Wall clock time and date at job start Mon Mar 30 2020 06:40:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35676 * 116.99635 * 2 1 4 4 C 1.39333 * 119.81844 * 359.97438 * 3 2 1 5 5 C 1.36424 * 120.18521 * 180.02562 * 4 3 2 6 6 C 1.40848 * 119.80865 * 359.97438 * 5 4 3 7 7 C 1.41225 * 120.17607 * 179.97438 * 6 5 4 8 8 H 1.07999 * 119.99939 * 154.06477 * 7 6 5 9 9 C 1.39890 * 119.99680 * 334.06589 * 7 6 5 10 10 N 1.30880 * 120.00141 * 343.07353 * 9 7 6 11 11 Si 1.86799 * 119.99568 * 163.07823 * 9 7 6 12 12 H 1.48493 * 109.47434 * 359.97438 * 11 9 7 13 13 H 1.48503 * 109.47008 * 120.00062 * 11 9 7 14 14 H 1.48499 * 109.47151 * 239.99440 * 11 9 7 15 15 C 1.40811 * 119.64789 * 359.97438 * 6 5 4 16 16 C 1.50700 * 120.10018 * 180.02562 * 15 6 5 17 17 H 1.08999 * 109.46862 * 34.99967 * 16 15 6 18 18 Cl 1.80296 * 109.47370 * 154.99801 * 16 15 6 19 19 C 1.50697 * 109.47220 * 275.00156 * 16 15 6 20 20 C 1.50708 * 119.99914 * 84.99559 * 19 16 15 21 21 O 1.20758 * 119.99935 * 264.99846 * 19 16 15 22 22 C 1.36453 * 119.80686 * 0.27773 * 15 6 5 23 23 H 1.08993 * 109.47702 * 60.00222 * 1 2 3 24 24 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.47441 * 299.99736 * 1 2 3 26 26 H 1.08002 * 119.90708 * 0.02562 * 4 3 2 27 27 H 1.08000 * 120.09097 * 179.97438 * 5 4 3 28 28 H 0.97005 * 119.99811 * 180.02562 * 10 9 7 29 29 H 1.09003 * 109.46794 * 89.99940 * 20 19 16 30 30 H 1.08995 * 109.46997 * 209.99754 * 20 19 16 31 31 H 1.08998 * 109.46880 * 329.99996 * 20 19 16 32 32 H 1.08005 * 119.90828 * 179.70631 * 22 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2822 2.3750 -0.0005 5 6 1.8937 3.5945 -0.0011 6 6 3.3000 3.6726 -0.0005 7 6 3.9411 4.9310 -0.0016 8 1 4.9355 5.0308 0.4078 9 6 3.2880 6.0482 -0.5330 10 7 2.2506 5.8892 -1.3150 11 14 3.8967 7.7668 -0.1264 12 1 5.0757 7.6748 0.7717 13 1 4.2816 8.4649 -1.3794 14 1 2.8164 8.5270 0.5519 15 6 4.0634 2.4894 0.0011 16 6 5.5687 2.5611 0.0023 17 1 5.8910 3.4197 0.5913 18 17 6.2417 1.0515 0.7226 19 6 6.0657 2.7075 -1.4128 20 6 6.1452 4.0728 -2.0461 21 8 6.4003 1.7309 -2.0393 22 6 3.4361 1.2776 -0.0036 23 1 -0.3634 0.5137 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.2040 2.3132 -0.0005 27 1 1.3011 4.4974 -0.0019 28 1 1.7980 6.6640 -1.6837 29 1 7.1254 4.5076 -1.8502 30 1 5.9958 3.9834 -3.1220 31 1 5.3720 4.7146 -1.6239 32 1 4.0200 0.3690 -0.0071 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396053893.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:48 Heat of formation + Delta-G solvation = -69.612107 kcal Electronic energy + Delta-G solvation = -18416.893647 eV Core-core repulsion = 15368.495673 eV Total energy + Delta-G solvation = -3048.397974 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.27068 -38.50574 -36.72116 -35.23406 -33.62651 -31.78775 -29.81247 -29.09169 -27.38838 -25.95599 -24.65632 -21.34660 -20.55978 -18.89595 -17.42793 -16.92400 -15.81089 -15.31979 -15.05790 -14.83313 -14.54478 -14.48828 -14.03189 -13.13947 -12.99906 -12.66794 -12.20229 -11.89558 -11.76965 -11.60578 -11.56307 -11.32523 -11.19997 -11.14103 -10.77240 -10.34504 -10.17313 -10.02801 -9.67159 -9.58642 -9.25656 -9.04072 -7.72209 -7.19456 -6.96143 -4.52236 2.22203 2.60212 2.78308 2.88298 2.96271 2.99196 3.05099 3.75009 4.26471 4.38625 4.69839 5.38079 5.51224 5.62259 5.68367 5.73553 5.79956 5.90131 5.95921 6.12546 6.22764 6.23737 6.65313 6.73000 6.83400 7.05829 7.18838 7.33169 7.66901 7.72016 7.89113 8.04069 8.18549 8.42015 8.59870 8.73819 9.96421 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.009615 C = 0.006399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.037484 B = 2911.278052 C = 4374.695237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.332 6.332 3 C -0.002 4.002 4 C -0.166 4.166 5 C -0.126 4.126 6 C 0.108 3.892 7 C -0.468 4.468 8 H 0.085 0.915 9 C 0.079 3.921 10 N -0.788 5.788 11 Si 0.901 3.099 12 H -0.257 1.257 13 H -0.272 1.272 14 H -0.271 1.271 15 C -0.190 4.190 16 C 0.029 3.971 17 H 0.124 0.876 18 Cl -0.179 7.179 19 C 0.370 3.630 20 C -0.216 4.216 21 O -0.458 6.458 22 C -0.087 4.087 23 H 0.043 0.957 24 H 0.082 0.918 25 H 0.043 0.957 26 H 0.099 0.901 27 H 0.126 0.874 28 H 0.283 0.717 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.127 0.873 32 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.530 0.411 1.635 1.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.247 6.247 3 C -0.045 4.045 4 C -0.185 4.185 5 C -0.145 4.145 6 C 0.105 3.895 7 C -0.497 4.497 8 H 0.102 0.898 9 C -0.140 4.140 10 N -0.414 5.414 11 Si 0.725 3.275 12 H -0.181 1.181 13 H -0.198 1.198 14 H -0.196 1.196 15 C -0.192 4.192 16 C -0.015 4.015 17 H 0.141 0.859 18 Cl -0.152 7.152 19 C 0.245 3.755 20 C -0.273 4.273 21 O -0.332 6.332 22 C -0.106 4.106 23 H 0.062 0.938 24 H 0.101 0.899 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.143 0.857 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.145 0.855 32 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 0.688 -0.275 1.202 1.412 hybrid contribution -0.229 1.026 0.188 1.068 sum 0.459 0.752 1.390 1.646 Atomic orbital electron populations 1.22723 0.80778 1.01849 1.00394 1.85845 1.19302 1.28426 1.91127 1.18563 0.91664 0.83129 1.11153 1.20751 0.97923 0.93168 1.06639 1.20908 0.94677 0.95853 1.03067 1.17280 0.91535 0.91183 0.89465 1.19459 1.02790 0.92000 1.35484 0.89750 1.25855 0.94137 1.01407 0.92618 1.69821 1.17045 1.33102 1.21386 0.86355 0.80203 0.81432 0.79515 1.18084 1.19761 1.19605 1.18539 0.89578 0.93701 1.17386 1.23263 0.95168 0.88014 0.95083 0.85879 1.98672 1.87208 1.43838 1.85478 1.24663 0.71290 0.91158 0.88389 1.22612 1.05522 0.96640 1.02497 1.90361 1.37097 1.41886 1.63850 1.19585 0.90968 0.97288 1.02743 0.93815 0.89928 0.93873 0.88249 0.85653 0.90576 0.89501 0.90384 0.85460 0.86992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.33 -6.90 10.48 -18.73 -0.20 -7.10 16 3 C 0.00 -0.04 6.71 -38.78 -0.26 -0.30 16 4 C -0.17 -3.67 8.96 -39.83 -0.36 -4.02 16 5 C -0.13 -2.96 8.63 -39.25 -0.34 -3.29 16 6 C 0.11 2.52 5.56 -106.80 -0.59 1.92 16 7 C -0.47 -10.28 5.65 -37.83 -0.21 -10.49 16 8 H 0.08 1.72 6.19 -52.49 -0.32 1.39 16 9 C 0.08 1.68 5.06 -17.34 -0.09 1.60 16 10 N -0.79 -17.82 10.99 55.54 0.61 -17.21 16 11 Si 0.90 16.21 29.59 -169.99 -5.03 11.18 16 12 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 13 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 14 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 15 C -0.19 -4.27 5.03 -104.29 -0.52 -4.79 16 16 C 0.03 0.57 2.84 -29.04 -0.08 0.49 16 17 H 0.12 2.23 6.48 -51.93 -0.34 1.90 16 18 Cl -0.18 -3.48 26.08 -51.86 -1.35 -4.83 16 19 C 0.37 7.34 6.41 -29.03 -0.19 7.16 16 20 C -0.22 -3.69 10.25 36.01 0.37 -3.32 16 21 O -0.46 -10.17 17.01 6.00 0.10 -10.07 16 22 C -0.09 -2.02 9.05 -39.83 -0.36 -2.38 16 23 H 0.04 0.66 7.65 -51.93 -0.40 0.26 16 24 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 25 H 0.04 0.63 7.65 -51.93 -0.40 0.24 16 26 H 0.10 1.95 6.27 -52.49 -0.33 1.62 16 27 H 0.13 2.99 6.23 -52.49 -0.33 2.67 16 28 H 0.28 5.87 8.30 -40.82 -0.34 5.53 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 31 H 0.13 2.36 4.64 -51.93 -0.24 2.12 16 32 H 0.11 2.58 6.60 -52.48 -0.35 2.23 16 LS Contribution 283.86 15.07 4.28 4.28 Total: -1.00 -26.20 283.86 -6.33 -32.54 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -3.10 Total: 7.05 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: -1.65 Total: -15.84 kcal Atomic # 7 Polarization: -17.82 SS G_CDS: 0.61 Total: -17.21 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: -0.09 Total: -17.17 kcal Atomic # 14 Polarization: 16.21 SS G_CDS: -5.03 Total: 11.18 kcal Atomic # 17 Polarization: -3.48 SS G_CDS: -1.35 Total: -4.83 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -26.20 -6.33 -32.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053893.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.074 kcal (2) G-P(sol) polarization free energy of solvation -26.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds