Wall clock time and date at job start Mon Mar 30 2020 06:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35899 * 116.99769 * 2 1 4 4 C 1.39159 * 119.93489 * 0.02904 * 3 2 1 5 5 C 1.38522 * 120.44511 * 179.74409 * 4 3 2 6 6 C 1.37665 * 120.30341 * 0.50919 * 5 4 3 7 7 C 1.50701 * 120.07405 * 179.74285 * 6 5 4 8 8 C 1.50704 * 109.47105 * 264.72740 * 7 6 5 9 9 O 1.20759 * 120.00222 * 0.27380 * 8 7 6 10 10 C 1.50701 * 120.00007 * 179.97438 * 8 7 6 11 11 Cl 1.80301 * 109.47031 * 180.02562 * 10 8 7 12 12 C 1.40731 * 119.85634 * 359.47251 * 6 5 4 13 13 C 1.41409 * 120.21911 * 180.29857 * 12 6 5 14 14 H 1.08002 * 119.99572 * 334.52953 * 13 12 6 15 15 C 1.39930 * 120.00017 * 154.53462 * 13 12 6 16 16 N 1.30830 * 120.00450 * 342.83373 * 15 13 12 17 17 Si 1.86799 * 119.99860 * 162.83136 * 15 13 12 18 18 H 1.48500 * 109.47058 * 94.64719 * 17 15 13 19 19 H 1.48501 * 109.47557 * 214.64862 * 17 15 13 20 20 H 1.48497 * 109.47378 * 334.64786 * 17 15 13 21 21 C 1.38099 * 119.93118 * 180.02562 * 3 2 1 22 22 H 1.09006 * 109.46690 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46867 * 299.99440 * 1 2 3 24 24 H 1.08991 * 109.47608 * 59.99539 * 1 2 3 25 25 H 1.07999 * 119.77774 * 359.97438 * 4 3 2 26 26 H 1.08000 * 119.84588 * 180.27719 * 5 4 3 27 27 H 1.08998 * 109.47574 * 144.72789 * 7 6 5 28 28 H 1.09003 * 109.47002 * 24.72591 * 7 6 5 29 29 H 1.08999 * 109.47115 * 300.00461 * 10 8 7 30 30 H 1.09002 * 109.46882 * 60.00191 * 10 8 7 31 31 H 0.96993 * 120.00243 * 180.02562 * 16 15 13 32 32 H 1.08001 * 120.15701 * 0.02764 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2866 2.3771 0.0006 5 6 1.9044 3.6169 0.0060 6 6 3.2780 3.7086 0.0002 7 6 3.9447 5.0601 0.0002 8 6 4.2778 5.4559 -1.4153 9 8 3.9979 4.7190 -2.3301 10 6 4.9543 6.7743 -1.6897 11 17 5.2168 6.9573 -3.4641 12 6 4.0583 2.5374 0.0000 13 6 5.4698 2.6226 0.0004 14 1 5.9580 3.4982 -0.4014 15 6 6.2340 1.5725 0.5213 16 7 5.6762 0.6806 1.2991 17 14 8.0507 1.4441 0.1061 18 1 8.8500 2.0952 1.1750 19 1 8.4350 0.0134 0.0027 20 1 8.3116 2.1215 -1.1893 21 6 3.4251 1.2816 -0.0005 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8898 25 1 0.2084 2.3151 0.0007 26 1 1.3057 4.5157 0.0109 27 1 4.8604 5.0136 0.5895 28 1 3.2702 5.7979 0.4346 29 1 4.3241 7.5877 -1.3301 30 1 5.9147 6.8039 -1.1750 31 1 6.2060 -0.0471 1.6605 32 1 4.0147 0.3767 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396053864.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:49:12 Heat of formation + Delta-G solvation = -71.174188 kcal Electronic energy + Delta-G solvation = -18022.370904 eV Core-core repulsion = 14973.905194 eV Total energy + Delta-G solvation = -3048.465711 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.19153 -38.44221 -36.39182 -35.69039 -33.58333 -31.49492 -29.68924 -29.33077 -27.28283 -25.40724 -24.84089 -21.15986 -20.28281 -18.91086 -17.67726 -16.18566 -15.60368 -15.45961 -15.13222 -14.92415 -14.78431 -14.66861 -13.61822 -13.18387 -13.07610 -12.87390 -12.56492 -12.28074 -11.70658 -11.45597 -11.23582 -11.12665 -10.91744 -10.88432 -10.66550 -10.49695 -10.34208 -10.03009 -9.76243 -9.44859 -9.15057 -9.05206 -7.45221 -6.93149 -6.69142 -4.44727 2.25959 2.49582 2.75734 2.96262 3.06201 3.10407 3.20726 3.90113 4.33771 4.35004 4.60738 5.07707 5.21853 5.54711 5.67297 5.73216 5.77131 5.92661 5.95454 6.12019 6.23135 6.34010 6.57421 6.88266 7.02335 7.26711 7.43124 7.73736 7.78384 7.96761 8.03407 8.06689 8.35202 8.75063 8.83982 8.93347 10.13902 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.012894 B = 0.007986 C = 0.005340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2170.957126 B = 3505.163675 C = 5242.272673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.330 6.330 3 C 0.131 3.869 4 C -0.316 4.316 5 C -0.050 4.050 6 C -0.214 4.214 7 C -0.091 4.091 8 C 0.337 3.663 9 O -0.410 6.410 10 C -0.091 4.091 11 Cl -0.165 7.165 12 C 0.154 3.846 13 C -0.455 4.455 14 H 0.077 0.923 15 C 0.078 3.922 16 N -0.782 5.782 17 Si 0.902 3.098 18 H -0.270 1.270 19 H -0.274 1.274 20 H -0.259 1.259 21 C -0.192 4.192 22 H 0.082 0.918 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.120 0.880 31 H 0.282 0.718 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.763 7.566 -0.378 7.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.245 6.245 3 C 0.087 3.913 4 C -0.336 4.336 5 C -0.068 4.068 6 C -0.215 4.215 7 C -0.129 4.129 8 C 0.208 3.792 9 O -0.279 6.279 10 C -0.154 4.154 11 Cl -0.138 7.138 12 C 0.152 3.848 13 C -0.484 4.484 14 H 0.095 0.905 15 C -0.141 4.141 16 N -0.407 5.407 17 Si 0.726 3.274 18 H -0.195 1.195 19 H -0.199 1.199 20 H -0.183 1.183 21 C -0.212 4.212 22 H 0.100 0.900 23 H 0.063 0.937 24 H 0.063 0.937 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.121 0.879 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.139 0.861 31 H 0.093 0.907 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.756 6.772 -0.872 7.051 hybrid contribution 0.576 0.159 -0.060 0.601 sum -1.180 6.931 -0.932 7.093 Atomic orbital electron populations 1.22745 0.80849 1.01800 1.00471 1.86004 1.19451 1.29158 1.89853 1.18952 0.92510 0.82459 0.97395 1.20384 0.97198 0.92573 1.23458 1.20101 0.93608 0.95167 0.97919 1.19065 0.92493 0.92609 1.17380 1.20591 1.02307 0.96649 0.93305 1.24899 0.76078 0.85426 0.92793 1.90452 1.40174 1.50323 1.46971 1.25126 1.05242 1.01692 0.83360 1.98718 1.97486 1.98050 1.19562 1.17054 0.92701 0.89294 0.85790 1.19450 0.90911 1.02894 1.35136 0.90496 1.25918 1.01116 0.94476 0.92624 1.69834 1.38419 1.11096 1.21322 0.86396 0.82095 0.78745 0.80193 1.19486 1.19885 1.18276 1.20554 0.89307 0.99132 1.12198 0.89960 0.93717 0.93742 0.88773 0.89331 0.87920 0.89949 0.86426 0.86149 0.90699 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 9.81 101.05 0.99 1.61 16 2 O -0.33 -7.52 10.49 -19.42 -0.20 -7.72 16 3 C 0.13 3.25 6.67 -39.29 -0.26 2.99 16 4 C -0.32 -7.22 9.05 -39.13 -0.35 -7.58 16 5 C -0.05 -1.10 9.65 -39.69 -0.38 -1.48 16 6 C -0.21 -4.90 4.43 -103.89 -0.46 -5.36 16 7 C -0.09 -1.62 5.12 -29.03 -0.15 -1.76 16 8 C 0.34 5.88 6.83 -29.03 -0.20 5.69 16 9 O -0.41 -9.05 15.69 6.00 0.09 -8.96 16 10 C -0.09 -1.14 7.07 36.01 0.25 -0.89 16 11 Cl -0.16 -2.46 28.37 -51.86 -1.47 -3.93 16 12 C 0.15 4.02 5.56 -106.84 -0.59 3.43 16 13 C -0.45 -11.54 8.15 -37.74 -0.31 -11.85 16 14 H 0.08 1.85 6.65 -52.49 -0.35 1.50 16 15 C 0.08 1.91 5.14 -17.34 -0.09 1.83 16 16 N -0.78 -20.02 10.98 55.55 0.61 -19.41 16 17 Si 0.90 18.40 29.59 -169.99 -5.03 13.37 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 20 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 21 C -0.19 -5.19 8.62 -38.73 -0.33 -5.52 16 22 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 23 H 0.04 0.70 7.65 -51.93 -0.40 0.31 16 24 H 0.04 0.70 7.65 -51.93 -0.40 0.30 16 25 H 0.09 1.89 6.27 -52.49 -0.33 1.56 16 26 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.10 1.77 7.04 -51.93 -0.37 1.40 16 28 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 29 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 32 H 0.12 3.54 6.21 -52.49 -0.33 3.22 16 LS Contribution 292.87 15.07 4.41 4.41 Total: -1.00 -30.53 292.87 -6.88 -37.41 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.41 Total: 3.73 kcal Atomic # 6 Polarization: -17.02 SS G_CDS: -1.89 Total: -18.90 kcal Atomic # 7 Polarization: -20.02 SS G_CDS: 0.61 Total: -19.41 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -0.11 Total: -16.68 kcal Atomic # 14 Polarization: 18.40 SS G_CDS: -5.03 Total: 13.37 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -1.47 Total: -3.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.53 -6.88 -37.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053864.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.765 kcal (2) G-P(sol) polarization free energy of solvation -30.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds