Wall clock time and date at job start Mon Mar 30 2020 06:37:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35644 * 116.99847 * 2 1 4 4 C 1.38007 * 120.18368 * 0.02562 * 3 2 1 5 5 C 1.40036 * 119.88025 * 179.97438 * 4 3 2 6 6 C 1.46870 * 119.88522 * 179.97438 * 5 4 3 7 7 O 1.21315 * 120.00107 * 186.57154 * 6 5 4 8 8 C 1.50697 * 119.99637 * 6.57280 * 6 5 4 9 9 H 1.08995 * 109.47130 * 163.39222 * 8 6 5 10 10 C 1.52996 * 109.47294 * 283.39672 * 8 6 5 11 11 Cl 1.80301 * 109.47154 * 43.39498 * 8 6 5 12 12 C 1.40482 * 120.23894 * 359.97438 * 5 4 3 13 13 C 1.35980 * 120.37389 * 0.02562 * 12 5 4 14 14 C 1.41011 * 120.11401 * 359.97438 * 13 12 5 15 15 C 1.40685 * 120.11833 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99362 * 161.75834 * 15 14 13 17 17 C 1.40360 * 120.00068 * 341.76645 * 15 14 13 18 18 N 1.30596 * 119.99890 * 318.68581 * 17 15 14 19 19 Si 1.86793 * 120.00020 * 138.69218 * 17 15 14 20 20 H 1.48504 * 109.47552 * 94.99243 * 19 17 15 21 21 H 1.48500 * 109.47316 * 214.99030 * 19 17 15 22 22 H 1.48506 * 109.47424 * 334.98856 * 19 17 15 23 23 H 1.08992 * 109.47135 * 60.00290 * 1 2 3 24 24 H 1.09001 * 109.46473 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47068 * 299.99587 * 1 2 3 26 26 H 1.08004 * 120.06027 * 359.97438 * 4 3 2 27 27 H 1.09003 * 109.47272 * 60.00012 * 10 8 6 28 28 H 1.08995 * 109.47688 * 180.02562 * 10 8 6 29 29 H 1.09000 * 109.47380 * 300.00082 * 10 8 6 30 30 H 1.08001 * 119.81220 * 179.71941 * 12 5 4 31 31 H 1.07998 * 119.94139 * 179.97438 * 13 12 5 32 32 H 0.97002 * 120.00018 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2969 2.3684 0.0005 5 6 1.9392 3.6128 0.0011 6 6 1.1433 4.8471 0.0011 7 8 1.6918 5.9226 -0.1187 8 6 -0.3547 4.7777 0.1499 9 1 -0.7388 5.7609 0.4214 10 6 -0.9788 4.3343 -1.1747 11 17 -0.7761 3.5907 1.4399 12 6 3.3422 3.6848 0.0016 13 6 4.0889 2.5484 0.0011 14 6 3.4581 1.2872 0.0006 15 6 4.2306 0.1115 0.0006 16 1 3.7845 -0.8276 0.2930 17 6 5.5810 0.1590 -0.3792 18 7 5.9475 0.8894 -1.3980 19 14 6.8539 -0.8226 0.5722 20 1 7.0775 -2.1273 -0.1008 21 1 8.1301 -0.0646 0.6188 22 1 6.3664 -1.0563 1.9554 23 1 -0.3633 0.5137 -0.8899 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 0.2181 2.3165 0.0005 27 1 -0.5947 3.3510 -1.4463 28 1 -2.0623 4.2845 -1.0673 29 1 -0.7241 5.0519 -1.9547 30 1 3.8304 4.6481 -0.0026 31 1 5.1670 2.6118 0.0011 32 1 6.8807 0.9219 -1.6607 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396060914.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:26 Heat of formation + Delta-G solvation = -72.721833 kcal Electronic energy + Delta-G solvation = -18281.310863 eV Core-core repulsion = 15232.778042 eV Total energy + Delta-G solvation = -3048.532821 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.14851 -38.09537 -35.96064 -35.82862 -34.02268 -32.33263 -30.25250 -28.81588 -26.62891 -26.14134 -24.14445 -21.76924 -20.64139 -19.07763 -17.82192 -16.64240 -15.78134 -15.33706 -15.05907 -14.67979 -14.40738 -14.13622 -14.05917 -13.74425 -12.87513 -12.69672 -12.35694 -12.27904 -12.01047 -11.62106 -11.45177 -11.33062 -11.20994 -10.92355 -10.77104 -10.58025 -10.43563 -10.05202 -9.91952 -9.58736 -9.21742 -8.62260 -7.82724 -7.43530 -7.08995 -4.50204 1.76781 2.40708 2.77390 2.89237 2.97732 3.04640 3.49650 3.63627 4.24958 4.46195 4.61612 5.02611 5.08375 5.43735 5.62313 5.74466 5.75966 5.82087 5.95745 6.06483 6.21511 6.32346 6.40320 6.62380 6.87872 7.02875 7.15719 7.47499 7.48291 7.85401 7.91105 8.20068 8.30400 8.45603 8.49323 8.91410 9.53540 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.025381 B = 0.006380 C = 0.005533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.926871 B = 4387.807171 C = 5059.770235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.314 6.314 3 C -0.013 4.013 4 C -0.116 4.116 5 C -0.306 4.306 6 C 0.396 3.604 7 O -0.502 6.502 8 C -0.042 4.042 9 H 0.110 0.890 10 C -0.153 4.153 11 Cl -0.162 7.162 12 C -0.033 4.033 13 C -0.205 4.205 14 C 0.124 3.876 15 C -0.412 4.412 16 H 0.100 0.900 17 C 0.087 3.913 18 N -0.721 5.721 19 Si 0.902 3.098 20 H -0.263 1.263 21 H -0.269 1.269 22 H -0.251 1.251 23 H 0.039 0.961 24 H 0.081 0.919 25 H 0.041 0.959 26 H 0.120 0.880 27 H 0.078 0.922 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.108 0.892 32 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.051 -0.172 0.996 7.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.229 6.229 3 C -0.056 4.056 4 C -0.135 4.135 5 C -0.308 4.308 6 C 0.283 3.717 7 O -0.386 6.386 8 C -0.087 4.087 9 H 0.128 0.872 10 C -0.210 4.210 11 Cl -0.136 7.136 12 C -0.051 4.051 13 C -0.224 4.224 14 C 0.120 3.880 15 C -0.436 4.436 16 H 0.118 0.882 17 C -0.142 4.142 18 N -0.340 5.340 19 Si 0.723 3.277 20 H -0.188 1.188 21 H -0.193 1.193 22 H -0.174 1.174 23 H 0.058 0.942 24 H 0.100 0.900 25 H 0.060 0.940 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.126 0.874 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -6.555 0.176 0.839 6.610 hybrid contribution 0.224 -0.274 0.361 0.506 sum -6.330 -0.099 1.200 6.444 Atomic orbital electron populations 1.22731 0.81569 1.01710 1.00084 1.85917 1.18333 1.27993 1.90663 1.18888 0.91899 0.82990 1.11827 1.21331 0.98548 0.91653 1.01989 1.18771 0.93376 0.91580 1.27067 1.21882 0.87777 0.89356 0.72695 1.90450 1.73142 1.32035 1.42924 1.24705 0.98675 0.94552 0.90743 0.87158 1.22080 1.00982 1.03693 0.94256 1.98697 1.94208 1.63687 1.56964 1.20411 0.92408 0.97259 0.95062 1.20352 0.98418 0.90892 1.12748 1.17124 0.87941 0.93577 0.89337 1.19847 0.93453 0.96608 1.33645 0.88242 1.26294 1.00467 0.94486 0.92981 1.69858 1.20484 1.27608 1.16013 0.86384 0.78995 0.80133 0.82147 1.18818 1.19319 1.17369 0.94237 0.90039 0.94029 0.86278 0.90307 0.91038 0.90580 0.88457 0.87371 0.89408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.81 101.05 0.99 1.58 16 2 O -0.31 -6.97 9.70 -18.63 -0.18 -7.15 16 3 C -0.01 -0.30 6.71 -38.41 -0.26 -0.56 16 4 C -0.12 -2.54 6.65 -38.99 -0.26 -2.80 16 5 C -0.31 -7.00 5.72 -104.89 -0.60 -7.60 16 6 C 0.40 8.24 6.15 -30.82 -0.19 8.05 16 7 O -0.50 -11.58 17.08 5.53 0.09 -11.48 16 8 C -0.04 -0.68 3.49 -27.89 -0.10 -0.78 16 9 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 10 C -0.15 -2.07 9.12 37.16 0.34 -1.73 16 11 Cl -0.16 -2.63 24.90 -51.86 -1.29 -3.92 16 12 C -0.03 -0.79 9.51 -39.55 -0.38 -1.17 16 13 C -0.20 -5.14 8.82 -39.34 -0.35 -5.49 16 14 C 0.12 3.16 5.63 -106.66 -0.60 2.56 16 15 C -0.41 -10.19 8.63 -37.86 -0.33 -10.52 16 16 H 0.10 2.43 7.67 -52.49 -0.40 2.03 16 17 C 0.09 1.98 4.54 -17.28 -0.08 1.90 16 18 N -0.72 -16.73 12.18 55.57 0.68 -16.05 16 19 Si 0.90 16.61 29.69 -169.99 -5.05 11.56 16 20 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 21 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 22 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 23 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 24 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 25 H 0.04 0.67 7.66 -51.93 -0.40 0.27 16 26 H 0.12 2.27 2.31 -52.48 -0.12 2.15 16 27 H 0.08 1.16 6.31 -51.93 -0.33 0.83 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 30 H 0.10 2.29 7.63 -52.49 -0.40 1.89 16 31 H 0.11 2.70 6.57 -52.49 -0.34 2.35 16 32 H 0.29 6.00 8.29 -40.82 -0.34 5.66 16 LS Contribution 286.31 15.07 4.31 4.31 Total: -1.00 -27.67 286.31 -6.45 -34.12 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.22 Total: 5.15 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -1.80 Total: -16.55 kcal Atomic # 7 Polarization: -16.73 SS G_CDS: 0.68 Total: -16.05 kcal Atomic # 8 Polarization: -18.54 SS G_CDS: -0.09 Total: -18.63 kcal Atomic # 14 Polarization: 16.61 SS G_CDS: -5.05 Total: 11.56 kcal Atomic # 17 Polarization: -2.63 SS G_CDS: -1.29 Total: -3.92 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -27.67 -6.45 -34.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060914.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.597 kcal (2) G-P(sol) polarization free energy of solvation -27.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds