.1321 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 0.2107 2.3108 0.0003 27 1 1.3097 4.5015 0.0011 28 1 1.8317 5.7891 -1.4943 29 1 1.8710 7.5146 -1.0598 30 1 3.2437 6.7833 -1.9258 31 1 5.1617 2.6051 0.0000 32 1 6.7880 1.0993 -1.6948 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396046122.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:34:38 Heat of formation + Delta-G solvation = -82.778410 kcal Electronic energy + Delta-G solvation = -18207.488190 eV Core-core repulsion = 15158.519283 eV Total energy + Delta-G solvation = -3048.968907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.99403 -40.06435 -37.66173 -37.22830 -35.53119 -33.60172 -31.76212 -30.85307 -28.15359 -27.23183 -25.88809 -23.30324 -22.86017 -20.60467 -19.20080 -18.45176 -17.59975 -17.13469 -16.75146 -16.30099 -16.01187 -15.79445 -15.55933 -14.82254 -14.51487 -14.28501 -13.82920 -13.61600 -13.48513 -13.17755 -13.00467 -12.82726 -12.65024 -12.55270 -12.20915 -12.16996 -11.91027 -11.62879 -11.50096 -11.06604 -10.98657 -10.38509 -9.45270 -8.95470 -8.56574 -6.25705 -0.00742 0.93242 0.99533 1.36126 1.42472 1.51057 1.77306 2.22223 2.75522 2.82299 2.92138 3.58501 3.77696 3.83554 4.21615 4.38877 4.45169 4.51550 4.58682 4.72421 4.75177 4.77390 4.91066 5.08272 5.15968 5.31035 5.35761 5.73226 5.73431 5.86089 6.19735 6.38432 6.52290 6.74765 6.89842 7.13321 8.38498 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018284 B = 0.007337 C = 0.005588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.006440 B = 3815.252460 C = 5009.910101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.335 6.335 3 C 0.048 3.952 4 C -0.200 4.200 5 C -0.125 4.125 6 C -0.206 4.206 7 C 0.400 3.600 8 O -0.493 6.493 9 C -0.035 4.035 10 H 0.140 0.860 11 C -0.151 4.151 12 Cl -0.149 7.149 13 C -0.098 4.098 14 C 0.037 3.963 15 C -0.486 4.486 16 H 0.073 0.927 17 C 0.028 3.972 18 N -0.837 5.837 19 Si 0.980 3.020 20 H -0.261 1.261 21 H -0.269 1.269 22 H -0.259 1.259 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.112 0.888 26 H 0.142 0.858 27 H 0.154 0.846 28 H 0.073 0.927 29 H 0.110 0.890 30 H 0.081 0.919 31 H 0.106 0.894 32 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 7.271 1.097 11.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.249 6.249 3 C 0.002 3.998 4 C -0.219 4.219 5 C -0.144 4.144 6 C -0.207 4.207 7 C 0.281 3.719 8 O -0.372 6.372 9 C -0.079 4.079 10 H 0.158 0.842 11 C -0.208 4.208 12 Cl -0.122 7.122 13 C -0.118 4.118 14 C 0.035 3.965 15 C -0.517 4.517 16 H 0.091 0.909 17 C -0.185 4.185 18 N -0.465 5.465 19 Si 0.801 3.199 20 H -0.186 1.186 21 H -0.194 1.194 22 H -0.183 1.183 23 H 0.077 0.923 24 H 0.075 0.925 25 H 0.130 0.870 26 H 0.159 0.841 27 H 0.171 0.829 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.100 0.900 31 H 0.124 0.876 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.501 7.183 0.980 11.172 hybrid contribution 0.545 -0.693 0.106 0.888 sum -7.956 6.490 1.085 10.325 Atomic orbital electron populations 1.23199 0.77967 1.04584 1.01535 1.85904 1.22094 1.27804 1.89094 1.19758 0.92047 0.84410 1.03616 1.21044 0.99668 0.91754 1.09387 1.21442 0.92147 0.97978 1.02844 1.20110 0.95209 0.93286 1.12094 1.22849 0.88133 0.90797 0.70076 1.90509 1.18010 1.89467 1.39198 1.24650 0.91646 0.97685 0.93959 0.84181 1.22150 1.02053 1.04688 0.91900 1.98707 1.56857 1.96950 1.59729 1.21352 0.99126 0.90808 1.00547 1.17311 0.89182 0.94140 0.95898 1.19492 0.99565 0.97037 1.35575 0.90916 1.26701 0.99747 0.99781 0.92253 1.69857 1.20267 1.32415 1.23964 0.85236 0.76891 0.77893 0.79895 1.18572 1.19391 1.18309 0.92305 0.92462 0.86970 0.84067 0.82909 0.90781 0.87088 0.90023 0.87576 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.80 113.37 1.11 1.75 16 2 O -0.33 -14.81 9.78 -87.34 -0.85 -15.66 16 3 C 0.05 2.29 6.73 23.18 0.16 2.45 16 4 C -0.20 -8.03 9.00 22.26 0.20 -7.83 16 5 C -0.13 -4.89 7.72 22.69 0.18 -4.71 16 6 C -0.21 -9.40 5.69 -20.19 -0.11 -9.52 16 7 C 0.40 16.14 6.17 27.97 0.17 16.31 16 8 O -0.49 -23.32 17.09 -3.03 -0.05 -23.38 16 9 C -0.04 -0.97 3.48 29.85 0.10 -0.86 16 10 H 0.14 3.27 8.14 -2.38 -0.02 3.25 16 11 C -0.15 -3.23 9.14 71.98 0.66 -2.57 16 12 Cl -0.15 -4.04 24.62 -2.72 -0.07 -4.11 16 13 C -0.10 -5.39 8.21 23.04 0.19 -5.20 16 14 C 0.04 2.05 5.56 -21.24 -0.12 1.94 16 15 C -0.49 -27.69 8.69 23.42 0.20 -27.48 16 16 H 0.07 4.09 7.67 -2.91 -0.02 4.07 16 17 C 0.03 1.49 5.19 85.24 0.44 1.93 16 18 N -0.84 -47.13 10.93 21.82 0.24 -46.89 16 19 Si 0.98 41.23 29.58 68.60 2.03 43.25 16 20 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 21 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 H 0.06 1.54 7.65 -2.39 -0.02 1.52 16 24 H 0.06 1.52 7.65 -2.39 -0.02 1.50 16 25 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 26 H 0.14 4.51 6.26 -2.91 -0.02 4.49 16 27 H 0.15 4.84 4.08 -2.91 -0.01 4.83 16 28 H 0.07 1.71 6.63 -2.39 -0.02 1.69 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 6.43 5.81 -2.91 -0.02 6.41 16 32 H 0.28 14.72 8.30 -92.71 -0.77 13.95 16 Total: -1.00 -68.43 285.33 5.63 -62.81 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: 1.15 Total: 17.76 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.18 Total: -33.79 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: 0.24 Total: -46.89 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.91 Total: -39.04 kcal Atomic # 14 Polarization: 41.23 SS G_CDS: 2.03 Total: 43.25 kcal Atomic # 17 Polarization: -4.04 SS G_CDS: -0.07 Total: -4.11 kcal Total: -68.43 5.63 -62.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396046122.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.971 kcal (2) G-P(sol) polarization free energy of solvation -68.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds