Wall clock time and date at job start Mon Mar 30 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 117.00069 * 2 1 4 4 C 1.39160 * 119.93363 * 359.97438 * 3 2 1 5 5 C 1.38513 * 120.44443 * 180.02562 * 4 3 2 6 6 C 1.37674 * 120.30508 * 359.69491 * 5 4 3 7 7 C 1.40729 * 119.85223 * 0.56188 * 6 5 4 8 8 C 1.41406 * 120.21322 * 179.73775 * 7 6 5 9 9 H 1.08006 * 119.99506 * 149.75879 * 8 7 6 10 10 C 1.39929 * 120.00177 * 329.48793 * 8 7 6 11 11 N 1.30836 * 119.99762 * 162.15004 * 10 8 7 12 12 Si 1.86796 * 120.00229 * 342.14917 * 10 8 7 13 13 H 1.48499 * 109.47384 * 95.36270 * 12 10 8 14 14 H 1.48497 * 109.47171 * 215.36587 * 12 10 8 15 15 H 1.48508 * 109.46783 * 335.36044 * 12 10 8 16 16 C 1.38098 * 119.93324 * 180.02562 * 3 2 1 17 17 C 1.50697 * 120.15106 * 359.97438 * 16 3 2 18 18 C 1.50700 * 109.47583 * 269.98430 * 17 16 3 19 19 O 1.20762 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.50705 * 120.00044 * 180.02562 * 18 17 16 21 21 Cl 1.80301 * 109.46767 * 179.97438 * 20 18 17 22 22 H 1.08989 * 109.47174 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46888 * 300.00419 * 1 2 3 24 24 H 1.09001 * 109.47265 * 59.99499 * 1 2 3 25 25 H 1.08005 * 119.77608 * 0.02703 * 4 3 2 26 26 H 1.08003 * 119.84805 * 180.02562 * 5 4 3 27 27 H 1.08007 * 120.07210 * 180.30045 * 6 5 4 28 28 H 0.97004 * 119.99413 * 180.02562 * 11 10 8 29 29 H 1.09004 * 109.47370 * 29.98589 * 17 16 3 30 30 H 1.09008 * 109.47051 * 149.97996 * 17 16 3 31 31 H 1.08996 * 109.46955 * 299.99181 * 20 18 17 32 32 H 1.09000 * 109.46927 * 59.99741 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2868 2.3771 -0.0005 5 6 1.9046 3.6168 -0.0011 6 6 3.2783 3.7085 0.0052 7 6 4.0585 2.5372 0.0003 8 6 5.4700 2.6225 0.0012 9 1 6.0575 1.8463 0.4690 10 6 6.1056 3.7095 -0.6091 11 7 7.3523 3.9836 -0.3220 12 14 5.1744 4.7691 -1.8335 13 1 4.6125 5.9537 -1.1363 14 1 6.1001 5.2179 -2.9043 15 1 4.0701 3.9778 -2.4335 16 6 3.4252 1.2816 -0.0005 17 6 4.2478 0.0189 -0.0005 18 6 4.5229 -0.4015 1.4202 19 8 4.0955 0.2566 2.3382 20 6 5.3324 -1.6426 1.6955 21 17 5.4870 -1.8764 3.4766 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.2085 2.3152 -0.0005 26 1 1.3059 4.5158 -0.0011 27 1 3.7561 4.6771 0.0097 28 1 7.7928 4.7374 -0.7448 29 1 3.7002 -0.7716 -0.5138 30 1 5.1915 0.2001 -0.5151 31 1 4.8330 -2.5066 1.2573 32 1 6.3240 -1.5344 1.2561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396060089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:06 Heat of formation + Delta-G solvation = -69.745667 kcal Electronic energy + Delta-G solvation = -18339.522361 eV Core-core repulsion = 15291.118595 eV Total energy + Delta-G solvation = -3048.403765 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.48656 -38.37366 -36.57799 -35.63725 -33.48782 -32.09753 -29.99414 -29.44357 -27.00263 -26.24002 -24.68528 -21.21369 -20.47328 -18.96085 -17.90575 -16.25391 -15.66523 -15.59211 -15.30741 -14.94986 -14.93251 -14.74287 -14.08053 -13.48783 -12.87422 -12.78047 -12.64363 -12.38837 -11.99227 -11.70819 -11.48421 -11.27850 -10.98589 -10.83700 -10.60039 -10.42567 -10.26594 -10.05157 -9.84111 -9.58059 -9.21244 -9.05851 -7.62859 -7.11706 -7.00751 -4.58910 2.30524 2.53509 2.57846 2.69541 3.09204 3.18224 3.29384 3.94460 4.03960 4.33697 4.51333 5.16473 5.30165 5.33523 5.48636 5.56584 5.69815 5.75357 5.94401 6.01189 6.12953 6.25665 6.48140 6.58207 6.70930 6.88147 7.33608 7.45351 7.54729 7.68049 7.82027 8.11967 8.21850 8.38713 8.58588 8.74353 10.00122 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.008514 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.887029 B = 3287.949693 C = 4777.377650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.166 3.834 4 C -0.320 4.320 5 C -0.048 4.048 6 C -0.257 4.257 7 C 0.131 3.869 8 C -0.441 4.441 9 H 0.091 0.909 10 C 0.086 3.914 11 N -0.802 5.802 12 Si 0.912 3.088 13 H -0.270 1.270 14 H -0.291 1.291 15 H -0.243 1.243 16 C -0.204 4.204 17 C -0.090 4.090 18 C 0.343 3.657 19 O -0.416 6.416 20 C -0.089 4.089 21 Cl -0.165 7.165 22 H 0.085 0.915 23 H 0.047 0.953 24 H 0.047 0.953 25 H 0.100 0.900 26 H 0.096 0.904 27 H 0.102 0.898 28 H 0.286 0.714 29 H 0.089 0.911 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.418 -7.929 -2.038 9.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.243 6.243 3 C 0.122 3.878 4 C -0.340 4.340 5 C -0.066 4.066 6 C -0.276 4.276 7 C 0.127 3.873 8 C -0.469 4.469 9 H 0.109 0.891 10 C -0.134 4.134 11 N -0.426 5.426 12 Si 0.738 3.262 13 H -0.196 1.196 14 H -0.219 1.219 15 H -0.166 1.166 16 C -0.206 4.206 17 C -0.127 4.127 18 C 0.215 3.785 19 O -0.285 6.285 20 C -0.152 4.152 21 Cl -0.139 7.139 22 H 0.104 0.896 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.118 0.882 26 H 0.114 0.886 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.108 0.892 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.275 -7.660 -1.398 9.405 hybrid contribution -0.438 0.698 -0.441 0.935 sum -5.713 -6.961 -1.839 9.191 Atomic orbital electron populations 1.22804 0.80178 1.02152 1.00850 1.85935 1.20023 1.28844 1.89476 1.18552 0.91454 0.82768 0.95026 1.20409 0.97532 0.92364 1.23685 1.20386 0.94393 0.95534 0.96316 1.20958 0.93364 0.97522 1.15724 1.17282 0.93257 0.89606 0.87122 1.19389 0.90113 1.06273 1.31095 0.89091 1.26167 0.94918 0.96018 0.96268 1.69701 1.12494 1.25260 1.35109 0.86303 0.79915 0.80244 0.79726 1.19636 1.21855 1.16610 1.18430 0.88744 0.93657 1.19736 1.20473 1.01832 0.96825 0.93557 1.24789 0.77232 0.83779 0.92745 1.90431 1.40651 1.50293 1.47122 1.25090 1.05069 1.01967 0.83095 1.98714 1.98617 1.97499 1.19022 0.89647 0.93403 0.93420 0.88179 0.88621 0.88054 0.90331 0.89240 0.87565 0.86398 0.86074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 9.81 101.05 0.99 1.50 16 2 O -0.33 -6.23 9.52 -19.44 -0.19 -6.41 16 3 C 0.17 3.62 6.65 -39.29 -0.26 3.36 16 4 C -0.32 -6.79 9.05 -39.14 -0.35 -7.14 16 5 C -0.05 -1.05 10.02 -39.69 -0.40 -1.45 16 6 C -0.26 -6.23 7.17 -38.85 -0.28 -6.51 16 7 C 0.13 3.27 5.09 -106.85 -0.54 2.72 16 8 C -0.44 -11.44 8.53 -37.74 -0.32 -11.76 16 9 H 0.09 2.44 7.18 -52.48 -0.38 2.06 16 10 C 0.09 2.19 5.40 -17.34 -0.09 2.09 16 11 N -0.80 -20.72 13.93 55.55 0.77 -19.95 16 12 Si 0.91 20.29 24.53 -169.99 -4.17 16.12 16 13 H -0.27 -5.93 6.72 56.52 0.38 -5.55 16 14 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.24 -5.52 6.86 56.52 0.39 -5.14 16 16 C -0.20 -4.66 4.45 -103.77 -0.46 -5.12 16 17 C -0.09 -1.69 4.95 -29.04 -0.14 -1.83 16 18 C 0.34 6.41 7.15 -29.03 -0.21 6.20 16 19 O -0.42 -9.56 15.69 6.00 0.09 -9.47 16 20 C -0.09 -1.23 7.08 36.01 0.25 -0.97 16 21 Cl -0.17 -2.62 28.37 -51.86 -1.47 -4.09 16 22 H 0.09 0.94 8.14 -51.94 -0.42 0.52 16 23 H 0.05 0.67 7.66 -51.92 -0.40 0.27 16 24 H 0.05 0.63 7.65 -51.93 -0.40 0.23 16 25 H 0.10 1.84 6.27 -52.48 -0.33 1.51 16 26 H 0.10 1.82 8.06 -52.48 -0.42 1.40 16 27 H 0.10 2.45 4.79 -52.48 -0.25 2.19 16 28 H 0.29 6.71 8.30 -40.82 -0.34 6.37 16 29 H 0.09 1.46 7.52 -51.93 -0.39 1.06 16 30 H 0.11 1.94 6.86 -51.92 -0.36 1.59 16 31 H 0.12 1.23 8.14 -51.93 -0.42 0.81 16 32 H 0.12 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 286.77 15.07 4.32 4.32 Total: -1.00 -30.06 286.77 -5.81 -35.87 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.36 Total: 2.51 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: -1.82 Total: -18.91 kcal Atomic # 7 Polarization: -20.72 SS G_CDS: 0.77 Total: -19.95 kcal Atomic # 8 Polarization: -15.79 SS G_CDS: -0.09 Total: -15.88 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.17 Total: 16.12 kcal Atomic # 17 Polarization: -2.62 SS G_CDS: -1.47 Total: -4.09 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.06 -5.81 -35.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.873 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds