Wall clock time and date at job start Mon Mar 30 2020 06:51:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35908 * 117.00244 * 2 1 4 4 C 1.38264 * 119.83701 * 354.10276 * 3 2 1 5 5 C 1.40676 * 120.05048 * 179.97438 * 4 3 2 6 6 C 1.41454 * 120.13813 * 179.97438 * 5 4 3 7 7 H 1.08005 * 120.00007 * 330.78677 * 6 5 4 8 8 C 1.39918 * 120.00470 * 150.77968 * 6 5 4 9 9 N 1.30828 * 120.00232 * 165.03396 * 8 6 5 10 10 Si 1.86804 * 119.99931 * 345.03495 * 8 6 5 11 11 H 1.48508 * 109.46892 * 93.60320 * 10 8 6 12 12 H 1.48494 * 109.47366 * 213.60413 * 10 8 6 13 13 H 1.48500 * 109.46891 * 333.60725 * 10 8 6 14 14 C 1.40499 * 119.73078 * 359.97438 * 5 4 3 15 15 C 1.39288 * 119.67112 * 0.02562 * 14 5 4 16 16 C 1.47238 * 120.01958 * 179.97438 * 15 14 5 17 17 O 1.21241 * 120.00427 * 359.97438 * 16 15 14 18 18 C 1.50707 * 119.99819 * 179.97438 * 16 15 14 19 19 C 1.52995 * 109.47284 * 180.02562 * 18 16 15 20 20 Cl 1.80301 * 109.47189 * 180.02562 * 19 18 16 21 21 C 1.38775 * 119.83742 * 173.82586 * 3 2 1 22 22 H 1.08995 * 109.46915 * 184.64344 * 1 2 3 23 23 H 1.09001 * 109.46783 * 304.64390 * 1 2 3 24 24 H 1.09002 * 109.46834 * 64.64288 * 1 2 3 25 25 H 1.08004 * 119.97774 * 359.96142 * 4 3 2 26 26 H 0.97005 * 120.00089 * 180.02562 * 9 8 6 27 27 H 1.07998 * 120.15920 * 179.97438 * 14 5 4 28 28 H 1.08995 * 109.47034 * 300.00238 * 18 16 15 29 29 H 1.09002 * 109.46781 * 59.99778 * 18 16 15 30 30 H 1.09005 * 109.46760 * 300.00107 * 19 18 16 31 31 H 1.09003 * 109.47015 * 59.99772 * 19 18 16 32 32 H 1.08001 * 119.86614 * 0.02562 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2955 2.3655 -0.1232 5 6 1.9295 3.6213 -0.1232 6 6 1.1634 4.8037 -0.2497 7 1 0.2309 4.7873 -0.7945 8 6 1.6135 5.9945 0.3309 9 7 1.0790 7.1360 -0.0195 10 14 2.9776 5.9543 1.6066 11 1 4.2867 6.1659 0.9381 12 1 2.7526 7.0294 2.6059 13 1 2.9779 4.6357 2.2896 14 6 3.3268 3.6964 0.0029 15 6 4.0718 2.5260 0.1264 16 6 5.5366 2.5957 0.2585 17 8 6.0947 3.6720 0.2594 18 6 6.3422 1.3291 0.3926 19 6 7.8266 1.6792 0.5140 20 17 8.7905 0.1639 0.6737 21 6 3.4260 1.2827 0.1295 22 1 -0.3633 -1.0243 0.0832 23 1 -0.3633 0.5842 0.8455 24 1 -0.3633 0.4401 -0.9287 25 1 0.2216 2.3033 -0.2198 26 1 1.3913 7.9616 0.3828 27 1 3.8207 4.6568 0.0034 28 1 6.0229 0.7881 1.2833 29 1 6.1865 0.7047 -0.4872 30 1 8.1462 2.2206 -0.3766 31 1 7.9819 2.3035 1.3939 32 1 4.0047 0.3763 0.2293 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396053206.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:34 Heat of formation + Delta-G solvation = -78.995057 kcal Electronic energy + Delta-G solvation = -17779.635324 eV Core-core repulsion = 14730.830476 eV Total energy + Delta-G solvation = -3048.804849 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -39.63314 -38.72260 -36.46199 -36.06526 -33.71346 -32.44929 -30.77551 -29.47280 -27.08590 -25.54566 -24.60006 -21.87651 -21.30552 -19.10859 -17.93019 -16.49315 -15.82196 -15.68066 -15.63363 -15.12417 -15.03844 -14.64936 -14.43204 -13.60085 -13.26538 -13.15666 -12.74863 -12.41737 -12.11348 -11.86350 -11.70548 -11.61160 -11.20323 -11.06374 -10.73439 -10.68122 -10.42066 -10.20507 -10.09688 -9.88324 -9.28101 -9.22068 -8.01427 -7.37411 -7.10618 -4.71103 1.41209 2.16065 2.48909 2.94001 3.13156 3.19804 3.25219 3.87242 3.89690 4.32196 4.40995 4.69196 4.85222 5.17906 5.33126 5.49057 5.57633 5.66212 5.69158 5.78218 5.84981 5.97676 6.22512 6.28661 6.38250 6.58499 7.00456 7.13308 7.21186 7.48837 7.64488 7.88207 8.07244 8.16445 8.40480 8.59931 9.90508 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.015394 B = 0.006625 C = 0.004787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1818.493124 B = 4225.407667 C = 5847.335210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.330 6.330 3 C 0.145 3.855 4 C -0.271 4.271 5 C 0.105 3.895 6 C -0.439 4.439 7 H 0.095 0.905 8 C 0.085 3.915 9 N -0.799 5.799 10 Si 0.903 3.097 11 H -0.257 1.257 12 H -0.288 1.288 13 H -0.244 1.244 14 C -0.191 4.191 15 C -0.107 4.107 16 C 0.403 3.597 17 O -0.465 6.465 18 C -0.175 4.175 19 C -0.019 4.019 20 Cl -0.193 7.193 21 C -0.229 4.229 22 H 0.087 0.913 23 H 0.052 0.948 24 H 0.050 0.950 25 H 0.112 0.888 26 H 0.289 0.711 27 H 0.116 0.884 28 H 0.110 0.890 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.671 -9.692 1.862 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.245 6.245 3 C 0.101 3.899 4 C -0.291 4.291 5 C 0.101 3.899 6 C -0.466 4.466 7 H 0.113 0.887 8 C -0.136 4.136 9 N -0.422 5.422 10 Si 0.729 3.271 11 H -0.183 1.183 12 H -0.215 1.215 13 H -0.168 1.168 14 C -0.210 4.210 15 C -0.108 4.108 16 C 0.282 3.718 17 O -0.342 6.342 18 C -0.213 4.213 19 C -0.082 4.082 20 Cl -0.166 7.166 21 C -0.249 4.249 22 H 0.105 0.895 23 H 0.071 0.929 24 H 0.069 0.931 25 H 0.130 0.870 26 H 0.100 0.900 27 H 0.134 0.866 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 6.046 -9.126 1.862 11.104 hybrid contribution 0.132 0.205 0.461 0.521 sum 6.177 -8.920 2.323 11.096 Atomic orbital electron populations 1.22873 0.79565 1.02372 1.01408 1.85940 1.20512 1.28383 1.89641 1.18619 0.91870 0.83264 0.96164 1.21222 0.98582 0.91840 1.17484 1.17444 0.90844 0.92914 0.88667 1.19522 1.07353 0.90698 1.29071 0.88747 1.26174 0.96420 0.94432 0.96539 1.69648 1.37882 0.99189 1.35494 0.86447 0.80740 0.79533 0.80359 1.18292 1.21543 1.16770 1.21403 0.94018 0.96541 1.09038 1.19571 0.92360 0.94052 1.04789 1.22433 0.89368 0.89077 0.70894 1.90496 1.73616 1.32137 1.37910 1.22340 0.93177 0.99422 1.06366 1.24188 0.91645 0.86296 1.06045 1.98706 1.75844 1.43285 1.98812 1.19748 0.91297 0.95845 1.17977 0.89461 0.92896 0.93127 0.87002 0.90043 0.86642 0.87153 0.87066 0.88264 0.88325 0.86868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 9.81 101.05 0.99 1.46 16 2 O -0.33 -5.95 10.49 -19.45 -0.20 -6.16 16 3 C 0.14 2.96 6.66 -39.37 -0.26 2.70 16 4 C -0.27 -5.97 8.76 -38.65 -0.34 -6.31 16 5 C 0.10 2.56 5.15 -106.90 -0.55 2.01 16 6 C -0.44 -11.43 9.59 -37.73 -0.36 -11.79 16 7 H 0.09 2.54 8.06 -52.48 -0.42 2.11 16 8 C 0.08 2.18 5.45 -17.35 -0.09 2.08 16 9 N -0.80 -20.74 13.93 55.55 0.77 -19.96 16 10 Si 0.90 20.84 24.41 -169.99 -4.15 16.69 16 11 H -0.26 -6.03 6.66 56.52 0.38 -5.66 16 12 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 13 H -0.24 -5.73 6.72 56.52 0.38 -5.35 16 14 C -0.19 -4.55 6.60 -38.34 -0.25 -4.81 16 15 C -0.11 -2.22 5.86 -105.15 -0.62 -2.84 16 16 C 0.40 7.28 7.12 -30.65 -0.22 7.06 16 17 O -0.46 -9.53 15.96 5.59 0.09 -9.44 16 18 C -0.18 -2.30 4.43 -27.88 -0.12 -2.43 16 19 C -0.02 -0.23 5.95 37.16 0.22 -0.01 16 20 Cl -0.19 -2.26 29.15 -51.86 -1.51 -3.77 16 21 C -0.23 -4.46 9.41 -38.68 -0.36 -4.83 16 22 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.05 0.73 7.65 -51.93 -0.40 0.33 16 24 H 0.05 0.68 7.66 -51.93 -0.40 0.29 16 25 H 0.11 2.28 6.28 -52.48 -0.33 1.95 16 26 H 0.29 6.81 8.30 -40.82 -0.34 6.47 16 27 H 0.12 2.88 3.93 -52.49 -0.21 2.67 16 28 H 0.11 1.32 8.07 -51.93 -0.42 0.90 16 29 H 0.11 1.32 8.09 -51.93 -0.42 0.90 16 30 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 31 H 0.10 1.17 8.10 -51.93 -0.42 0.75 16 32 H 0.11 1.88 7.02 -52.49 -0.37 1.51 16 LS Contribution 288.61 15.07 4.35 4.35 Total: -1.00 -27.78 288.61 -6.03 -33.81 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -3.41 Total: 2.17 kcal Atomic # 6 Polarization: -15.72 SS G_CDS: -1.97 Total: -17.69 kcal Atomic # 7 Polarization: -20.74 SS G_CDS: 0.77 Total: -19.96 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: -0.11 Total: -15.59 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.15 Total: 16.69 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -1.51 Total: -3.77 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.78 -6.03 -33.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053206.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.182 kcal (2) G-P(sol) polarization free energy of solvation -27.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.813 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds