Wall clock time and date at job start Mon Mar 30 2020 06:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 117.00069 * 2 1 4 4 C 1.39160 * 119.93363 * 359.97438 * 3 2 1 5 5 C 1.38513 * 120.44443 * 180.02562 * 4 3 2 6 6 C 1.37674 * 120.30508 * 359.69491 * 5 4 3 7 7 C 1.40729 * 119.85223 * 0.56188 * 6 5 4 8 8 C 1.41406 * 120.21322 * 179.73775 * 7 6 5 9 9 H 1.08006 * 119.99506 * 149.75879 * 8 7 6 10 10 C 1.39929 * 120.00177 * 329.48793 * 8 7 6 11 11 N 1.30836 * 119.99762 * 162.15004 * 10 8 7 12 12 Si 1.86796 * 120.00229 * 342.14917 * 10 8 7 13 13 H 1.48499 * 109.47384 * 95.36270 * 12 10 8 14 14 H 1.48497 * 109.47171 * 215.36587 * 12 10 8 15 15 H 1.48508 * 109.46783 * 335.36044 * 12 10 8 16 16 C 1.38098 * 119.93324 * 180.02562 * 3 2 1 17 17 C 1.50697 * 120.15106 * 359.97438 * 16 3 2 18 18 C 1.50700 * 109.47583 * 269.98430 * 17 16 3 19 19 O 1.20762 * 119.99889 * 359.97438 * 18 17 16 20 20 C 1.50705 * 120.00044 * 180.02562 * 18 17 16 21 21 Cl 1.80301 * 109.46767 * 179.97438 * 20 18 17 22 22 H 1.08989 * 109.47174 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.46888 * 300.00419 * 1 2 3 24 24 H 1.09001 * 109.47265 * 59.99499 * 1 2 3 25 25 H 1.08005 * 119.77608 * 0.02703 * 4 3 2 26 26 H 1.08003 * 119.84805 * 180.02562 * 5 4 3 27 27 H 1.08007 * 120.07210 * 180.30045 * 6 5 4 28 28 H 0.97004 * 119.99413 * 180.02562 * 11 10 8 29 29 H 1.09004 * 109.47370 * 29.98589 * 17 16 3 30 30 H 1.09008 * 109.47051 * 149.97996 * 17 16 3 31 31 H 1.08996 * 109.46955 * 299.99181 * 20 18 17 32 32 H 1.09000 * 109.46927 * 59.99741 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2868 2.3771 -0.0005 5 6 1.9046 3.6168 -0.0011 6 6 3.2783 3.7085 0.0052 7 6 4.0585 2.5372 0.0003 8 6 5.4700 2.6225 0.0012 9 1 6.0575 1.8463 0.4690 10 6 6.1056 3.7095 -0.6091 11 7 7.3523 3.9836 -0.3220 12 14 5.1744 4.7691 -1.8335 13 1 4.6125 5.9537 -1.1363 14 1 6.1001 5.2179 -2.9043 15 1 4.0701 3.9778 -2.4335 16 6 3.4252 1.2816 -0.0005 17 6 4.2478 0.0189 -0.0005 18 6 4.5229 -0.4015 1.4202 19 8 4.0955 0.2566 2.3382 20 6 5.3324 -1.6426 1.6955 21 17 5.4870 -1.8764 3.4766 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 0.2085 2.3152 -0.0005 26 1 1.3059 4.5158 -0.0011 27 1 3.7561 4.6771 0.0097 28 1 7.7928 4.7374 -0.7448 29 1 3.7002 -0.7716 -0.5138 30 1 5.1915 0.2001 -0.5151 31 1 4.8330 -2.5066 1.2573 32 1 6.3240 -1.5344 1.2561 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396060089.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:06 Heat of formation + Delta-G solvation = -88.315384 kcal Electronic energy + Delta-G solvation = -18340.327604 eV Core-core repulsion = 15291.118595 eV Total energy + Delta-G solvation = -3049.209009 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.07086 -39.89564 -38.21188 -36.85454 -35.32369 -33.72243 -31.70229 -30.84944 -28.25094 -27.84839 -26.39060 -22.90909 -22.13033 -20.47024 -19.61159 -17.96173 -17.17703 -17.04652 -17.00212 -16.47915 -16.28806 -16.18402 -15.65948 -15.10678 -14.33684 -14.28861 -14.12681 -13.91006 -13.67029 -13.30441 -13.03427 -12.80985 -12.67508 -12.42063 -12.06199 -11.86373 -11.71269 -11.56876 -11.43673 -11.27662 -11.02055 -10.55405 -9.41098 -8.89381 -8.78244 -6.50651 0.73215 0.90742 1.13444 1.21775 1.29420 1.41970 1.51255 2.14788 2.57640 2.66150 3.04719 3.55202 4.09504 4.15974 4.27818 4.33472 4.42313 4.47937 4.48203 4.55535 4.74668 4.78611 4.79859 4.96704 5.07606 5.11708 5.62702 5.68711 5.81599 5.94123 6.01514 6.32304 6.67128 6.68326 6.78521 6.92123 8.17884 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014939 B = 0.008514 C = 0.005860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.887029 B = 3287.949693 C = 4777.377650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.335 6.335 3 C 0.158 3.842 4 C -0.313 4.313 5 C -0.055 4.055 6 C -0.283 4.283 7 C 0.109 3.891 8 C -0.466 4.466 9 H 0.066 0.934 10 C 0.053 3.947 11 N -0.842 5.842 12 Si 0.962 3.038 13 H -0.267 1.267 14 H -0.277 1.277 15 H -0.252 1.252 16 C -0.217 4.217 17 C -0.092 4.092 18 C 0.345 3.655 19 O -0.469 6.469 20 C -0.080 4.080 21 Cl -0.182 7.182 22 H 0.121 0.879 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.133 0.867 26 H 0.126 0.874 27 H 0.095 0.905 28 H 0.293 0.707 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.162 0.838 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.514 -9.208 -3.011 12.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.249 6.249 3 C 0.113 3.887 4 C -0.332 4.332 5 C -0.073 4.073 6 C -0.302 4.302 7 C 0.107 3.893 8 C -0.496 4.496 9 H 0.084 0.916 10 C -0.163 4.163 11 N -0.468 5.468 12 Si 0.786 3.214 13 H -0.193 1.193 14 H -0.204 1.204 15 H -0.175 1.175 16 C -0.219 4.219 17 C -0.129 4.129 18 C 0.220 3.780 19 O -0.342 6.342 20 C -0.142 4.142 21 Cl -0.155 7.155 22 H 0.139 0.861 23 H 0.068 0.932 24 H 0.078 0.922 25 H 0.151 0.849 26 H 0.144 0.856 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.180 0.820 32 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.375 -8.959 -2.383 11.846 hybrid contribution -0.026 0.947 -0.124 0.955 sum -7.400 -8.012 -2.507 11.191 Atomic orbital electron populations 1.23192 0.77442 1.04880 1.01495 1.85919 1.22727 1.27228 1.88999 1.18701 0.91476 0.84157 0.94320 1.20889 0.99341 0.91862 1.21120 1.20762 0.93793 0.97323 0.95434 1.21100 0.94656 0.97134 1.17321 1.17503 0.93047 0.91030 0.87749 1.19331 0.90724 1.06589 1.32912 0.91581 1.26745 0.95470 0.96812 0.97240 1.69726 1.13628 1.26616 1.36813 0.85531 0.78776 0.78834 0.78230 1.19301 1.20392 1.17521 1.18881 0.90195 0.94461 1.18391 1.20570 1.01724 0.96214 0.94439 1.25214 0.76372 0.84568 0.91881 1.90420 1.43203 1.52325 1.48264 1.25182 1.05979 1.00924 0.82115 1.98717 1.98630 1.97398 1.20797 0.86106 0.93205 0.92170 0.84920 0.85562 0.88720 0.89606 0.86275 0.87559 0.82042 0.83599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.59 9.81 113.37 1.11 1.71 16 2 O -0.33 -11.64 9.52 -92.47 -0.88 -12.52 16 3 C 0.16 6.59 6.65 22.46 0.15 6.74 16 4 C -0.31 -12.41 9.05 22.56 0.20 -12.21 16 5 C -0.05 -2.32 10.02 22.20 0.22 -2.10 16 6 C -0.28 -13.74 7.17 22.75 0.16 -13.58 16 7 C 0.11 5.56 5.09 -21.31 -0.11 5.45 16 8 C -0.47 -25.15 8.53 23.46 0.20 -24.95 16 9 H 0.07 3.75 7.18 -2.91 -0.02 3.73 16 10 C 0.05 2.77 5.40 85.25 0.46 3.23 16 11 N -0.84 -45.02 13.93 21.82 0.30 -44.72 16 12 Si 0.96 42.39 24.53 68.60 1.68 44.07 16 13 H -0.27 -11.47 6.72 99.48 0.67 -10.81 16 14 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 15 H -0.25 -11.28 6.86 99.48 0.68 -10.60 16 16 C -0.22 -9.85 4.45 -19.31 -0.09 -9.93 16 17 C -0.09 -3.40 4.95 29.10 0.14 -3.25 16 18 C 0.34 12.57 7.15 29.10 0.21 12.78 16 19 O -0.47 -21.74 15.69 -1.46 -0.02 -21.77 16 20 C -0.08 -2.02 7.08 71.24 0.50 -1.51 16 21 Cl -0.18 -5.56 28.37 -2.72 -0.08 -5.64 16 22 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.05 1.21 7.66 -2.38 -0.02 1.19 16 24 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 25 H 0.13 4.31 6.27 -2.91 -0.02 4.30 16 26 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 27 H 0.09 4.61 4.79 -2.91 -0.01 4.60 16 28 H 0.29 14.16 8.30 -92.70 -0.77 13.39 16 29 H 0.12 3.58 7.52 -2.39 -0.02 3.56 16 30 H 0.11 3.90 6.86 -2.38 -0.02 3.88 16 31 H 0.16 2.72 8.14 -2.39 -0.02 2.70 16 32 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -67.35 286.77 5.26 -62.09 By element: Atomic # 1 Polarization: 15.01 SS G_CDS: 1.08 Total: 16.10 kcal Atomic # 6 Polarization: -40.79 SS G_CDS: 3.17 Total: -37.62 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.30 Total: -44.72 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.90 Total: -34.29 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.68 Total: 44.07 kcal Atomic # 17 Polarization: -5.56 SS G_CDS: -0.08 Total: -5.64 kcal Total: -67.35 5.26 -62.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060089.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.223 kcal (2) G-P(sol) polarization free energy of solvation -67.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds