Wall clock time and date at job start Mon Mar 30 2020 06:42:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35675 * 116.99801 * 2 1 4 4 C 1.39333 * 119.81826 * 359.97438 * 3 2 1 5 5 C 1.36420 * 120.18156 * 179.97438 * 4 3 2 6 6 C 1.40850 * 119.81794 * 0.02562 * 5 4 3 7 7 C 1.41211 * 120.18468 * 180.02562 * 6 5 4 8 8 H 1.07994 * 120.00310 * 150.16604 * 7 6 5 9 9 C 1.39897 * 119.99761 * 330.16203 * 7 6 5 10 10 N 1.30874 * 119.99815 * 161.71607 * 9 7 6 11 11 Si 1.86799 * 119.99842 * 341.72341 * 9 7 6 12 12 H 1.48501 * 109.47228 * 95.41693 * 11 9 7 13 13 H 1.48504 * 109.46641 * 215.40963 * 11 9 7 14 14 H 1.48498 * 109.47304 * 335.41039 * 11 9 7 15 15 C 1.40822 * 119.63654 * 359.77567 * 6 5 4 16 16 C 1.36457 * 119.81023 * 0.45817 * 15 6 5 17 17 C 1.50698 * 119.90662 * 179.79819 * 16 15 6 18 18 H 1.09004 * 109.47217 * 334.71738 * 17 16 15 19 19 Cl 1.80299 * 109.47350 * 214.72015 * 17 16 15 20 20 C 1.50693 * 109.47551 * 94.71830 * 17 16 15 21 21 C 1.50701 * 120.00491 * 275.00225 * 20 17 16 22 22 O 1.20765 * 120.00357 * 94.99990 * 20 17 16 23 23 H 1.08997 * 109.47108 * 59.99676 * 1 2 3 24 24 H 1.08996 * 109.47079 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46807 * 299.99551 * 1 2 3 26 26 H 1.07995 * 119.90520 * 359.97438 * 4 3 2 27 27 H 1.08009 * 120.09443 * 180.02562 * 5 4 3 28 28 H 0.97001 * 120.00320 * 180.02562 * 10 9 7 29 29 H 1.07999 * 120.09256 * 180.22598 * 15 6 5 30 30 H 1.08999 * 109.47213 * 89.99210 * 21 20 17 31 31 H 1.08998 * 109.47908 * 209.99967 * 21 20 17 32 32 H 1.09004 * 109.47018 * 330.00113 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 6 1.2823 2.3750 -0.0005 5 6 1.8939 3.5944 0.0000 6 6 3.3002 3.6727 0.0005 7 6 3.9414 4.9308 0.0016 8 1 4.9092 5.0433 0.4673 9 6 3.3227 6.0316 -0.6007 10 7 3.7145 7.2449 -0.3055 11 14 1.9373 5.7695 -1.8260 12 1 0.6314 5.8779 -1.1273 13 1 2.0163 6.8020 -2.8905 14 1 2.0630 4.4207 -2.4342 15 6 4.0635 2.4892 0.0053 16 6 3.4362 1.2774 -0.0001 17 6 4.2509 0.0096 0.0004 18 1 5.2309 0.2073 -0.4339 19 17 3.4044 -1.2491 -0.9742 20 6 4.4182 -0.4795 1.4159 21 6 5.5307 0.0646 2.2747 22 8 3.6608 -1.3075 1.8623 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.2042 2.3132 -0.0014 27 1 1.3014 4.4975 0.0000 28 1 3.2854 8.0082 -0.7228 29 1 5.1423 2.5406 0.0095 30 1 5.1771 0.9436 2.8135 31 1 5.8447 -0.6971 2.9883 32 1 6.3751 0.3410 1.6432 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396053970.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:42:32 Heat of formation + Delta-G solvation = -75.752879 kcal Electronic energy + Delta-G solvation = -18399.745152 eV Core-core repulsion = 15351.080894 eV Total energy + Delta-G solvation = -3048.664258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.10296 -40.04622 -38.25589 -36.80481 -35.38473 -33.78266 -31.62851 -31.06905 -28.44103 -28.02341 -26.11289 -23.05168 -22.38141 -20.75202 -19.13973 -18.75266 -17.41544 -16.96787 -16.87451 -16.40532 -16.19999 -16.13012 -15.30754 -15.02797 -14.62564 -14.31437 -14.13870 -13.79047 -13.64936 -13.16471 -13.01546 -12.84057 -12.70436 -12.60790 -12.18197 -12.09178 -11.75815 -11.65331 -11.54488 -11.05702 -10.85734 -10.68427 -9.62979 -8.97327 -8.84944 -6.35115 0.41427 0.74354 0.96805 1.26627 1.35430 1.39609 1.48744 2.12223 2.53170 2.78162 3.06587 3.46888 3.68029 3.93151 4.13026 4.20349 4.37884 4.47089 4.51007 4.65697 4.66351 4.75225 4.81635 4.94014 5.11238 5.15081 5.25253 5.51748 5.66915 5.86697 6.03482 6.34380 6.44737 6.59090 6.82835 6.92055 8.23415 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.007127 C = 0.006129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.625360 B = 3927.630223 C = 4567.025798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.308 6.308 3 C 0.032 3.968 4 C -0.167 4.167 5 C -0.205 4.205 6 C 0.048 3.952 7 C -0.476 4.476 8 H 0.068 0.932 9 C 0.051 3.949 10 N -0.852 5.852 11 Si 0.952 3.048 12 H -0.264 1.264 13 H -0.280 1.280 14 H -0.254 1.254 15 C -0.152 4.152 16 C -0.098 4.098 17 C -0.001 4.001 18 H 0.154 0.846 19 Cl -0.148 7.148 20 C 0.360 3.640 21 C -0.192 4.192 22 O -0.467 6.467 23 H 0.050 0.950 24 H 0.107 0.893 25 H 0.048 0.952 26 H 0.128 0.872 27 H 0.100 0.900 28 H 0.291 0.709 29 H 0.136 0.864 30 H 0.101 0.899 31 H 0.102 0.898 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -11.018 0.053 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.222 6.222 3 C -0.013 4.013 4 C -0.185 4.185 5 C -0.224 4.224 6 C 0.046 3.954 7 C -0.506 4.506 8 H 0.086 0.914 9 C -0.163 4.163 10 N -0.479 5.479 11 Si 0.777 3.223 12 H -0.190 1.190 13 H -0.207 1.207 14 H -0.178 1.178 15 C -0.172 4.172 16 C -0.099 4.099 17 C -0.045 4.045 18 H 0.172 0.828 19 Cl -0.121 7.121 20 C 0.235 3.765 21 C -0.249 4.249 22 O -0.341 6.341 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.067 0.933 26 H 0.146 0.854 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -0.568 -11.474 0.212 11.490 hybrid contribution -0.896 0.792 -0.570 1.325 sum -1.464 -10.683 -0.359 10.789 Atomic orbital electron populations 1.23062 0.79507 1.03967 1.00800 1.86304 1.20788 1.25473 1.89668 1.18675 0.91615 0.84494 1.06546 1.20778 0.99527 0.92069 1.06146 1.20830 0.95004 0.96455 1.10150 1.17742 0.91645 0.93440 0.92592 1.19317 1.05421 0.92042 1.33811 0.91419 1.26638 0.98427 0.94035 0.97238 1.69738 1.40535 1.00023 1.37585 0.85681 0.78740 0.79173 0.78729 1.18966 1.20700 1.17785 1.20708 0.99656 0.89684 1.07121 1.18385 0.90200 0.92852 1.08464 1.23574 0.98893 0.88190 0.93870 0.82847 1.98708 1.81870 1.57816 1.73700 1.25053 0.84213 0.78670 0.88591 1.22278 0.97608 1.03969 1.01044 1.90410 1.41926 1.28003 1.73740 0.93101 0.87448 0.93332 0.85422 0.88258 0.89883 0.84609 0.88046 0.87930 0.86650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.80 113.37 1.11 1.73 16 2 O -0.31 -11.22 7.29 -89.93 -0.66 -11.88 16 3 C 0.03 1.26 6.48 22.79 0.15 1.40 16 4 C -0.17 -6.74 8.96 22.11 0.20 -6.54 16 5 C -0.20 -9.26 7.12 22.48 0.16 -9.10 16 6 C 0.05 2.26 5.10 -21.28 -0.11 2.15 16 7 C -0.48 -24.68 9.56 23.40 0.22 -24.46 16 8 H 0.07 3.70 8.06 -2.91 -0.02 3.67 16 9 C 0.05 2.59 5.40 85.24 0.46 3.05 16 10 N -0.85 -45.07 13.93 21.82 0.30 -44.76 16 11 Si 0.95 41.43 24.51 68.60 1.68 43.12 16 12 H -0.26 -11.00 6.70 99.48 0.67 -10.33 16 13 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 14 H -0.25 -11.32 6.87 99.48 0.68 -10.63 16 15 C -0.15 -6.07 9.36 22.49 0.21 -5.86 16 16 C -0.10 -3.65 4.89 -20.03 -0.10 -3.75 16 17 C 0.00 -0.03 3.19 29.10 0.09 0.06 16 18 H 0.15 3.59 8.00 -2.39 -0.02 3.57 16 19 Cl -0.15 -4.89 24.95 -2.72 -0.07 -4.96 16 20 C 0.36 10.51 6.41 29.10 0.19 10.70 16 21 C -0.19 -3.87 10.25 71.24 0.73 -3.14 16 22 O -0.47 -16.81 17.01 -1.47 -0.02 -16.84 16 23 H 0.05 1.35 7.64 -2.39 -0.02 1.33 16 24 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 25 H 0.05 1.30 7.65 -2.39 -0.02 1.29 16 26 H 0.13 4.47 6.27 -2.91 -0.02 4.45 16 27 H 0.10 4.53 4.73 -2.91 -0.01 4.52 16 28 H 0.29 13.97 8.30 -92.71 -0.77 13.20 16 29 H 0.14 4.69 8.06 -2.91 -0.02 4.66 16 30 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.66 8.08 -2.38 -0.02 1.64 16 Total: -1.00 -61.87 286.10 5.63 -56.25 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: 1.08 Total: 12.83 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 3.31 Total: -33.75 kcal Atomic # 7 Polarization: -45.07 SS G_CDS: 0.30 Total: -44.76 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.68 Total: -28.72 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.68 Total: 43.12 kcal Atomic # 17 Polarization: -4.89 SS G_CDS: -0.07 Total: -4.96 kcal Total: -61.87 5.63 -56.25 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396053970.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.507 kcal (2) G-P(sol) polarization free energy of solvation -61.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds