Wall clock time and date at job start Mon Mar 30 2020 06:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35912 * 116.99890 * 2 1 4 4 C 1.38266 * 119.83687 * 354.43112 * 3 2 1 5 5 C 1.40682 * 120.04444 * 180.02562 * 4 3 2 6 6 C 1.41456 * 120.12931 * 179.97438 * 5 4 3 7 7 H 1.08008 * 120.00279 * 327.88465 * 6 5 4 8 8 C 1.39926 * 119.99873 * 147.88750 * 6 5 4 9 9 N 1.30831 * 119.99847 * 162.66910 * 8 6 5 10 10 Si 1.86796 * 119.99938 * 342.66990 * 8 6 5 11 11 H 1.48502 * 109.46969 * 85.57138 * 10 8 6 12 12 H 1.48503 * 109.47032 * 205.56962 * 10 8 6 13 13 H 1.48499 * 109.47249 * 325.57104 * 10 8 6 14 14 C 1.40484 * 119.73680 * 0.02562 * 5 4 3 15 15 C 1.39294 * 119.67442 * 0.02562 * 14 5 4 16 16 C 1.47235 * 120.02910 * 180.02562 * 15 14 5 17 17 O 1.21245 * 119.99472 * 6.38975 * 16 15 14 18 18 C 1.50696 * 120.00218 * 186.39378 * 16 15 14 19 19 H 1.08997 * 109.47320 * 165.87493 * 18 16 15 20 20 C 1.52999 * 109.47245 * 285.87377 * 18 16 15 21 21 Cl 1.80302 * 109.47151 * 45.87232 * 18 16 15 22 22 C 1.38780 * 119.83553 * 174.43930 * 3 2 1 23 23 H 1.09000 * 109.47162 * 304.58144 * 1 2 3 24 24 H 1.09001 * 109.46725 * 64.57922 * 1 2 3 25 25 H 1.08999 * 109.47170 * 184.57599 * 1 2 3 26 26 H 1.07991 * 119.97536 * 0.27920 * 4 3 2 27 27 H 0.96999 * 120.00267 * 180.02562 * 9 8 6 28 28 H 1.07995 * 120.16832 * 179.97438 * 14 5 4 29 29 H 1.08997 * 109.46868 * 59.99838 * 20 18 16 30 30 H 1.09000 * 109.47539 * 180.02562 * 20 18 16 31 31 H 1.09004 * 109.47080 * 300.00368 * 20 18 16 32 32 H 1.07998 * 119.86660 * 359.97433 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2947 2.3659 -0.1164 5 6 1.9289 3.6216 -0.1174 6 6 1.1620 4.8043 -0.2369 7 1 0.2501 4.8004 -0.8157 8 6 1.5849 5.9791 0.3945 9 7 1.0915 7.1336 0.0265 10 14 2.8540 5.8992 1.7629 11 1 4.2175 5.9078 1.1746 12 1 2.6930 7.0743 2.6565 13 1 2.6604 4.6520 2.5453 14 6 3.3268 3.6964 -0.0004 15 6 4.0728 2.5257 0.1152 16 6 5.5383 2.5950 0.2388 17 8 6.0865 3.6700 0.3568 18 6 6.3568 1.3298 0.2188 19 1 7.4073 1.5791 0.0689 20 6 6.1921 0.5946 1.5504 21 17 5.7926 0.2702 -1.1265 22 6 3.4271 1.2823 0.1167 23 1 -0.3633 0.5833 0.8461 24 1 -0.3633 0.4412 -0.9282 25 1 -0.3633 -1.0244 0.0820 26 1 0.2200 2.3040 -0.2024 27 1 1.3850 7.9481 0.4640 28 1 3.8209 4.6567 -0.0008 29 1 5.1417 0.3454 1.7003 30 1 6.7845 -0.3202 1.5361 31 1 6.5332 1.2353 2.3637 32 1 4.0066 0.3755 0.2074 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396047733.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:07 Heat of formation + Delta-G solvation = -67.953563 kcal Electronic energy + Delta-G solvation = -18298.281962 eV Core-core repulsion = 15249.955908 eV Total energy + Delta-G solvation = -3048.326054 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.64576 -38.66167 -36.35658 -36.06512 -33.66016 -32.57731 -30.56084 -29.36553 -27.02392 -25.29186 -24.86599 -22.11630 -21.28847 -19.10182 -17.80795 -16.77480 -15.82034 -15.56791 -15.14451 -15.06190 -14.98540 -14.68055 -14.43761 -13.76285 -13.13728 -12.75796 -12.60895 -12.27478 -12.03332 -11.88992 -11.81571 -11.51220 -11.15203 -11.01819 -10.77188 -10.64121 -10.42537 -10.07795 -9.98882 -9.83082 -9.16877 -9.05498 -7.91113 -7.30834 -7.03477 -4.62934 1.30058 2.17995 2.55324 3.00789 3.17284 3.24034 3.28604 3.91593 3.94231 4.16348 4.38440 4.78076 4.86186 5.22523 5.44126 5.53420 5.60604 5.61772 5.72279 5.82969 5.98588 6.14477 6.30602 6.36789 6.45878 6.63892 7.07863 7.20683 7.27356 7.55727 7.70758 7.81101 8.13758 8.23952 8.47875 8.67826 9.98349 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.016297 B = 0.008892 C = 0.006363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.670707 B = 3148.076518 C = 4399.471111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.329 6.329 3 C 0.140 3.860 4 C -0.265 4.265 5 C 0.105 3.895 6 C -0.447 4.447 7 H 0.094 0.906 8 C 0.087 3.913 9 N -0.802 5.802 10 Si 0.897 3.103 11 H -0.251 1.251 12 H -0.287 1.287 13 H -0.250 1.250 14 C -0.191 4.191 15 C -0.108 4.108 16 C 0.401 3.599 17 O -0.448 6.448 18 C -0.048 4.048 19 H 0.119 0.881 20 C -0.158 4.158 21 Cl -0.145 7.145 22 C -0.218 4.218 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.287 0.713 28 H 0.120 0.880 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.233 -10.963 2.646 12.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.244 6.244 3 C 0.096 3.904 4 C -0.285 4.285 5 C 0.102 3.898 6 C -0.475 4.475 7 H 0.112 0.888 8 C -0.133 4.133 9 N -0.426 5.426 10 Si 0.723 3.277 11 H -0.176 1.176 12 H -0.214 1.214 13 H -0.173 1.173 14 C -0.210 4.210 15 C -0.109 4.109 16 C 0.279 3.721 17 O -0.324 6.324 18 C -0.092 4.092 19 H 0.137 0.863 20 C -0.215 4.215 21 Cl -0.119 7.119 22 C -0.238 4.238 23 H 0.070 0.930 24 H 0.068 0.932 25 H 0.105 0.895 26 H 0.130 0.870 27 H 0.098 0.902 28 H 0.138 0.862 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.497 -10.359 2.601 12.012 hybrid contribution 0.130 0.228 0.378 0.460 sum 5.626 -10.132 2.979 11.966 Atomic orbital electron populations 1.22863 0.79714 1.02297 1.01352 1.85946 1.20357 1.28365 1.89685 1.18649 0.91917 0.83233 0.96627 1.21305 0.98559 0.91971 1.16705 1.17422 0.90813 0.92851 0.88756 1.19439 1.08917 0.91303 1.27882 0.88826 1.26113 0.95523 0.94303 0.97312 1.69669 1.37934 0.99109 1.35873 0.86576 0.81534 0.78892 0.80729 1.17631 1.21403 1.17306 1.21583 0.94040 0.96671 1.08730 1.19471 0.91761 0.94300 1.05350 1.22545 0.89910 0.88394 0.71263 1.90530 1.74435 1.31024 1.36365 1.24642 1.01168 0.92402 0.91030 0.86316 1.22159 1.05252 1.00723 0.93363 1.98732 1.91109 1.69518 1.52522 1.20236 0.91304 0.96469 1.15780 0.92957 0.93182 0.89520 0.87048 0.90193 0.86238 0.89551 0.90402 0.90519 0.85630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 9.81 101.05 0.99 1.47 16 2 O -0.33 -6.10 10.49 -19.46 -0.20 -6.30 16 3 C 0.14 2.93 6.66 -39.37 -0.26 2.67 16 4 C -0.27 -5.97 8.76 -38.65 -0.34 -6.31 16 5 C 0.10 2.61 5.05 -106.90 -0.54 2.08 16 6 C -0.45 -11.88 9.56 -37.73 -0.36 -12.24 16 7 H 0.09 2.57 8.06 -52.48 -0.42 2.15 16 8 C 0.09 2.28 5.40 -17.35 -0.09 2.19 16 9 N -0.80 -21.19 13.93 55.55 0.77 -20.42 16 10 Si 0.90 20.99 24.80 -169.99 -4.21 16.77 16 11 H -0.25 -6.00 6.26 56.52 0.35 -5.64 16 12 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 13 H -0.25 -5.90 7.11 56.52 0.40 -5.50 16 14 C -0.19 -4.67 6.86 -38.34 -0.26 -4.93 16 15 C -0.11 -2.33 5.69 -105.15 -0.60 -2.93 16 16 C 0.40 7.73 6.15 -30.66 -0.19 7.54 16 17 O -0.45 -9.73 17.09 5.59 0.10 -9.63 16 18 C -0.05 -0.69 3.49 -27.89 -0.10 -0.79 16 19 H 0.12 1.47 8.13 -51.93 -0.42 1.04 16 20 C -0.16 -1.87 9.10 37.16 0.34 -1.54 16 21 Cl -0.15 -2.18 25.19 -51.86 -1.31 -3.49 16 22 C -0.22 -4.41 7.62 -38.68 -0.29 -4.71 16 23 H 0.05 0.74 7.63 -51.93 -0.40 0.34 16 24 H 0.05 0.70 7.68 -51.93 -0.40 0.30 16 25 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 26 H 0.11 2.33 6.28 -52.49 -0.33 2.00 16 27 H 0.29 6.91 8.30 -40.82 -0.34 6.57 16 28 H 0.12 3.06 4.29 -52.49 -0.23 2.83 16 29 H 0.09 1.12 6.02 -51.93 -0.31 0.81 16 30 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.13 2.25 4.08 -52.49 -0.21 2.04 16 LS Contribution 281.01 15.07 4.23 4.23 Total: -1.00 -28.61 281.01 -5.50 -34.11 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -3.17 Total: 2.23 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -1.71 Total: -17.51 kcal Atomic # 7 Polarization: -21.19 SS G_CDS: 0.77 Total: -20.42 kcal Atomic # 8 Polarization: -15.83 SS G_CDS: -0.11 Total: -15.94 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -4.21 Total: 16.77 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -1.31 Total: -3.49 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.61 -5.50 -34.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396047733.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.845 kcal (2) G-P(sol) polarization free energy of solvation -28.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds