Wall clock time and date at job start Mon Mar 30 2020 06:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99961 * 2 1 4 4 C 1.38140 * 119.93079 * 359.97438 * 3 2 1 5 5 C 1.40611 * 119.69061 * 179.97438 * 4 3 2 6 6 C 1.41406 * 120.21070 * 179.97438 * 5 4 3 7 7 H 1.07992 * 120.00160 * 335.03137 * 6 5 4 8 8 C 1.39941 * 119.99194 * 155.03202 * 6 5 4 9 9 N 1.30818 * 120.00287 * 342.50461 * 8 6 5 10 10 Si 1.86808 * 119.99605 * 162.51092 * 8 6 5 11 11 H 1.48501 * 109.47038 * 59.99322 * 10 8 6 12 12 H 1.48494 * 109.47006 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46777 * 299.99699 * 10 8 6 14 14 C 1.40763 * 119.56926 * 0.02562 * 5 4 3 15 15 C 1.37633 * 119.85309 * 359.97438 * 14 5 4 16 16 C 1.38559 * 120.30625 * 359.74483 * 15 14 5 17 17 C 1.50700 * 119.77654 * 180.27627 * 16 15 14 18 18 C 1.50705 * 109.47055 * 265.23540 * 17 16 15 19 19 O 1.20752 * 120.00033 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99855 * 180.02562 * 18 17 16 21 21 Cl 1.80300 * 109.46871 * 180.02562 * 20 18 17 22 22 H 1.09000 * 109.46472 * 60.00285 * 1 2 3 23 23 H 1.08997 * 109.46729 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46776 * 299.99888 * 1 2 3 25 25 H 1.07997 * 120.15520 * 359.96195 * 4 3 2 26 26 H 0.97001 * 120.00398 * 180.02562 * 9 8 6 27 27 H 1.07997 * 120.07381 * 180.02562 * 14 5 4 28 28 H 1.07997 * 119.84327 * 180.02562 * 15 14 5 29 29 H 1.09002 * 109.47418 * 25.23852 * 17 16 15 30 30 H 1.09000 * 109.46975 * 145.24473 * 17 16 15 31 31 H 1.08999 * 109.46757 * 300.00329 * 20 18 17 32 32 H 1.08998 * 109.46989 * 60.00567 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3685 -0.0005 5 6 1.9358 3.6187 0.0000 6 6 1.1750 4.8106 -0.0011 7 1 0.1703 4.8096 -0.3970 8 6 1.7242 5.9915 0.5110 9 7 2.7753 5.9409 1.2881 10 14 0.9561 7.6402 0.0849 11 1 -0.4524 7.6663 0.5546 12 1 1.7190 8.7279 0.7483 13 1 0.9910 7.8369 -1.3866 14 6 3.3423 3.6759 0.0006 15 6 4.0753 2.5110 0.0011 16 6 3.4353 1.2821 0.0064 17 6 4.2497 0.0142 0.0132 18 6 4.4232 -0.4791 -1.4002 19 8 3.9362 0.1358 -2.3183 20 6 5.2044 -1.7397 -1.6678 21 17 5.2338 -2.0635 -3.4413 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2136 2.3136 -0.0016 26 1 3.1558 6.7594 1.6434 27 1 3.8450 4.6317 0.0014 28 1 5.1544 2.5551 0.0019 29 1 5.2279 0.2129 0.4513 30 1 3.7351 -0.7450 0.6023 31 1 6.2248 -1.6189 -1.3039 32 1 4.7317 -2.5762 -1.1532 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396047698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:02 Heat of formation + Delta-G solvation = -72.444150 kcal Electronic energy + Delta-G solvation = -17867.248943 eV Core-core repulsion = 14818.728163 eV Total energy + Delta-G solvation = -3048.520780 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -39.40360 -38.38483 -36.29103 -35.82337 -33.79223 -31.70293 -29.78665 -28.67542 -27.32040 -26.67770 -24.01665 -20.77885 -20.63555 -19.17169 -17.85573 -15.85696 -15.77584 -15.60613 -15.26267 -15.07606 -14.79677 -14.60009 -13.77452 -13.24878 -13.13661 -13.00954 -12.54275 -12.35252 -11.63311 -11.54781 -11.27582 -11.24908 -11.09127 -10.78178 -10.64426 -10.51536 -10.45108 -10.00145 -9.82370 -9.49857 -9.26590 -9.05364 -7.48324 -6.88429 -6.80060 -4.43027 2.14901 2.35378 2.71914 3.03377 3.05317 3.07355 3.17558 3.88750 4.19008 4.22136 4.59994 4.96527 5.09187 5.52314 5.62873 5.67478 5.75663 5.78373 5.95565 6.02078 6.25939 6.32419 6.78551 6.85894 6.99181 7.16885 7.30855 7.67184 7.89220 7.93857 7.99382 8.17241 8.33365 8.61845 8.84084 8.95050 10.12005 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.004766 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.725447 B = 5873.915461 C = 6330.071575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.335 6.335 3 C 0.159 3.841 4 C -0.308 4.308 5 C 0.141 3.859 6 C -0.460 4.460 7 H 0.077 0.923 8 C 0.078 3.922 9 N -0.788 5.788 10 Si 0.909 3.091 11 H -0.265 1.265 12 H -0.277 1.277 13 H -0.263 1.263 14 C -0.186 4.186 15 C -0.063 4.063 16 C -0.232 4.232 17 C -0.087 4.087 18 C 0.337 3.663 19 O -0.411 6.411 20 C -0.090 4.090 21 Cl -0.163 7.163 22 H 0.047 0.953 23 H 0.082 0.918 24 H 0.048 0.952 25 H 0.099 0.901 26 H 0.282 0.718 27 H 0.119 0.881 28 H 0.093 0.907 29 H 0.089 0.911 30 H 0.092 0.908 31 H 0.119 0.881 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.066 -10.238 -0.409 10.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.249 6.249 3 C 0.115 3.885 4 C -0.328 4.328 5 C 0.138 3.862 6 C -0.489 4.489 7 H 0.096 0.904 8 C -0.141 4.141 9 N -0.412 5.412 10 Si 0.733 3.267 11 H -0.190 1.190 12 H -0.202 1.202 13 H -0.187 1.187 14 C -0.205 4.205 15 C -0.082 4.082 16 C -0.234 4.234 17 C -0.124 4.124 18 C 0.208 3.792 19 O -0.280 6.280 20 C -0.154 4.154 21 Cl -0.137 7.137 22 H 0.066 0.934 23 H 0.100 0.900 24 H 0.067 0.933 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.137 0.863 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.039 -9.951 -0.900 10.444 hybrid contribution -0.499 0.827 -0.052 0.968 sum 2.540 -9.124 -0.952 9.519 Atomic orbital electron populations 1.22766 0.80194 1.01738 1.01125 1.85848 1.20034 1.29258 1.89770 1.18433 0.91210 0.82776 0.96078 1.20979 0.97645 0.92223 1.21950 1.17380 0.92037 0.91311 0.85439 1.19576 1.01072 0.92767 1.35501 0.90441 1.25923 0.94323 1.01334 0.92502 1.69819 1.19112 1.30658 1.21634 0.86355 0.79971 0.80291 0.80066 1.18973 1.20232 1.18712 1.21217 0.94054 0.96839 1.08418 1.20303 0.97124 0.91859 0.98906 1.17818 0.89357 0.92831 1.23399 1.20496 1.00821 0.97828 0.93278 1.24936 0.77379 0.84124 0.92790 1.90454 1.37163 1.53743 1.46637 1.25104 1.05070 1.01701 0.83515 1.98723 1.99269 1.96154 1.19515 0.93404 0.89965 0.93308 0.88275 0.90693 0.86345 0.88907 0.89314 0.88950 0.86303 0.86253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.81 101.05 0.99 1.60 16 2 O -0.33 -6.77 9.61 -19.43 -0.19 -6.96 16 3 C 0.16 3.67 6.65 -39.29 -0.26 3.41 16 4 C -0.31 -7.68 8.78 -38.72 -0.34 -8.02 16 5 C 0.14 3.79 5.57 -106.84 -0.59 3.20 16 6 C -0.46 -12.21 9.05 -37.74 -0.34 -12.56 16 7 H 0.08 1.98 7.90 -52.49 -0.41 1.56 16 8 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 9 N -0.79 -20.05 10.97 55.55 0.61 -19.44 16 10 Si 0.91 18.51 29.59 -169.99 -5.03 13.47 16 11 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 12 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 13 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 14 C -0.19 -4.84 8.69 -38.85 -0.34 -5.18 16 15 C -0.06 -1.47 9.64 -39.68 -0.38 -1.85 16 16 C -0.23 -5.09 4.41 -104.18 -0.46 -5.55 16 17 C -0.09 -1.42 5.47 -29.03 -0.16 -1.58 16 18 C 0.34 5.45 7.19 -29.03 -0.21 5.24 16 19 O -0.41 -8.61 15.69 6.01 0.09 -8.51 16 20 C -0.09 -1.03 7.07 36.01 0.25 -0.77 16 21 Cl -0.16 -2.26 28.37 -51.86 -1.47 -3.73 16 22 H 0.05 0.79 7.65 -51.93 -0.40 0.39 16 23 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 24 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 25 H 0.10 2.32 6.28 -52.49 -0.33 1.99 16 26 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 27 H 0.12 3.16 6.18 -52.49 -0.32 2.84 16 28 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.09 1.20 8.05 -51.93 -0.42 0.78 16 30 H 0.09 1.37 7.67 -51.93 -0.40 0.98 16 31 H 0.12 0.99 8.14 -51.93 -0.42 0.56 16 32 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 295.21 15.07 4.45 4.45 Total: -1.00 -30.50 295.21 -6.97 -37.47 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -3.51 Total: 3.45 kcal Atomic # 6 Polarization: -18.27 SS G_CDS: -1.93 Total: -20.20 kcal Atomic # 7 Polarization: -20.05 SS G_CDS: 0.61 Total: -19.44 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.09 Total: -15.47 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.47 Total: -3.73 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -30.50 -6.97 -37.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.975 kcal (2) G-P(sol) polarization free energy of solvation -30.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds