Wall clock time and date at job start Mon Mar 30 2020 06:35:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35672 * 117.00026 * 2 1 4 4 C 1.39357 * 119.42180 * 0.02562 * 3 2 1 5 5 C 1.36231 * 121.30921 * 179.97438 * 4 3 2 6 6 C 1.40958 * 120.06633 * 0.29591 * 5 4 3 7 7 C 1.40478 * 120.56194 * 179.70184 * 6 5 4 8 8 H 1.07998 * 119.99970 * 147.58265 * 7 6 5 9 9 C 1.40383 * 119.99782 * 327.58396 * 7 6 5 10 10 N 1.30592 * 120.00146 * 350.27953 * 9 7 6 11 11 Si 1.86798 * 120.00017 * 170.28357 * 9 7 6 12 12 H 1.48506 * 109.46981 * 359.97438 * 11 9 7 13 13 H 1.48496 * 109.47459 * 119.99532 * 11 9 7 14 14 H 1.48502 * 109.47119 * 240.00054 * 11 9 7 15 15 C 1.46735 * 118.87774 * 359.49154 * 6 5 4 16 16 C 1.46609 * 120.61474 * 180.25839 * 15 6 5 17 17 O 1.21344 * 120.00061 * 354.70095 * 16 15 6 18 18 C 1.50699 * 119.99557 * 174.69325 * 16 15 6 19 19 H 1.09001 * 109.47184 * 35.00887 * 18 16 15 20 20 C 1.52992 * 109.47339 * 275.00138 * 18 16 15 21 21 Cl 1.80299 * 109.46730 * 155.00375 * 18 16 15 22 22 C 1.38774 * 119.42651 * 180.02562 * 3 2 1 23 23 H 1.08997 * 109.46757 * 180.02562 * 1 2 3 24 24 H 1.09004 * 109.46522 * 299.99494 * 1 2 3 25 25 H 1.08990 * 109.47284 * 59.99688 * 1 2 3 26 26 H 1.07994 * 119.34695 * 0.02562 * 4 3 2 27 27 H 1.08000 * 119.96684 * 180.02562 * 5 4 3 28 28 H 0.96998 * 119.99991 * 180.02562 * 10 9 7 29 29 H 1.09005 * 109.47344 * 60.00503 * 20 18 16 30 30 H 1.09001 * 109.47354 * 179.97438 * 20 18 16 31 31 H 1.09001 * 109.47594 * 300.00498 * 20 18 16 32 32 H 1.08004 * 120.08315 * 359.97438 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2742 2.3699 0.0005 5 6 1.8524 3.6034 0.0011 6 6 3.2567 3.7251 -0.0052 7 6 3.8639 4.9919 -0.0110 8 1 4.8114 5.1389 0.4860 9 6 3.2389 6.0668 -0.6628 10 7 2.1971 5.8541 -1.4210 11 14 3.8977 7.8012 -0.4458 12 1 5.0766 7.7736 0.4568 13 1 4.2981 8.3477 -1.7672 14 1 2.8417 8.6613 0.1462 15 6 4.0737 2.5063 -0.0009 16 6 5.5375 2.5886 -0.0014 17 8 6.0845 3.6670 -0.1026 18 6 6.3627 1.3338 0.1237 19 1 5.8603 0.5155 -0.3922 20 6 6.5295 0.9785 1.6025 21 17 7.9844 1.6049 -0.6159 22 6 3.4315 1.2676 -0.0005 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3632 0.5138 0.8901 25 1 -0.3633 0.5138 -0.8899 26 1 0.1972 2.2902 0.0014 27 1 1.2342 4.4889 0.0019 28 1 1.7655 6.5968 -1.8716 29 1 5.5491 0.8146 2.0497 30 1 7.1260 0.0707 1.6930 31 1 7.0319 1.7968 2.1184 32 1 4.0119 0.3568 -0.0005 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396056462.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:11 Heat of formation + Delta-G solvation = -85.073779 kcal Electronic energy + Delta-G solvation = -18132.337720 eV Core-core repulsion = 15083.269278 eV Total energy + Delta-G solvation = -3049.068442 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.70490 -39.75146 -37.63568 -36.85925 -35.44646 -33.69892 -31.47200 -31.20755 -28.52709 -26.64474 -25.69433 -23.65935 -22.53864 -20.31769 -19.45194 -18.40762 -17.39907 -16.79354 -16.44646 -16.29139 -16.04918 -15.86798 -15.49645 -14.91563 -14.25403 -14.13479 -13.79058 -13.69634 -13.19310 -13.07123 -12.92324 -12.86533 -12.72630 -12.57068 -12.47485 -11.88029 -11.66250 -11.57970 -11.54210 -11.34804 -11.05684 -10.04761 -9.60323 -8.91886 -8.75528 -6.36395 0.12171 0.94754 1.15489 1.33947 1.46682 1.48902 1.91999 2.16125 2.64450 2.79507 3.21991 3.53803 3.96714 3.98423 4.26670 4.29435 4.51835 4.52550 4.70603 4.73569 4.77864 4.83539 4.96352 5.02648 5.14671 5.18365 5.30587 5.53505 5.87605 5.94502 6.01388 6.47186 6.67466 6.74354 6.98350 7.08717 8.15066 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.011209 B = 0.009824 C = 0.005502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2497.300361 B = 2849.423639 C = 5087.925916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C -0.013 4.013 4 C -0.146 4.146 5 C -0.145 4.145 6 C 0.099 3.901 7 C -0.438 4.438 8 H 0.087 0.913 9 C 0.033 3.967 10 N -0.805 5.805 11 Si 0.980 3.020 12 H -0.266 1.266 13 H -0.266 1.266 14 H -0.252 1.252 15 C -0.290 4.290 16 C 0.383 3.617 17 O -0.487 6.487 18 C -0.038 4.038 19 H 0.136 0.864 20 C -0.141 4.141 21 Cl -0.178 7.178 22 C -0.070 4.070 23 H 0.119 0.881 24 H 0.051 0.949 25 H 0.046 0.954 26 H 0.126 0.874 27 H 0.111 0.889 28 H 0.295 0.705 29 H 0.087 0.913 30 H 0.101 0.899 31 H 0.059 0.941 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.968 -7.771 3.341 8.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.257 6.257 3 C -0.056 4.056 4 C -0.165 4.165 5 C -0.164 4.164 6 C 0.095 3.905 7 C -0.466 4.466 8 H 0.105 0.895 9 C -0.185 4.185 10 N -0.431 5.431 11 Si 0.801 3.199 12 H -0.190 1.190 13 H -0.190 1.190 14 H -0.176 1.176 15 C -0.293 4.293 16 C 0.266 3.734 17 O -0.367 6.367 18 C -0.082 4.082 19 H 0.154 0.846 20 C -0.198 4.198 21 Cl -0.152 7.152 22 C -0.089 4.089 23 H 0.137 0.863 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.144 0.856 27 H 0.129 0.871 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.650 -7.279 3.080 7.931 hybrid contribution -0.143 1.034 -0.294 1.085 sum -0.792 -6.245 2.786 6.884 Atomic orbital electron populations 1.23082 0.78233 1.04531 1.00924 1.85827 1.21912 1.26825 1.91090 1.18505 0.91985 0.83885 1.11261 1.20959 0.99497 0.92477 1.03610 1.20931 0.94661 0.96324 1.04487 1.18960 0.91814 0.92147 0.87571 1.20185 1.05965 0.93411 1.27008 0.89495 1.26908 0.93813 1.05237 0.92511 1.69693 1.17290 1.36029 1.20067 0.85169 0.79462 0.75877 0.79401 1.18980 1.19041 1.17607 1.20817 0.92815 0.93066 1.22621 1.22042 0.88748 0.89265 0.73301 1.90476 1.74606 1.32009 1.39616 1.24699 0.83587 0.99890 1.00009 0.84595 1.21983 1.04478 1.03543 0.89823 1.98696 1.33097 1.97756 1.85655 1.20334 0.91392 0.96267 1.00911 0.86299 0.93047 0.93542 0.85648 0.87113 0.89366 0.89448 0.87985 0.92199 0.84613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.69 9.79 113.37 1.11 1.80 16 2 O -0.34 -11.90 10.47 -89.89 -0.94 -12.84 16 3 C -0.01 -0.52 6.69 22.67 0.15 -0.36 16 4 C -0.15 -6.20 8.91 22.07 0.20 -6.00 16 5 C -0.14 -7.10 8.58 22.47 0.19 -6.91 16 6 C 0.10 5.18 5.67 -19.85 -0.11 5.07 16 7 C -0.44 -23.81 7.86 23.34 0.18 -23.62 16 8 H 0.09 4.94 5.95 -2.91 -0.02 4.92 16 9 C 0.03 1.64 5.26 85.40 0.45 2.09 16 10 N -0.81 -40.36 11.05 21.90 0.24 -40.12 16 11 Si 0.98 39.07 29.57 68.60 2.03 41.10 16 12 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 13 H -0.27 -10.27 7.11 99.48 0.71 -9.56 16 14 H -0.25 -9.17 7.11 99.48 0.71 -8.47 16 15 C -0.29 -13.59 6.06 -18.56 -0.11 -13.70 16 16 C 0.38 16.91 6.24 27.87 0.17 17.09 16 17 O -0.49 -25.04 13.69 -3.23 -0.04 -25.09 16 18 C -0.04 -1.24 3.17 29.85 0.09 -1.14 16 19 H 0.14 3.86 6.56 -2.39 -0.02 3.85 16 20 C -0.14 -3.73 9.30 71.98 0.67 -3.06 16 21 Cl -0.18 -6.08 28.00 -2.72 -0.08 -6.16 16 22 C -0.07 -2.86 9.33 22.71 0.21 -2.65 16 23 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 24 H 0.05 1.24 7.62 -2.38 -0.02 1.22 16 25 H 0.05 1.17 7.62 -2.39 -0.02 1.15 16 26 H 0.13 4.52 6.15 -2.91 -0.02 4.50 16 27 H 0.11 5.59 6.49 -2.91 -0.02 5.57 16 28 H 0.30 13.20 8.29 -92.71 -0.77 12.43 16 29 H 0.09 2.22 8.14 -2.38 -0.02 2.20 16 30 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.14 4.55 6.40 -2.91 -0.02 4.53 16 Total: -1.00 -62.12 288.59 5.57 -56.55 By element: Atomic # 1 Polarization: 16.82 SS G_CDS: 1.15 Total: 17.97 kcal Atomic # 6 Polarization: -34.62 SS G_CDS: 3.21 Total: -31.41 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.24 Total: -40.12 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.99 Total: -37.93 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 17 Polarization: -6.08 SS G_CDS: -0.08 Total: -6.16 kcal Total: -62.12 5.57 -56.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396056462.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.522 kcal (2) G-P(sol) polarization free energy of solvation -62.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds