Wall clock time and date at job start Mon Mar 30 2020 06:43:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35643 * 117.00205 * 2 1 4 4 C 1.41351 * 120.26327 * 87.80114 * 3 2 1 5 5 C 1.41159 * 120.28992 * 0.04769 * 4 3 2 6 6 H 1.07997 * 119.99784 * 327.63892 * 5 4 3 7 7 C 1.39932 * 119.99952 * 147.64169 * 5 4 3 8 8 N 1.30864 * 120.00130 * 345.31758 * 7 5 4 9 9 Si 1.86802 * 119.99909 * 165.32631 * 7 5 4 10 10 H 1.48500 * 109.46997 * 89.99794 * 9 7 5 11 11 H 1.48497 * 109.46879 * 209.99725 * 9 7 5 12 12 H 1.48501 * 109.47017 * 329.99609 * 9 7 5 13 13 C 1.40693 * 119.42340 * 180.02562 * 4 3 2 14 14 C 1.36528 * 119.92711 * 0.02562 * 13 4 3 15 15 C 1.38779 * 120.53696 * 0.02562 * 14 13 4 16 16 C 1.38347 * 120.59312 * 359.95611 * 15 14 13 17 17 C 1.50696 * 119.97411 * 179.74981 * 16 15 14 18 18 H 1.08999 * 109.46972 * 213.92788 * 17 16 15 19 19 Cl 1.80303 * 109.47046 * 333.92590 * 17 16 15 20 20 C 1.50696 * 109.47754 * 93.92681 * 17 16 15 21 21 C 1.50706 * 119.99739 * 274.90154 * 20 17 16 22 22 O 1.20755 * 120.00120 * 94.88678 * 20 17 16 23 23 H 1.08999 * 109.47476 * 65.01522 * 1 2 3 24 24 H 1.09000 * 109.47227 * 185.01684 * 1 2 3 25 25 H 1.08997 * 109.46883 * 305.01885 * 1 2 3 26 26 H 0.97000 * 119.99892 * 179.97438 * 8 7 5 27 27 H 1.07996 * 120.03889 * 179.97438 * 13 4 3 28 28 H 1.07997 * 119.73160 * 180.02562 * 14 13 4 29 29 H 1.07997 * 119.70319 * 179.97438 * 15 14 13 30 30 H 1.08990 * 109.47120 * 359.97438 * 21 20 17 31 31 H 1.09000 * 109.47313 * 119.99859 * 21 20 17 32 32 H 1.09009 * 109.46549 * 239.99410 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 2.3265 1.8646 1.2200 5 6 1.9703 1.2672 2.4483 6 1 1.0894 0.6456 2.5111 7 6 2.7586 1.4805 3.5847 8 7 3.9612 1.9818 3.4621 9 14 2.0944 1.0493 5.2765 10 1 2.4446 -0.3566 5.6022 11 1 2.6930 1.9558 6.2890 12 1 0.6177 1.2060 5.2832 13 6 2.9655 3.1179 1.1993 14 6 3.3067 3.6889 0.0071 15 6 3.0280 3.0433 -1.1894 16 6 2.4009 1.8102 -1.1946 17 6 2.0999 1.1241 -2.5021 18 1 1.1684 0.5651 -2.4131 19 17 1.9374 2.3593 -3.8055 20 6 3.2224 0.1784 -2.8434 21 6 4.4455 0.6886 -3.5611 22 8 3.1421 -0.9881 -2.5417 23 1 -0.3634 0.4340 -0.9315 24 1 -0.3634 -1.0237 0.0899 25 1 -0.3633 0.5897 0.8416 26 1 4.5075 2.1300 4.2499 27 1 3.1851 3.6280 2.1255 28 1 3.7974 4.6509 -0.0050 29 1 3.3035 3.5075 -2.1247 30 1 4.3377 1.7569 -3.7482 31 1 5.3275 0.5145 -2.9447 32 1 4.5557 0.1631 -4.5097 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396060813.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:28 Heat of formation + Delta-G solvation = -69.543162 kcal Electronic energy + Delta-G solvation = -18480.887842 eV Core-core repulsion = 15432.492858 eV Total energy + Delta-G solvation = -3048.394984 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.48028 -38.34119 -36.12714 -35.72790 -33.90161 -31.66422 -29.69374 -29.40311 -26.92373 -25.82568 -24.94525 -21.05002 -20.78183 -19.27818 -17.26187 -16.46542 -15.88108 -15.68858 -15.19935 -14.98113 -14.51146 -14.42146 -13.96479 -13.08597 -12.96973 -12.79746 -12.45931 -12.07063 -11.87049 -11.79881 -11.55171 -11.25642 -11.06775 -10.97951 -10.78018 -10.54363 -10.33645 -10.06369 -9.66218 -9.43390 -9.24990 -8.77904 -7.55939 -7.42390 -6.85878 -4.47196 1.83557 2.54357 2.57344 2.64926 3.02826 3.05934 3.10576 3.87527 4.23500 4.49833 4.83121 5.09781 5.21773 5.42650 5.54124 5.64695 5.76649 5.94109 6.07680 6.13404 6.22630 6.24266 6.44632 6.84140 6.91148 7.08752 7.15713 7.46410 7.67618 7.70377 7.84384 8.01866 8.26900 8.56256 8.71477 8.95333 10.10919 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.025762 B = 0.006493 C = 0.006055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.594035 B = 4311.213653 C = 4623.011186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.318 6.318 3 C -0.006 4.006 4 C 0.101 3.899 5 C -0.448 4.448 6 H 0.081 0.919 7 C 0.076 3.924 8 N -0.794 5.794 9 Si 0.910 3.090 10 H -0.268 1.268 11 H -0.275 1.275 12 H -0.261 1.261 13 C -0.135 4.135 14 C -0.108 4.108 15 C -0.203 4.203 16 C -0.097 4.097 17 C 0.013 3.987 18 H 0.119 0.881 19 Cl -0.167 7.167 20 C 0.370 3.630 21 C -0.202 4.202 22 O -0.437 6.437 23 H 0.026 0.974 24 H 0.076 0.924 25 H 0.043 0.957 26 H 0.282 0.718 27 H 0.116 0.884 28 H 0.096 0.904 29 H 0.106 0.894 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.928 1.271 -7.452 7.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.234 6.234 3 C -0.051 4.051 4 C 0.098 3.902 5 C -0.477 4.477 6 H 0.099 0.901 7 C -0.142 4.142 8 N -0.419 5.419 9 Si 0.734 3.266 10 H -0.193 1.193 11 H -0.200 1.200 12 H -0.185 1.185 13 C -0.155 4.155 14 C -0.126 4.126 15 C -0.222 4.222 16 C -0.098 4.098 17 C -0.031 4.031 18 H 0.137 0.863 19 Cl -0.140 7.140 20 C 0.244 3.756 21 C -0.259 4.259 22 O -0.309 6.309 23 H 0.044 0.956 24 H 0.094 0.906 25 H 0.062 0.938 26 H 0.093 0.907 27 H 0.134 0.866 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.687 0.614 -7.242 7.461 hybrid contribution -0.388 0.203 0.784 0.898 sum -2.075 0.817 -6.458 6.832 Atomic orbital electron populations 1.22841 0.82873 1.01327 0.99283 1.86061 1.17269 1.25950 1.94102 1.18652 1.06903 0.88252 0.91298 1.17824 0.90318 0.90418 0.91668 1.19379 1.09692 1.26204 0.92445 0.90124 1.25887 0.93941 0.93045 1.01333 1.69801 1.06947 1.32858 1.32305 0.86275 0.80387 0.79233 0.80679 1.19342 1.20036 1.18459 1.20970 1.02524 0.95256 0.96711 1.20452 1.00467 0.98801 0.92916 1.20252 1.08602 0.95960 0.97435 1.19125 1.05171 0.95867 0.89662 1.23531 1.01368 0.89959 0.88291 0.86272 1.98674 1.98108 1.61507 1.55716 1.24435 0.88159 0.88128 0.74907 1.22246 0.97588 1.04363 1.01724 1.90437 1.79700 1.18677 1.42050 0.95580 0.90595 0.93827 0.90676 0.86598 0.88578 0.87564 0.89274 0.88772 0.89113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.62 101.05 1.07 1.67 16 2 O -0.32 -7.44 9.04 -18.63 -0.17 -7.61 16 3 C -0.01 -0.15 5.73 -38.34 -0.22 -0.37 16 4 C 0.10 2.59 5.49 -106.68 -0.59 2.00 16 5 C -0.45 -11.61 8.62 -37.84 -0.33 -11.94 16 6 H 0.08 2.05 6.90 -52.49 -0.36 1.68 16 7 C 0.08 1.87 5.15 -17.33 -0.09 1.78 16 8 N -0.79 -20.06 11.32 55.55 0.63 -19.43 16 9 Si 0.91 18.43 29.58 -169.99 -5.03 13.40 16 10 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 11 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 12 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 13 C -0.14 -3.30 8.59 -39.27 -0.34 -3.63 16 14 C -0.11 -2.33 9.97 -40.00 -0.40 -2.73 16 15 C -0.20 -4.16 9.16 -39.34 -0.36 -4.52 16 16 C -0.10 -2.07 5.00 -104.52 -0.52 -2.59 16 17 C 0.01 0.23 3.10 -29.04 -0.09 0.14 16 18 H 0.12 2.17 6.56 -51.93 -0.34 1.83 16 19 Cl -0.17 -2.54 24.97 -51.86 -1.29 -3.84 16 20 C 0.37 6.64 6.37 -29.03 -0.18 6.45 16 21 C -0.20 -2.81 9.96 36.01 0.36 -2.45 16 22 O -0.44 -9.15 17.84 6.00 0.11 -9.04 16 23 H 0.03 0.44 7.29 -51.93 -0.38 0.06 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.04 0.83 7.50 -51.93 -0.39 0.44 16 26 H 0.28 6.49 8.30 -40.82 -0.34 6.15 16 27 H 0.12 2.89 6.65 -52.49 -0.35 2.54 16 28 H 0.10 1.82 8.06 -52.49 -0.42 1.39 16 29 H 0.11 1.93 6.65 -52.49 -0.35 1.58 16 30 H 0.09 1.16 6.60 -51.93 -0.34 0.82 16 31 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.09 1.04 8.14 -51.92 -0.42 0.62 16 LS Contribution 290.76 15.07 4.38 4.38 Total: -1.00 -28.00 290.76 -6.39 -34.39 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -3.34 Total: 3.94 kcal Atomic # 6 Polarization: -14.51 SS G_CDS: -1.68 Total: -16.19 kcal Atomic # 7 Polarization: -20.06 SS G_CDS: 0.63 Total: -19.43 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.06 Total: -16.65 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -1.29 Total: -3.84 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -28.00 -6.39 -34.39 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060813.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.151 kcal (2) G-P(sol) polarization free energy of solvation -27.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds