Wall clock time and date at job start Mon Mar 30 2020 06:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35672 * 117.00026 * 2 1 4 4 C 1.39357 * 119.42180 * 0.02562 * 3 2 1 5 5 C 1.36231 * 121.30921 * 179.97438 * 4 3 2 6 6 C 1.40958 * 120.06633 * 0.29591 * 5 4 3 7 7 C 1.40478 * 120.56194 * 179.70184 * 6 5 4 8 8 H 1.07998 * 119.99970 * 147.58265 * 7 6 5 9 9 C 1.40383 * 119.99782 * 327.58396 * 7 6 5 10 10 N 1.30592 * 120.00146 * 350.27953 * 9 7 6 11 11 Si 1.86798 * 120.00017 * 170.28357 * 9 7 6 12 12 H 1.48506 * 109.46981 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47459 * 119.99532 * 11 9 7 14 14 H 1.48502 * 109.47119 * 240.00054 * 11 9 7 15 15 C 1.46735 * 118.87774 * 359.49154 * 6 5 4 16 16 C 1.46609 * 120.61474 * 180.25839 * 15 6 5 17 17 O 1.21344 * 120.00061 * 354.70095 * 16 15 6 18 18 C 1.50699 * 119.99557 * 174.69325 * 16 15 6 19 19 H 1.09001 * 109.47184 * 35.00887 * 18 16 15 20 20 C 1.52992 * 109.47339 * 275.00138 * 18 16 15 21 21 Cl 1.80299 * 109.46730 * 155.00375 * 18 16 15 22 22 C 1.38774 * 119.42651 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.46757 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46522 * 299.99494 * 1 2 3 25 25 H 1.08990 * 109.47284 * 59.99688 * 1 2 3 26 26 H 1.07994 * 119.34695 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.96684 * 180.02562 * 5 4 3 28 28 H 0.96998 * 119.99991 * 180.02562 * 10 9 7 29 29 H 1.09005 * 109.47344 * 60.00503 * 20 18 16 30 30 H 1.09001 * 109.47354 * 179.97438 * 20 18 16 31 31 H 1.09001 * 109.47594 * 300.00498 * 20 18 16 32 32 H 1.08004 * 120.08315 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2742 2.3699 0.0005 5 6 1.8524 3.6034 0.0011 6 6 3.2567 3.7251 -0.0052 7 6 3.8639 4.9919 -0.0110 8 1 4.8114 5.1389 0.4860 9 6 3.2389 6.0668 -0.6628 10 7 2.1971 5.8541 -1.4210 11 14 3.8977 7.8012 -0.4458 12 1 5.0766 7.7736 0.4568 13 1 4.2981 8.3477 -1.7672 14 1 2.8417 8.6613 0.1462 15 6 4.0737 2.5063 -0.0009 16 6 5.5375 2.5886 -0.0014 17 8 6.0845 3.6670 -0.1026 18 6 6.3627 1.3338 0.1237 19 1 5.8603 0.5155 -0.3922 20 6 6.5295 0.9785 1.6025 21 17 7.9844 1.6049 -0.6159 22 6 3.4315 1.2676 -0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.1972 2.2902 0.0014 27 1 1.2342 4.4889 0.0019 28 1 1.7655 6.5968 -1.8716 29 1 5.5491 0.8146 2.0497 30 1 7.1260 0.0707 1.6930 31 1 7.0319 1.7968 2.1184 32 1 4.0119 0.3568 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396056462.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:14 Heat of formation + Delta-G solvation = -70.027386 kcal Electronic energy + Delta-G solvation = -18131.685259 eV Core-core repulsion = 15083.269278 eV Total energy + Delta-G solvation = -3048.415981 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.03288 -38.11029 -35.97442 -35.37242 -33.70887 -32.21955 -29.84134 -29.46217 -27.11371 -25.06504 -24.14665 -22.02165 -20.84008 -18.69387 -17.66356 -16.81480 -15.72582 -15.14799 -14.92203 -14.90420 -14.49195 -14.27633 -13.90684 -13.28324 -12.65785 -12.54260 -12.20978 -12.00058 -11.90021 -11.55222 -11.44693 -11.32430 -11.25390 -11.11642 -10.78924 -10.35481 -10.05628 -10.03669 -9.96841 -9.78233 -9.34832 -8.31981 -7.84378 -7.15189 -7.00125 -4.51149 1.87669 2.56868 2.68608 2.99675 3.08920 3.10533 3.63007 3.81307 4.21866 4.42231 4.79044 5.20529 5.32378 5.43107 5.57703 5.64485 5.78054 5.83567 5.89887 5.97966 6.03542 6.28185 6.46827 6.64170 6.80233 6.95599 7.04603 7.28653 7.65311 7.74764 7.76421 8.24597 8.44421 8.56576 8.70492 8.82763 9.88502 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.009824 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.300361 B = 2849.423639 C = 5087.925916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.334 6.334 3 C -0.018 4.018 4 C -0.151 4.151 5 C -0.121 4.121 6 C 0.129 3.871 7 C -0.399 4.399 8 H 0.108 0.892 9 C 0.067 3.933 10 N -0.777 5.777 11 Si 0.920 3.080 12 H -0.254 1.254 13 H -0.270 1.270 14 H -0.271 1.271 15 C -0.276 4.276 16 C 0.386 3.614 17 O -0.451 6.451 18 C -0.045 4.045 19 H 0.113 0.887 20 C -0.146 4.146 21 Cl -0.176 7.176 22 C -0.070 4.070 23 H 0.082 0.918 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.100 0.900 27 H 0.123 0.877 28 H 0.287 0.713 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 -5.859 3.059 6.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.250 6.250 3 C -0.061 4.061 4 C -0.170 4.170 5 C -0.140 4.140 6 C 0.125 3.875 7 C -0.426 4.426 8 H 0.126 0.874 9 C -0.154 4.154 10 N -0.402 5.402 11 Si 0.743 3.257 12 H -0.177 1.177 13 H -0.195 1.195 14 H -0.196 1.196 15 C -0.279 4.279 16 C 0.268 3.732 17 O -0.329 6.329 18 C -0.089 4.089 19 H 0.131 0.869 20 C -0.203 4.203 21 Cl -0.150 7.150 22 C -0.089 4.089 23 H 0.101 0.899 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.118 0.882 27 H 0.141 0.859 28 H 0.098 0.902 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.206 -5.339 2.796 6.030 hybrid contribution -0.206 0.673 -0.212 0.735 sum -0.411 -4.666 2.584 5.349 Atomic orbital electron populations 1.22716 0.80815 1.01822 1.00408 1.85827 1.19311 1.28421 1.91451 1.18336 0.91635 0.83103 1.13030 1.20697 0.97954 0.93154 1.05201 1.21003 0.95092 0.95652 1.02294 1.18567 0.90715 0.91292 0.86963 1.20226 1.05908 0.91858 1.24581 0.87448 1.26263 0.93584 1.02335 0.93181 1.69685 1.16339 1.34786 1.19352 0.86039 0.80170 0.79813 0.79666 1.17682 1.19532 1.19592 1.20433 0.91689 0.92705 1.23115 1.21500 0.88652 0.88057 0.75011 1.90487 1.74034 1.30039 1.38331 1.24742 0.84245 1.02293 0.97633 0.86873 1.21948 1.03550 1.02428 0.92396 1.98692 1.33135 1.97709 1.85473 1.20049 0.90840 0.96001 1.01988 0.89944 0.93894 0.93809 0.88250 0.85893 0.90211 0.90089 0.91320 0.91253 0.87792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 9.79 101.05 0.99 1.55 16 2 O -0.33 -6.40 10.47 -18.72 -0.20 -6.59 16 3 C -0.02 -0.39 6.69 -38.97 -0.26 -0.65 16 4 C -0.15 -3.26 8.91 -39.89 -0.36 -3.62 16 5 C -0.12 -2.91 8.58 -39.27 -0.34 -3.25 16 6 C 0.13 3.27 5.67 -104.59 -0.59 2.68 16 7 C -0.40 -10.32 7.86 -37.93 -0.30 -10.62 16 8 H 0.11 2.86 5.95 -52.49 -0.31 2.55 16 9 C 0.07 1.62 5.26 -17.27 -0.09 1.53 16 10 N -0.78 -18.89 11.05 55.57 0.61 -18.28 16 11 Si 0.92 18.48 29.57 -169.99 -5.03 13.46 16 12 H -0.25 -5.20 7.11 56.52 0.40 -4.79 16 13 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 14 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 15 C -0.28 -6.45 6.06 -102.61 -0.62 -7.08 16 16 C 0.39 8.52 6.24 -30.93 -0.19 8.33 16 17 O -0.45 -11.27 13.69 5.50 0.08 -11.19 16 18 C -0.04 -0.78 3.17 -27.89 -0.09 -0.86 16 19 H 0.11 1.79 6.56 -51.93 -0.34 1.45 16 20 C -0.15 -2.12 9.30 37.15 0.35 -1.77 16 21 Cl -0.18 -3.13 28.00 -51.86 -1.45 -4.58 16 22 C -0.07 -1.48 9.33 -38.90 -0.36 -1.85 16 23 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.04 0.59 7.62 -51.93 -0.40 0.19 16 25 H 0.04 0.62 7.62 -51.93 -0.40 0.23 16 26 H 0.10 1.88 6.15 -52.49 -0.32 1.56 16 27 H 0.12 2.98 6.49 -52.49 -0.34 2.64 16 28 H 0.29 6.27 8.29 -40.82 -0.34 5.93 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.10 1.92 6.40 -52.48 -0.34 1.59 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -27.87 288.59 -6.77 -34.64 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -3.27 Total: 3.82 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -1.87 Total: -15.62 kcal Atomic # 7 Polarization: -18.89 SS G_CDS: 0.61 Total: -18.28 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.12 Total: -17.78 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.46 kcal Atomic # 17 Polarization: -3.13 SS G_CDS: -1.45 Total: -4.58 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -27.87 -6.77 -34.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056462.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.387 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds