Wall clock time and date at job start Mon Mar 30 2020 06:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35644 * 117.00205 * 2 1 4 4 C 1.38011 * 120.18089 * 359.96972 * 3 2 1 5 5 C 1.40045 * 119.87620 * 180.02562 * 4 3 2 6 6 C 1.46869 * 119.87908 * 179.97438 * 5 4 3 7 7 O 1.21314 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99810 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.47347 * 35.00389 * 8 6 5 10 10 C 1.52995 * 109.46970 * 275.00006 * 8 6 5 11 11 Cl 1.80298 * 109.46877 * 155.00317 * 8 6 5 12 12 C 1.40477 * 120.24366 * 0.02562 * 5 4 3 13 13 C 1.35989 * 120.36662 * 359.70621 * 12 5 4 14 14 C 1.41006 * 120.11920 * 0.56895 * 13 12 5 15 15 C 1.40678 * 120.12087 * 179.70956 * 14 13 12 16 16 H 1.08004 * 119.99789 * 205.39726 * 15 14 13 17 17 C 1.40362 * 120.00094 * 25.40671 * 15 14 13 18 18 N 1.30591 * 120.00222 * 17.36290 * 17 15 14 19 19 Si 1.86797 * 120.00154 * 197.37046 * 17 15 14 20 20 H 1.48502 * 109.47306 * 265.18751 * 19 17 15 21 21 H 1.48510 * 109.47303 * 25.18140 * 19 17 15 22 22 H 1.48494 * 109.47570 * 145.18233 * 19 17 15 23 23 H 1.09001 * 109.47247 * 300.00566 * 1 2 3 24 24 H 1.08997 * 109.46996 * 60.00360 * 1 2 3 25 25 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.06522 * 0.05091 * 4 3 2 27 27 H 1.08997 * 109.47160 * 60.00361 * 10 8 6 28 28 H 1.09005 * 109.47036 * 180.02562 * 10 8 6 29 29 H 1.09003 * 109.47378 * 299.99889 * 10 8 6 30 30 H 1.07996 * 119.81685 * 180.02562 * 12 5 4 31 31 H 1.08006 * 119.93766 * 180.29877 * 13 12 5 32 32 H 0.96994 * 120.00308 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2968 2.3684 -0.0006 5 6 1.9393 3.6128 -0.0012 6 6 1.1434 4.8472 -0.0024 7 8 -0.0683 4.7876 -0.0025 8 6 1.8320 6.1876 -0.0036 9 1 2.7468 6.1257 -0.5929 10 6 2.1766 6.5851 1.4331 11 17 0.7362 7.4254 -0.7232 12 6 3.3422 3.6848 -0.0016 13 6 4.0889 2.5482 0.0045 14 6 3.4581 1.2872 -0.0008 15 6 4.2305 0.1114 -0.0006 16 1 3.8223 -0.8029 -0.4055 17 6 5.5316 0.1265 0.5258 18 7 5.9081 1.1017 1.3085 19 14 6.7248 -1.2482 0.1066 20 1 6.6827 -2.2822 1.1717 21 1 6.3403 -1.8589 -1.1914 22 1 8.0999 -0.6968 0.0062 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2181 2.3166 -0.0003 27 1 2.8391 5.8368 1.8681 28 1 2.6743 7.5550 1.4323 29 1 1.2617 6.6471 2.0224 30 1 3.8305 4.6481 -0.0016 31 1 5.1671 2.6117 0.0090 32 1 6.8073 1.1124 1.6720 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396060916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:37 Heat of formation + Delta-G solvation = -76.651277 kcal Electronic energy + Delta-G solvation = -17935.166361 eV Core-core repulsion = 14886.463146 eV Total energy + Delta-G solvation = -3048.703215 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -39.21532 -38.16418 -36.10488 -35.63084 -34.01647 -32.31692 -30.21665 -28.94661 -26.63260 -26.32050 -24.01473 -21.77979 -20.76016 -19.04826 -17.79764 -16.75583 -15.84568 -15.37053 -15.01408 -14.74215 -14.54826 -14.14572 -14.10848 -13.37411 -13.02872 -12.57405 -12.33996 -12.11170 -12.09824 -11.67578 -11.47717 -11.38388 -11.30211 -10.96447 -10.74416 -10.52115 -10.24154 -10.06057 -9.99976 -9.92736 -9.49074 -8.78186 -7.76948 -7.36286 -7.09751 -4.61313 1.72913 2.40352 2.80563 2.88073 2.89864 2.95515 3.40748 3.66563 4.32667 4.38736 4.58813 5.08590 5.19162 5.36423 5.70010 5.74933 5.81018 5.81535 5.95208 5.99459 6.12465 6.18820 6.27254 6.57431 6.69385 6.96491 7.11496 7.41025 7.45897 7.66690 7.85446 8.11172 8.31849 8.41060 8.43241 8.80212 9.72863 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.005492 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.954148 B = 5096.753926 C = 6047.513844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.313 6.313 3 C -0.004 4.004 4 C -0.107 4.107 5 C -0.288 4.288 6 C 0.395 3.605 7 O -0.485 6.485 8 C -0.044 4.044 9 H 0.119 0.881 10 C -0.148 4.148 11 Cl -0.175 7.175 12 C -0.069 4.069 13 C -0.168 4.168 14 C 0.123 3.877 15 C -0.409 4.409 16 H 0.093 0.907 17 C 0.070 3.930 18 N -0.762 5.762 19 Si 0.917 3.083 20 H -0.266 1.266 21 H -0.255 1.255 22 H -0.271 1.271 23 H 0.042 0.958 24 H 0.042 0.958 25 H 0.083 0.917 26 H 0.109 0.891 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.097 0.903 31 H 0.127 0.873 32 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.162 3.260 -0.424 3.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.228 6.228 3 C -0.048 4.048 4 C -0.126 4.126 5 C -0.290 4.290 6 C 0.279 3.721 7 O -0.365 6.365 8 C -0.088 4.088 9 H 0.137 0.863 10 C -0.205 4.205 11 Cl -0.148 7.148 12 C -0.088 4.088 13 C -0.188 4.188 14 C 0.119 3.881 15 C -0.436 4.436 16 H 0.111 0.889 17 C -0.152 4.152 18 N -0.385 5.385 19 Si 0.740 3.260 20 H -0.190 1.190 21 H -0.179 1.179 22 H -0.196 1.196 23 H 0.061 0.939 24 H 0.060 0.940 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.103 0.897 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.115 0.885 31 H 0.145 0.855 32 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.565 3.230 -0.320 3.295 hybrid contribution 0.391 -0.212 -0.075 0.451 sum -0.174 3.019 -0.395 3.049 Atomic orbital electron populations 1.22769 0.81238 1.01920 1.00330 1.85934 1.18612 1.27764 1.90493 1.19031 0.92140 0.82911 1.10690 1.20765 0.98094 0.91463 1.02288 1.18925 0.93240 0.91757 1.25112 1.21946 0.88876 0.88692 0.72618 1.90451 1.16168 1.89162 1.40749 1.24678 0.95854 0.89667 0.98617 0.86304 1.21985 1.03092 1.02723 0.92747 1.98697 1.70301 1.59764 1.86083 1.20571 0.92212 0.97444 0.98556 1.20731 0.99700 0.90483 1.07867 1.17260 0.87611 0.94144 0.89119 1.19849 0.96444 0.97246 1.30042 0.88897 1.26198 0.99025 0.97440 0.92582 1.69701 1.19941 1.29782 1.19049 0.86119 0.78699 0.80499 0.80637 1.19050 1.17873 1.19592 0.93929 0.93969 0.89807 0.87330 0.89700 0.91010 0.91324 0.88540 0.85499 0.89879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.01 9.77 -18.63 -0.18 -7.19 16 3 C 0.00 -0.09 6.71 -38.40 -0.26 -0.35 16 4 C -0.11 -2.44 8.57 -38.99 -0.33 -2.77 16 5 C -0.29 -6.26 5.88 -104.88 -0.62 -6.88 16 6 C 0.40 7.97 6.26 -30.82 -0.19 7.78 16 7 O -0.48 -10.96 16.23 5.53 0.09 -10.87 16 8 C -0.04 -0.70 3.02 -27.89 -0.08 -0.79 16 9 H 0.12 1.73 6.71 -51.93 -0.35 1.38 16 10 C -0.15 -2.04 9.30 37.16 0.35 -1.69 16 11 Cl -0.17 -2.86 28.00 -51.86 -1.45 -4.31 16 12 C -0.07 -1.44 9.25 -39.55 -0.37 -1.81 16 13 C -0.17 -3.91 8.61 -39.34 -0.34 -4.25 16 14 C 0.12 3.04 5.58 -106.67 -0.60 2.44 16 15 C -0.41 -9.95 8.70 -37.86 -0.33 -10.28 16 16 H 0.09 2.24 7.66 -52.48 -0.40 1.83 16 17 C 0.07 1.56 5.14 -17.28 -0.09 1.47 16 18 N -0.76 -17.29 10.97 55.57 0.61 -16.68 16 19 Si 0.92 16.62 29.60 -169.99 -5.03 11.58 16 20 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 21 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 22 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 23 H 0.04 0.71 7.66 -51.93 -0.40 0.31 16 24 H 0.04 0.70 7.66 -51.93 -0.40 0.30 16 25 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.11 2.40 5.86 -52.49 -0.31 2.09 16 27 H 0.08 1.17 8.12 -51.93 -0.42 0.75 16 28 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.10 1.69 6.42 -52.49 -0.34 1.36 16 31 H 0.13 2.95 6.18 -52.48 -0.32 2.62 16 32 H 0.29 5.86 8.29 -40.82 -0.34 5.52 16 LS Contribution 291.72 15.07 4.40 4.40 Total: -1.00 -26.98 291.72 -6.78 -33.76 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -3.34 Total: 4.87 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.87 Total: -15.56 kcal Atomic # 7 Polarization: -17.29 SS G_CDS: 0.61 Total: -16.68 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.09 Total: -18.06 kcal Atomic # 14 Polarization: 16.62 SS G_CDS: -5.03 Total: 11.58 kcal Atomic # 17 Polarization: -2.86 SS G_CDS: -1.45 Total: -4.31 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -26.98 -6.78 -33.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.893 kcal (2) G-P(sol) polarization free energy of solvation -26.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds