Wall clock time and date at job start Mon Mar 30 2020 06:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35644 * 117.00226 * 2 1 4 4 C 1.41359 * 120.26988 * 278.65929 * 3 2 1 5 5 C 1.41154 * 120.28729 * 359.97438 * 4 3 2 6 6 H 1.08003 * 119.99482 * 25.27419 * 5 4 3 7 7 C 1.39934 * 120.00370 * 205.26776 * 5 4 3 8 8 N 1.30863 * 119.99916 * 15.93744 * 7 5 4 9 9 Si 1.86801 * 119.99998 * 195.94109 * 7 5 4 10 10 H 1.48500 * 109.47317 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46999 * 120.00238 * 9 7 5 12 12 H 1.48499 * 109.46943 * 239.99737 * 9 7 5 13 13 C 1.40682 * 119.42415 * 179.97438 * 4 3 2 14 14 C 1.36526 * 119.92920 * 359.97438 * 13 4 3 15 15 C 1.38775 * 120.54058 * 0.02562 * 14 13 4 16 16 C 1.38352 * 120.58714 * 359.74693 * 15 14 13 17 17 C 1.50702 * 119.97271 * 180.27669 * 16 15 14 18 18 H 1.09002 * 109.47260 * 335.70363 * 17 16 15 19 19 Cl 1.80300 * 109.47217 * 215.70209 * 17 16 15 20 20 C 1.50707 * 109.46874 * 95.70389 * 17 16 15 21 21 C 1.50700 * 119.99988 * 277.57215 * 20 17 16 22 22 O 1.20759 * 120.00012 * 97.57927 * 20 17 16 23 23 H 1.09002 * 109.46741 * 70.14786 * 1 2 3 24 24 H 1.09002 * 109.46889 * 190.14659 * 1 2 3 25 25 H 1.08996 * 109.46875 * 310.15324 * 1 2 3 26 26 H 0.96993 * 120.00151 * 179.97438 * 8 7 5 27 27 H 1.08003 * 120.03516 * 180.02562 * 13 4 3 28 28 H 1.08004 * 119.73208 * 179.97438 * 14 13 4 29 29 H 1.07997 * 119.70413 * 180.02562 * 15 14 13 30 30 H 1.09008 * 109.46905 * 90.00058 * 21 20 17 31 31 H 1.08992 * 109.47369 * 210.00377 * 21 20 17 32 32 H 1.08998 * 109.47433 * 330.00917 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.2046 1.9269 -1.2069 5 6 1.7251 1.3925 -2.4223 6 1 0.9114 0.6824 -2.4161 7 6 2.3040 1.7828 -3.6350 8 7 3.4666 2.3835 -3.6417 9 14 1.4171 1.4464 -5.2443 10 1 0.1299 0.7603 -4.9661 11 1 1.1536 2.7306 -5.9420 12 1 2.2633 0.5806 -6.1042 13 6 2.8455 3.1791 -1.1863 14 6 3.3060 3.6893 -0.0067 15 6 3.1480 2.9822 1.1769 16 6 2.5168 1.7510 1.1826 17 6 2.3472 0.9979 2.4769 18 1 3.1108 1.3175 3.1860 19 17 2.5150 -0.7708 2.1695 20 6 0.9814 1.2812 3.0476 21 6 0.7452 2.5349 3.8498 22 8 0.0763 0.5036 2.8622 23 1 -0.3633 0.3490 -0.9666 24 1 -0.3633 -1.0116 0.1810 25 1 -0.3633 0.6627 0.7854 26 1 3.8680 2.6537 -4.4823 27 1 2.9725 3.7365 -2.1026 28 1 3.7980 4.6507 0.0054 29 1 3.5170 3.3987 2.1025 30 1 0.4332 3.3392 3.1834 31 1 -0.0348 2.3520 4.5887 32 1 1.6666 2.8206 4.3572 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396060812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:21 Heat of formation + Delta-G solvation = -58.372097 kcal Electronic energy + Delta-G solvation = -18718.195193 eV Core-core repulsion = 15670.284623 eV Total energy + Delta-G solvation = -3047.910570 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.47656 -38.19380 -35.84089 -35.26560 -33.96911 -31.78549 -29.69355 -29.28200 -26.71487 -25.72246 -24.82210 -21.05664 -20.67300 -19.30197 -17.27516 -16.27145 -15.92995 -15.51904 -15.15587 -14.89798 -14.45981 -14.17541 -13.93602 -13.01272 -12.86305 -12.74668 -12.39752 -12.15952 -11.93440 -11.67944 -11.42831 -11.20797 -10.97112 -10.81002 -10.52669 -10.26093 -10.16124 -9.82954 -9.62733 -9.39794 -9.20044 -8.37066 -7.54668 -7.36026 -6.85206 -4.43289 1.97918 2.55419 2.61031 2.86859 3.03316 3.08578 3.11002 3.87012 4.26577 4.54097 5.00999 5.13574 5.22093 5.37019 5.48427 5.56388 5.64518 6.00053 6.18375 6.31082 6.33095 6.45531 6.51924 6.91080 6.98523 7.15038 7.21566 7.50558 7.67950 7.77117 7.89493 8.07900 8.36846 8.64535 8.73779 9.10502 10.07621 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.024881 B = 0.007176 C = 0.006446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.089128 B = 3901.150319 C = 4343.041582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.306 6.306 3 C 0.005 3.995 4 C 0.090 3.910 5 C -0.439 4.439 6 H 0.084 0.916 7 C 0.074 3.926 8 N -0.789 5.789 9 Si 0.910 3.090 10 H -0.259 1.259 11 H -0.271 1.271 12 H -0.273 1.273 13 C -0.147 4.147 14 C -0.107 4.107 15 C -0.220 4.220 16 C -0.095 4.095 17 C 0.000 4.000 18 H 0.114 0.886 19 Cl -0.133 7.133 20 C 0.355 3.645 21 C -0.195 4.195 22 O -0.433 6.433 23 H 0.033 0.967 24 H 0.069 0.931 25 H 0.035 0.965 26 H 0.282 0.718 27 H 0.123 0.877 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 2.098 8.193 8.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.222 6.222 3 C -0.040 4.040 4 C 0.087 3.913 5 C -0.468 4.468 6 H 0.102 0.898 7 C -0.145 4.145 8 N -0.413 5.413 9 Si 0.734 3.266 10 H -0.183 1.183 11 H -0.197 1.197 12 H -0.198 1.198 13 C -0.166 4.166 14 C -0.126 4.126 15 C -0.240 4.240 16 C -0.096 4.096 17 C -0.044 4.044 18 H 0.132 0.868 19 Cl -0.106 7.106 20 C 0.229 3.771 21 C -0.252 4.252 22 O -0.305 6.305 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.053 0.947 26 H 0.093 0.907 27 H 0.141 0.859 28 H 0.112 0.888 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.103 0.897 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.495 1.436 7.899 8.408 hybrid contribution -0.179 0.138 -0.820 0.850 sum -2.674 1.574 7.080 7.730 Atomic orbital electron populations 1.22785 0.82812 1.00921 0.99140 1.86130 1.17136 1.25026 1.93930 1.18637 1.05389 0.88194 0.91769 1.17953 0.90758 0.90599 0.91991 1.19570 1.15710 1.21638 0.89896 0.89833 1.25951 0.93975 0.93021 1.01506 1.69823 1.12824 1.29414 1.29285 0.86220 0.80696 0.79026 0.80645 1.18287 1.19653 1.19797 1.21094 1.02511 0.95966 0.97038 1.20382 1.00613 0.98501 0.93108 1.19992 1.10538 0.96177 0.97272 1.19134 1.05132 0.95102 0.90201 1.23231 0.98290 0.84351 0.98577 0.86845 1.98723 1.98011 1.17030 1.96846 1.24602 0.88981 0.86671 0.76895 1.22198 1.04129 0.97656 1.01233 1.90392 1.44576 1.46740 1.48756 0.94815 0.91293 0.94670 0.90730 0.85896 0.88836 0.88723 0.88193 0.89666 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.81 10.31 101.05 1.04 1.85 16 2 O -0.31 -7.30 6.75 -18.63 -0.13 -7.43 16 3 C 0.01 0.13 5.52 -38.33 -0.21 -0.09 16 4 C 0.09 2.34 5.58 -106.68 -0.60 1.74 16 5 C -0.44 -11.49 8.59 -37.84 -0.32 -11.81 16 6 H 0.08 2.17 6.02 -52.48 -0.32 1.85 16 7 C 0.07 1.81 5.17 -17.33 -0.09 1.72 16 8 N -0.79 -19.81 10.90 55.55 0.61 -19.21 16 9 Si 0.91 18.51 29.59 -169.99 -5.03 13.48 16 10 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 11 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 12 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 13 C -0.15 -3.60 8.63 -39.28 -0.34 -3.94 16 14 C -0.11 -2.31 9.97 -40.00 -0.40 -2.71 16 15 C -0.22 -4.39 9.67 -39.34 -0.38 -4.77 16 16 C -0.09 -1.99 4.92 -104.52 -0.51 -2.51 16 17 C 0.00 0.00 3.20 -29.03 -0.09 -0.09 16 18 H 0.11 1.64 8.03 -51.93 -0.42 1.23 16 19 Cl -0.13 -2.61 24.98 -51.86 -1.30 -3.91 16 20 C 0.35 5.77 6.30 -29.03 -0.18 5.59 16 21 C -0.19 -2.25 10.25 36.01 0.37 -1.88 16 22 O -0.43 -8.16 14.29 6.00 0.09 -8.08 16 23 H 0.03 0.71 6.63 -51.93 -0.34 0.37 16 24 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 25 H 0.03 0.73 5.75 -51.93 -0.30 0.43 16 26 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 27 H 0.12 3.11 6.14 -52.48 -0.32 2.79 16 28 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 29 H 0.09 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.10 1.16 8.14 -51.92 -0.42 0.73 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 0.77 8.11 -51.93 -0.42 0.35 16 LS Contribution 285.46 15.07 4.30 4.30 Total: -1.00 -28.48 285.46 -6.55 -35.02 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -3.37 Total: 2.71 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -1.72 Total: -16.89 kcal Atomic # 7 Polarization: -19.81 SS G_CDS: 0.61 Total: -19.21 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.04 Total: -15.50 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.48 kcal Atomic # 17 Polarization: -2.61 SS G_CDS: -1.30 Total: -3.91 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -28.48 -6.55 -35.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.351 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds