Wall clock time and date at job start Mon Mar 30 2020 06:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35901 * 116.99961 * 2 1 4 4 C 1.38140 * 119.93079 * 359.97438 * 3 2 1 5 5 C 1.40611 * 119.69061 * 179.97438 * 4 3 2 6 6 C 1.41406 * 120.21070 * 179.97438 * 5 4 3 7 7 H 1.07992 * 120.00160 * 335.03137 * 6 5 4 8 8 C 1.39941 * 119.99194 * 155.03202 * 6 5 4 9 9 N 1.30818 * 120.00287 * 342.50461 * 8 6 5 10 10 Si 1.86808 * 119.99605 * 162.51092 * 8 6 5 11 11 H 1.48501 * 109.47038 * 59.99322 * 10 8 6 12 12 H 1.48494 * 109.47006 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46777 * 299.99699 * 10 8 6 14 14 C 1.40763 * 119.56926 * 0.02562 * 5 4 3 15 15 C 1.37633 * 119.85309 * 359.97438 * 14 5 4 16 16 C 1.38559 * 120.30625 * 359.74483 * 15 14 5 17 17 C 1.50700 * 119.77654 * 180.27627 * 16 15 14 18 18 C 1.50705 * 109.47055 * 265.23540 * 17 16 15 19 19 O 1.20752 * 120.00033 * 0.02562 * 18 17 16 20 20 C 1.50706 * 119.99855 * 180.02562 * 18 17 16 21 21 Cl 1.80300 * 109.46871 * 180.02562 * 20 18 17 22 22 H 1.09000 * 109.46472 * 60.00285 * 1 2 3 23 23 H 1.08997 * 109.46729 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46776 * 299.99888 * 1 2 3 25 25 H 1.07997 * 120.15520 * 359.96195 * 4 3 2 26 26 H 0.97001 * 120.00398 * 180.02562 * 9 8 6 27 27 H 1.07997 * 120.07381 * 180.02562 * 14 5 4 28 28 H 1.07997 * 119.84327 * 180.02562 * 15 14 5 29 29 H 1.09002 * 109.47418 * 25.23852 * 17 16 15 30 30 H 1.09000 * 109.46975 * 145.24473 * 17 16 15 31 31 H 1.08999 * 109.46757 * 300.00329 * 20 18 17 32 32 H 1.08998 * 109.46989 * 60.00567 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2922 2.3685 -0.0005 5 6 1.9358 3.6187 0.0000 6 6 1.1750 4.8106 -0.0011 7 1 0.1703 4.8096 -0.3970 8 6 1.7242 5.9915 0.5110 9 7 2.7753 5.9409 1.2881 10 14 0.9561 7.6402 0.0849 11 1 -0.4524 7.6663 0.5546 12 1 1.7190 8.7279 0.7483 13 1 0.9910 7.8369 -1.3866 14 6 3.3423 3.6759 0.0006 15 6 4.0753 2.5110 0.0011 16 6 3.4353 1.2821 0.0064 17 6 4.2497 0.0142 0.0132 18 6 4.4232 -0.4791 -1.4002 19 8 3.9362 0.1358 -2.3183 20 6 5.2044 -1.7397 -1.6678 21 17 5.2338 -2.0635 -3.4413 22 1 -0.3632 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 0.2136 2.3136 -0.0016 26 1 3.1558 6.7594 1.6434 27 1 3.8450 4.6317 0.0014 28 1 5.1544 2.5551 0.0019 29 1 5.2279 0.2129 0.4513 30 1 3.7351 -0.7450 0.6023 31 1 6.2248 -1.6189 -1.3039 32 1 4.7317 -2.5762 -1.1532 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396047698.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:00 Heat of formation + Delta-G solvation = -90.454167 kcal Electronic energy + Delta-G solvation = -17868.029916 eV Core-core repulsion = 14818.728163 eV Total energy + Delta-G solvation = -3049.301753 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.94707 -39.87853 -38.03477 -36.83079 -35.58241 -33.32590 -31.17490 -30.41791 -28.84823 -28.16039 -25.70992 -22.57450 -22.34634 -20.49120 -19.66745 -17.61297 -17.22349 -17.03846 -16.66356 -16.55912 -16.27731 -16.09100 -15.33743 -14.93987 -14.52477 -14.11757 -14.08479 -13.94747 -13.36042 -13.14300 -12.90285 -12.74974 -12.63534 -12.35680 -12.13570 -11.84712 -11.73419 -11.59660 -11.40767 -11.27738 -10.96514 -10.51952 -9.34883 -8.70842 -8.65096 -6.38930 0.89729 1.13661 1.16270 1.26013 1.36126 1.47222 1.52991 2.18442 2.64196 2.68840 3.10958 3.72066 4.13762 4.19892 4.32197 4.36321 4.42330 4.44350 4.64887 4.66732 4.72246 4.87800 4.98294 5.09734 5.11403 5.27245 5.47471 5.84234 6.00123 6.11976 6.29806 6.49318 6.70956 6.74193 6.90827 7.07806 8.29798 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.027002 B = 0.004766 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.725447 B = 5873.915461 C = 6330.071575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.333 6.333 3 C 0.152 3.848 4 C -0.328 4.328 5 C 0.107 3.893 6 C -0.502 4.502 7 H 0.072 0.928 8 C 0.039 3.961 9 N -0.818 5.818 10 Si 0.981 3.019 11 H -0.259 1.259 12 H -0.263 1.263 13 H -0.264 1.264 14 C -0.217 4.217 15 C -0.067 4.067 16 C -0.229 4.229 17 C -0.090 4.090 18 C 0.342 3.658 19 O -0.470 6.470 20 C -0.079 4.079 21 Cl -0.186 7.186 22 H 0.039 0.961 23 H 0.126 0.874 24 H 0.048 0.952 25 H 0.101 0.899 26 H 0.290 0.710 27 H 0.101 0.899 28 H 0.120 0.880 29 H 0.126 0.874 30 H 0.115 0.885 31 H 0.160 0.840 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.933 -12.038 0.134 12.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.247 6.247 3 C 0.107 3.893 4 C -0.348 4.348 5 C 0.105 3.895 6 C -0.531 4.531 7 H 0.090 0.910 8 C -0.177 4.177 9 N -0.443 5.443 10 Si 0.802 3.198 11 H -0.183 1.183 12 H -0.187 1.187 13 H -0.188 1.188 14 C -0.237 4.237 15 C -0.085 4.085 16 C -0.230 4.230 17 C -0.127 4.127 18 C 0.217 3.783 19 O -0.344 6.344 20 C -0.142 4.142 21 Cl -0.160 7.160 22 H 0.058 0.942 23 H 0.144 0.856 24 H 0.067 0.933 25 H 0.119 0.881 26 H 0.101 0.899 27 H 0.119 0.881 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.133 0.867 31 H 0.177 0.823 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.913 -11.790 -0.336 12.427 hybrid contribution -0.755 1.187 -0.166 1.416 sum 3.158 -10.603 -0.501 11.075 Atomic orbital electron populations 1.23071 0.78145 1.04517 1.00762 1.85832 1.22068 1.27487 1.89335 1.18652 0.92113 0.83183 0.95339 1.21172 0.98140 0.92729 1.22799 1.17738 0.92856 0.92306 0.86615 1.19797 1.01397 0.94244 1.37685 0.91023 1.26733 0.94751 1.04485 0.91719 1.69862 1.20246 1.31977 1.22205 0.85271 0.79315 0.75682 0.79553 1.18294 1.18701 1.18820 1.21206 0.94133 0.97353 1.10985 1.20663 0.98524 0.91621 0.97724 1.18427 0.89716 0.94876 1.20022 1.20662 1.01991 0.95533 0.94520 1.25321 0.76283 0.85016 0.91715 1.90469 1.39951 1.55938 1.48006 1.25220 1.06820 0.99989 0.82133 1.98731 1.99300 1.96077 1.21890 0.94194 0.85554 0.93323 0.88086 0.89934 0.88063 0.86181 0.85626 0.86682 0.82274 0.82647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 9.81 113.37 1.11 2.05 16 2 O -0.33 -12.96 9.61 -92.43 -0.89 -13.85 16 3 C 0.15 6.99 6.65 22.46 0.15 7.14 16 4 C -0.33 -16.96 8.78 22.83 0.20 -16.75 16 5 C 0.11 6.05 5.57 -21.30 -0.12 5.93 16 6 C -0.50 -28.06 9.05 23.46 0.21 -27.84 16 7 H 0.07 3.89 7.90 -2.91 -0.02 3.86 16 8 C 0.04 2.00 5.14 85.26 0.44 2.44 16 9 N -0.82 -43.03 10.97 21.82 0.24 -42.79 16 10 Si 0.98 38.79 29.59 68.60 2.03 40.83 16 11 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 12 H -0.26 -9.66 7.11 99.48 0.71 -8.96 16 13 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 14 C -0.22 -11.77 8.69 22.74 0.20 -11.57 16 15 C -0.07 -3.11 9.64 22.20 0.21 -2.89 16 16 C -0.23 -9.76 4.41 -19.58 -0.09 -9.84 16 17 C -0.09 -2.61 5.47 29.10 0.16 -2.45 16 18 C 0.34 9.99 7.19 29.11 0.21 10.19 16 19 O -0.47 -19.18 15.69 -1.43 -0.02 -19.20 16 20 C -0.08 -1.44 7.07 71.24 0.50 -0.93 16 21 Cl -0.19 -4.72 28.37 -2.72 -0.08 -4.80 16 22 H 0.04 1.31 7.65 -2.39 -0.02 1.29 16 23 H 0.13 2.81 8.14 -2.39 -0.02 2.80 16 24 H 0.05 1.52 7.66 -2.39 -0.02 1.50 16 25 H 0.10 4.96 6.28 -2.91 -0.02 4.94 16 26 H 0.29 13.71 8.30 -92.71 -0.77 12.94 16 27 H 0.10 5.70 6.18 -2.91 -0.02 5.68 16 28 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 29 H 0.13 2.76 8.05 -2.39 -0.02 2.74 16 30 H 0.12 2.89 7.67 -2.39 -0.02 2.87 16 31 H 0.16 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.16 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -70.93 295.21 5.61 -65.32 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: 1.14 Total: 19.03 kcal Atomic # 6 Polarization: -47.73 SS G_CDS: 3.19 Total: -44.54 kcal Atomic # 7 Polarization: -43.03 SS G_CDS: 0.24 Total: -42.79 kcal Atomic # 8 Polarization: -32.14 SS G_CDS: -0.91 Total: -33.05 kcal Atomic # 14 Polarization: 38.79 SS G_CDS: 2.03 Total: 40.83 kcal Atomic # 17 Polarization: -4.72 SS G_CDS: -0.08 Total: -4.80 kcal Total: -70.93 5.61 -65.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047698.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.131 kcal (2) G-P(sol) polarization free energy of solvation -70.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds