Wall clock time and date at job start Mon Mar 30 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35675 * 116.99801 * 2 1 4 4 C 1.39333 * 119.81826 * 359.97438 * 3 2 1 5 5 C 1.36420 * 120.18156 * 179.97438 * 4 3 2 6 6 C 1.40850 * 119.81794 * 0.02562 * 5 4 3 7 7 C 1.41211 * 120.18468 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00310 * 150.16604 * 7 6 5 9 9 C 1.39897 * 119.99761 * 330.16203 * 7 6 5 10 10 N 1.30874 * 119.99815 * 161.71607 * 9 7 6 11 11 Si 1.86799 * 119.99842 * 341.72341 * 9 7 6 12 12 H 1.48501 * 109.47228 * 95.41693 * 11 9 7 13 13 H 1.48504 * 109.46641 * 215.40963 * 11 9 7 14 14 H 1.48498 * 109.47304 * 335.41039 * 11 9 7 15 15 C 1.40822 * 119.63654 * 359.77567 * 6 5 4 16 16 C 1.36457 * 119.81023 * 0.45817 * 15 6 5 17 17 C 1.50698 * 119.90662 * 179.79819 * 16 15 6 18 18 H 1.09004 * 109.47217 * 334.71738 * 17 16 15 19 19 Cl 1.80299 * 109.47350 * 214.72015 * 17 16 15 20 20 C 1.50693 * 109.47551 * 94.71830 * 17 16 15 21 21 C 1.50701 * 120.00491 * 275.00225 * 20 17 16 22 22 O 1.20765 * 120.00357 * 94.99990 * 20 17 16 23 23 H 1.08997 * 109.47108 * 59.99676 * 1 2 3 24 24 H 1.08996 * 109.47079 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46807 * 299.99551 * 1 2 3 26 26 H 1.07995 * 119.90520 * 359.97438 * 4 3 2 27 27 H 1.08009 * 120.09443 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00320 * 180.02562 * 10 9 7 29 29 H 1.07999 * 120.09256 * 180.22598 * 15 6 5 30 30 H 1.08999 * 109.47213 * 89.99210 * 21 20 17 31 31 H 1.08998 * 109.47908 * 209.99967 * 21 20 17 32 32 H 1.09004 * 109.47018 * 330.00113 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2823 2.3750 -0.0005 5 6 1.8939 3.5944 0.0000 6 6 3.3002 3.6727 0.0005 7 6 3.9414 4.9308 0.0016 8 1 4.9092 5.0433 0.4673 9 6 3.3227 6.0316 -0.6007 10 7 3.7145 7.2449 -0.3055 11 14 1.9373 5.7695 -1.8260 12 1 0.6314 5.8779 -1.1273 13 1 2.0163 6.8020 -2.8905 14 1 2.0630 4.4207 -2.4342 15 6 4.0635 2.4892 0.0053 16 6 3.4362 1.2774 -0.0001 17 6 4.2509 0.0096 0.0004 18 1 5.2309 0.2073 -0.4339 19 17 3.4044 -1.2491 -0.9742 20 6 4.4182 -0.4795 1.4159 21 6 5.5307 0.0646 2.2747 22 8 3.6608 -1.3075 1.8623 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2042 2.3132 -0.0014 27 1 1.3014 4.4975 0.0000 28 1 3.2854 8.0082 -0.7228 29 1 5.1423 2.5406 0.0095 30 1 5.1771 0.9436 2.8135 31 1 5.8447 -0.6971 2.9883 32 1 6.3751 0.3410 1.6432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396053970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:36 Heat of formation + Delta-G solvation = -59.207911 kcal Electronic energy + Delta-G solvation = -18399.027708 eV Core-core repulsion = 15351.080894 eV Total energy + Delta-G solvation = -3047.946814 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.61300 -38.62683 -36.64468 -35.43391 -33.63792 -32.23962 -29.97918 -29.79392 -27.08159 -26.59932 -24.41897 -21.46645 -20.72074 -19.40428 -17.39564 -17.19119 -15.91824 -15.60149 -15.30460 -14.93602 -14.81695 -14.71055 -13.78582 -13.42530 -12.96610 -12.84854 -12.61050 -12.41239 -12.20886 -11.93868 -11.88030 -11.23443 -11.19110 -11.00983 -10.52406 -10.50654 -10.34722 -10.01365 -9.85346 -9.55095 -9.29972 -9.14714 -8.00105 -7.27136 -7.00075 -4.47597 1.88392 2.39339 2.47581 2.69199 3.03931 3.14976 3.25452 3.91247 4.15512 4.23133 4.47141 5.07652 5.16505 5.20529 5.29389 5.54121 5.59124 5.61979 5.68341 5.78941 5.94939 6.04642 6.12722 6.44652 6.60868 6.80750 6.97201 7.21890 7.37221 7.62723 7.67115 7.75649 8.20034 8.31329 8.55731 8.72028 10.02787 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.007127 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.625360 B = 3927.630223 C = 4567.025798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.298 6.298 3 C 0.024 3.976 4 C -0.156 4.156 5 C -0.193 4.193 6 C 0.070 3.930 7 C -0.448 4.448 8 H 0.092 0.908 9 C 0.085 3.915 10 N -0.810 5.810 11 Si 0.905 3.095 12 H -0.272 1.272 13 H -0.289 1.289 14 H -0.244 1.244 15 C -0.164 4.164 16 C -0.093 4.093 17 C 0.004 3.996 18 H 0.120 0.880 19 Cl -0.139 7.139 20 C 0.358 3.642 21 C -0.197 4.197 22 O -0.433 6.433 23 H 0.041 0.959 24 H 0.083 0.917 25 H 0.041 0.959 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.285 0.715 29 H 0.113 0.887 30 H 0.102 0.898 31 H 0.085 0.915 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.002 -9.240 0.252 9.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.212 6.212 3 C -0.021 4.021 4 C -0.174 4.174 5 C -0.213 4.213 6 C 0.067 3.933 7 C -0.477 4.477 8 H 0.110 0.890 9 C -0.134 4.134 10 N -0.434 5.434 11 Si 0.731 3.269 12 H -0.198 1.198 13 H -0.216 1.216 14 H -0.167 1.167 15 C -0.184 4.184 16 C -0.094 4.094 17 C -0.041 4.041 18 H 0.137 0.863 19 Cl -0.111 7.111 20 C 0.231 3.769 21 C -0.254 4.254 22 O -0.304 6.304 23 H 0.060 0.940 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.123 0.877 27 H 0.123 0.877 28 H 0.095 0.905 29 H 0.131 0.869 30 H 0.120 0.880 31 H 0.104 0.896 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.348 -9.691 0.409 9.706 hybrid contribution -0.920 0.500 -0.679 1.248 sum -1.267 -9.191 -0.270 9.282 Atomic orbital electron populations 1.22762 0.81645 1.01977 1.00009 1.86298 1.18518 1.26305 1.90115 1.18330 0.90871 0.84009 1.08848 1.20543 0.98118 0.92618 1.06155 1.20760 0.95114 0.95823 1.09573 1.17595 0.90989 0.93167 0.91525 1.19323 1.05736 0.90631 1.32011 0.89048 1.26092 0.96738 0.94302 0.96258 1.69706 1.38584 0.99374 1.35757 0.86409 0.80413 0.79844 0.80198 1.19776 1.21648 1.16723 1.20457 0.98484 0.90245 1.09171 1.18112 0.89955 0.91766 1.09555 1.23300 0.98178 0.89851 0.92744 0.86259 1.98707 1.81447 1.57593 1.73400 1.24558 0.83887 0.79537 0.88901 1.22228 0.98400 1.03832 1.00960 1.90415 1.40335 1.26265 1.73372 0.94045 0.89869 0.94077 0.87683 0.87708 0.90471 0.86875 0.87980 0.89600 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.80 101.05 0.99 1.49 16 2 O -0.30 -5.81 7.29 -18.73 -0.14 -5.95 16 3 C 0.02 0.50 6.48 -38.78 -0.25 0.25 16 4 C -0.16 -3.29 8.96 -39.83 -0.36 -3.65 16 5 C -0.19 -4.44 7.12 -39.25 -0.28 -4.72 16 6 C 0.07 1.65 5.10 -106.80 -0.55 1.11 16 7 C -0.45 -11.37 9.56 -37.83 -0.36 -11.73 16 8 H 0.09 2.40 8.06 -52.49 -0.42 1.98 16 9 C 0.08 2.12 5.40 -17.34 -0.09 2.03 16 10 N -0.81 -20.84 13.93 55.55 0.77 -20.06 16 11 Si 0.90 20.05 24.51 -169.99 -4.17 15.88 16 12 H -0.27 -5.86 6.70 56.52 0.38 -5.48 16 13 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 14 H -0.24 -5.56 6.87 56.52 0.39 -5.17 16 15 C -0.16 -3.41 9.36 -39.25 -0.37 -3.77 16 16 C -0.09 -1.84 4.89 -104.87 -0.51 -2.35 16 17 C 0.00 0.07 3.19 -29.04 -0.09 -0.03 16 18 H 0.12 1.64 8.00 -51.93 -0.42 1.22 16 19 Cl -0.14 -2.46 24.95 -51.86 -1.29 -3.75 16 20 C 0.36 5.74 6.41 -29.04 -0.19 5.55 16 21 C -0.20 -2.32 10.25 36.01 0.37 -1.96 16 22 O -0.43 -8.23 17.01 5.99 0.10 -8.13 16 23 H 0.04 0.61 7.64 -51.93 -0.40 0.21 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 25 H 0.04 0.61 7.65 -51.93 -0.40 0.21 16 26 H 0.11 1.97 6.27 -52.49 -0.33 1.64 16 27 H 0.11 2.41 4.73 -52.48 -0.25 2.16 16 28 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.11 2.08 8.06 -52.49 -0.42 1.66 16 30 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.09 0.81 8.08 -51.93 -0.42 0.39 16 LS Contribution 286.10 15.07 4.31 4.31 Total: -1.00 -28.58 286.10 -5.59 -34.17 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -3.49 Total: 1.31 kcal Atomic # 6 Polarization: -16.09 SS G_CDS: -1.69 Total: -17.78 kcal Atomic # 7 Polarization: -20.84 SS G_CDS: 0.77 Total: -20.06 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.03 Total: -14.08 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -4.17 Total: 15.88 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -1.29 Total: -3.75 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.58 -5.59 -34.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.037 kcal (2) G-P(sol) polarization free energy of solvation -28.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds