Wall clock time and date at job start Mon Mar 30 2020 06:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35570 * 116.99852 * 2 1 4 4 C 1.38925 * 120.07039 * 0.23100 * 3 2 1 5 5 C 1.38353 * 121.22335 * 180.30519 * 4 3 2 6 6 C 1.37746 * 121.33121 * 359.72071 * 5 4 3 7 7 C 1.40680 * 120.01906 * 0.02562 * 6 5 4 8 8 C 1.40695 * 120.58595 * 179.97438 * 7 6 5 9 9 H 1.08009 * 120.00059 * 154.89858 * 8 7 6 10 10 C 1.40372 * 120.00154 * 334.90084 * 8 7 6 11 11 N 1.30573 * 120.00102 * 344.97996 * 10 8 7 12 12 Si 1.86808 * 119.99934 * 164.97795 * 10 8 7 13 13 H 1.48496 * 109.47099 * 60.00164 * 12 10 8 14 14 H 1.48505 * 109.47013 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.47135 * 300.00123 * 12 10 8 16 16 C 1.40242 * 120.07181 * 179.97438 * 3 2 1 17 17 C 1.46183 * 120.62648 * 359.97438 * 16 3 2 18 18 O 1.21391 * 119.99871 * 268.08054 * 17 16 3 19 19 C 1.50698 * 120.00328 * 88.07899 * 17 16 3 20 20 H 1.08997 * 109.47458 * 155.44765 * 19 17 16 21 21 C 1.53003 * 109.47007 * 275.44549 * 19 17 16 22 22 Cl 1.80298 * 109.47029 * 35.44688 * 19 17 16 23 23 H 1.09002 * 109.47231 * 59.99777 * 1 2 3 24 24 H 1.08999 * 109.47047 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47222 * 299.99891 * 1 2 3 26 26 H 1.07997 * 119.38945 * 0.02562 * 4 3 2 27 27 H 1.08005 * 119.33127 * 179.73982 * 5 4 3 28 28 H 1.08001 * 119.98820 * 179.97438 * 6 5 4 29 29 H 0.97004 * 119.99882 * 180.02562 * 11 10 8 30 30 H 1.09001 * 109.46949 * 179.97438 * 21 19 17 31 31 H 1.09001 * 109.46995 * 60.00327 * 21 19 17 32 32 H 1.08998 * 109.47503 * 299.99781 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0445 1.2080 0.0000 4 6 1.2893 2.3740 0.0048 5 6 1.8924 3.6191 -0.0013 6 6 3.2635 3.7508 -0.0068 7 6 4.0806 2.6056 -0.0067 8 6 5.4823 2.7263 -0.0128 9 1 6.0946 1.9298 0.3839 10 6 6.0851 3.8817 -0.5344 11 7 5.3893 4.7054 -1.2709 12 14 7.8827 4.2410 -0.1748 13 1 8.7227 3.1323 -0.6946 14 1 8.2756 5.5112 -0.8363 15 1 8.0789 4.3649 1.2920 16 6 3.4449 1.2831 0.0005 17 6 4.2560 0.0670 0.0017 18 8 4.6216 -0.4178 1.0528 19 6 4.6382 -0.5851 -1.3020 20 1 5.5474 -1.1700 -1.1630 21 6 3.5059 -1.5047 -1.7636 22 17 4.9260 0.6859 -2.5480 23 1 -0.3634 0.5139 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2114 2.3073 0.0090 27 1 1.2756 4.5057 -0.0016 28 1 3.7114 4.7336 -0.0120 29 1 5.8060 5.5036 -1.6316 30 1 3.7822 -1.9760 -2.7068 31 1 2.5967 -0.9198 -1.9028 32 1 3.3319 -2.2731 -1.0104 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396047678.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:36:47 Heat of formation + Delta-G solvation = -86.223012 kcal Electronic energy + Delta-G solvation = -18729.289872 eV Core-core repulsion = 15680.171595 eV Total energy + Delta-G solvation = -3049.118277 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.94095 -39.65327 -37.83276 -36.87687 -35.32875 -33.45160 -31.79193 -30.72297 -28.03102 -27.34239 -25.81425 -23.47196 -22.45761 -20.47763 -19.49054 -17.87185 -17.43146 -17.14748 -16.91849 -16.45611 -16.21161 -15.58044 -15.34360 -14.97883 -14.49810 -14.20177 -13.65967 -13.55044 -13.26751 -13.23534 -12.86070 -12.79013 -12.56059 -12.43101 -12.10266 -11.97936 -11.82151 -11.61300 -11.43904 -11.25814 -11.02083 -10.32289 -9.31297 -8.80745 -8.66515 -6.41619 0.78688 0.80388 1.13340 1.37026 1.46148 1.53960 1.54748 2.16718 2.63754 2.69832 3.14544 3.66083 3.85140 3.90303 4.34088 4.49662 4.50434 4.56313 4.68065 4.75494 4.78505 4.92573 5.00834 5.05394 5.17287 5.25564 5.38309 5.76802 5.89654 6.06090 6.16154 6.47464 6.51734 6.76395 6.83781 7.01223 8.22351 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.019008 B = 0.009252 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.677445 B = 3025.539737 C = 3782.264958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.340 6.340 3 C 0.179 3.821 4 C -0.332 4.332 5 C -0.058 4.058 6 C -0.226 4.226 7 C 0.160 3.840 8 C -0.455 4.455 9 H 0.062 0.938 10 C 0.052 3.948 11 N -0.789 5.789 12 Si 0.965 3.035 13 H -0.261 1.261 14 H -0.259 1.259 15 H -0.262 1.262 16 C -0.338 4.338 17 C 0.458 3.542 18 O -0.499 6.499 19 C -0.050 4.050 20 H 0.125 0.875 21 C -0.135 4.135 22 Cl -0.149 7.149 23 H 0.059 0.941 24 H 0.120 0.880 25 H 0.053 0.947 26 H 0.127 0.873 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.294 0.706 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.109 -5.673 -2.898 7.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.254 6.254 3 C 0.134 3.866 4 C -0.352 4.352 5 C -0.077 4.077 6 C -0.245 4.245 7 C 0.156 3.844 8 C -0.483 4.483 9 H 0.080 0.920 10 C -0.168 4.168 11 N -0.412 5.412 12 Si 0.786 3.214 13 H -0.186 1.186 14 H -0.182 1.182 15 H -0.186 1.186 16 C -0.341 4.341 17 C 0.337 3.663 18 O -0.376 6.376 19 C -0.095 4.095 20 H 0.143 0.857 21 C -0.192 4.192 22 Cl -0.123 7.123 23 H 0.078 0.922 24 H 0.138 0.862 25 H 0.072 0.928 26 H 0.145 0.855 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.819 -5.798 -2.607 7.416 hybrid contribution 0.541 0.671 0.042 0.863 sum -3.278 -5.127 -2.565 6.604 Atomic orbital electron populations 1.23192 0.77187 1.04782 1.01712 1.85863 1.23038 1.27545 1.88943 1.18639 0.89924 0.84246 0.93797 1.20518 0.98773 0.91698 1.24181 1.20739 0.94525 0.96492 0.95926 1.21224 0.92925 0.98311 1.12080 1.18297 0.92954 0.88177 0.84947 1.19460 0.91690 1.02496 1.34627 0.92013 1.26587 1.04376 0.94117 0.91729 1.69719 1.40080 1.10431 1.20985 0.85493 0.77022 0.79050 0.79872 1.18553 1.18235 1.18624 1.20213 0.90767 0.94052 1.29059 1.22166 0.73357 0.82017 0.88770 1.90450 1.48425 1.62705 1.36051 1.24664 1.03955 0.91786 0.89054 0.85684 1.21931 0.96088 0.97921 1.03263 1.98749 1.96957 1.58648 1.57933 0.92248 0.86209 0.92787 0.85529 0.86713 0.86983 0.89477 0.88243 0.91331 0.90028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.80 113.37 1.11 1.79 16 2 O -0.34 -12.84 8.52 -88.77 -0.76 -13.60 16 3 C 0.18 8.00 6.71 22.92 0.15 8.16 16 4 C -0.33 -14.05 9.01 22.46 0.20 -13.85 16 5 C -0.06 -2.62 9.95 22.18 0.22 -2.40 16 6 C -0.23 -11.52 8.70 22.75 0.20 -11.32 16 7 C 0.16 8.42 5.34 -19.86 -0.11 8.31 16 8 C -0.46 -23.84 7.87 23.39 0.18 -23.66 16 9 H 0.06 3.33 7.38 -2.91 -0.02 3.31 16 10 C 0.05 2.49 5.21 85.40 0.44 2.94 16 11 N -0.79 -38.50 10.84 21.90 0.24 -38.26 16 12 Si 0.96 37.31 29.59 68.60 2.03 39.34 16 13 H -0.26 -10.03 7.11 99.48 0.71 -9.32 16 14 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 15 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 16 C -0.34 -16.70 4.82 -18.51 -0.09 -16.79 16 17 C 0.46 21.20 4.18 27.75 0.12 21.32 16 18 O -0.50 -25.27 17.86 -3.37 -0.06 -25.33 16 19 C -0.05 -1.86 3.74 29.85 0.11 -1.75 16 20 H 0.13 4.16 8.14 -2.39 -0.02 4.14 16 21 C -0.14 -3.97 9.08 71.98 0.65 -3.32 16 22 Cl -0.15 -6.07 26.62 -2.72 -0.07 -6.15 16 23 H 0.06 1.45 7.66 -2.39 -0.02 1.43 16 24 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 25 H 0.05 1.37 7.64 -2.39 -0.02 1.35 16 26 H 0.13 4.46 6.23 -2.91 -0.02 4.44 16 27 H 0.11 4.44 8.06 -2.91 -0.02 4.42 16 28 H 0.11 5.87 6.11 -2.91 -0.02 5.85 16 29 H 0.29 12.92 8.29 -92.71 -0.77 12.15 16 30 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 31 H 0.07 2.20 6.91 -2.39 -0.02 2.18 16 32 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -61.48 290.03 5.72 -55.76 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 1.14 Total: 18.82 kcal Atomic # 6 Polarization: -33.77 SS G_CDS: 3.20 Total: -30.57 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.24 Total: -38.26 kcal Atomic # 8 Polarization: -38.12 SS G_CDS: -0.82 Total: -38.93 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 17 Polarization: -6.07 SS G_CDS: -0.07 Total: -6.15 kcal Total: -61.48 5.72 -55.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047678.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.467 kcal (2) G-P(sol) polarization free energy of solvation -61.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds