Wall clock time and date at job start Mon Mar 30 2020 06:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35644 * 117.00205 * 2 1 4 4 C 1.38011 * 120.18089 * 359.96972 * 3 2 1 5 5 C 1.40045 * 119.87620 * 180.02562 * 4 3 2 6 6 C 1.46869 * 119.87908 * 179.97438 * 5 4 3 7 7 O 1.21314 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.50699 * 119.99810 * 180.02562 * 6 5 4 9 9 H 1.08997 * 109.47347 * 35.00389 * 8 6 5 10 10 C 1.52995 * 109.46970 * 275.00006 * 8 6 5 11 11 Cl 1.80298 * 109.46877 * 155.00317 * 8 6 5 12 12 C 1.40477 * 120.24366 * 0.02562 * 5 4 3 13 13 C 1.35989 * 120.36662 * 359.70621 * 12 5 4 14 14 C 1.41006 * 120.11920 * 0.56895 * 13 12 5 15 15 C 1.40678 * 120.12087 * 179.70956 * 14 13 12 16 16 H 1.08004 * 119.99789 * 205.39726 * 15 14 13 17 17 C 1.40362 * 120.00094 * 25.40671 * 15 14 13 18 18 N 1.30591 * 120.00222 * 17.36290 * 17 15 14 19 19 Si 1.86797 * 120.00154 * 197.37046 * 17 15 14 20 20 H 1.48502 * 109.47306 * 265.18751 * 19 17 15 21 21 H 1.48510 * 109.47303 * 25.18140 * 19 17 15 22 22 H 1.48494 * 109.47570 * 145.18233 * 19 17 15 23 23 H 1.09001 * 109.47247 * 300.00566 * 1 2 3 24 24 H 1.08997 * 109.46996 * 60.00360 * 1 2 3 25 25 H 1.08997 * 109.47120 * 180.02562 * 1 2 3 26 26 H 1.08000 * 120.06522 * 0.05091 * 4 3 2 27 27 H 1.08997 * 109.47160 * 60.00361 * 10 8 6 28 28 H 1.09005 * 109.47036 * 180.02562 * 10 8 6 29 29 H 1.09003 * 109.47378 * 299.99889 * 10 8 6 30 30 H 1.07996 * 119.81685 * 180.02562 * 12 5 4 31 31 H 1.08006 * 119.93766 * 180.29877 * 13 12 5 32 32 H 0.96994 * 120.00308 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2086 0.0000 4 6 1.2968 2.3684 -0.0006 5 6 1.9393 3.6128 -0.0012 6 6 1.1434 4.8472 -0.0024 7 8 -0.0683 4.7876 -0.0025 8 6 1.8320 6.1876 -0.0036 9 1 2.7468 6.1257 -0.5929 10 6 2.1766 6.5851 1.4331 11 17 0.7362 7.4254 -0.7232 12 6 3.3422 3.6848 -0.0016 13 6 4.0889 2.5482 0.0045 14 6 3.4581 1.2872 -0.0008 15 6 4.2305 0.1114 -0.0006 16 1 3.8223 -0.8029 -0.4055 17 6 5.5316 0.1265 0.5258 18 7 5.9081 1.1017 1.3085 19 14 6.7248 -1.2482 0.1066 20 1 6.6827 -2.2822 1.1717 21 1 6.3403 -1.8589 -1.1914 22 1 8.0999 -0.6968 0.0062 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 0.2181 2.3166 -0.0003 27 1 2.8391 5.8368 1.8681 28 1 2.6743 7.5550 1.4323 29 1 1.2617 6.6471 2.0224 30 1 3.8305 4.6481 -0.0016 31 1 5.1671 2.6117 0.0090 32 1 6.8073 1.1124 1.6720 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396060916.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:30 Heat of formation + Delta-G solvation = -90.549968 kcal Electronic energy + Delta-G solvation = -17935.769053 eV Core-core repulsion = 14886.463146 eV Total energy + Delta-G solvation = -3049.305907 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.89199 -39.81593 -37.79212 -36.96319 -35.71481 -33.66668 -31.89138 -30.65746 -28.17678 -27.91880 -25.45084 -23.39395 -22.47176 -20.63777 -19.52730 -18.38041 -17.45658 -16.88305 -16.61362 -16.33160 -16.10727 -15.68861 -15.62219 -14.86650 -14.63313 -14.20832 -13.78002 -13.73569 -13.35229 -13.22927 -12.91917 -12.80653 -12.66991 -12.60268 -12.18406 -11.89061 -11.73470 -11.68157 -11.61228 -11.41690 -11.14652 -10.38178 -9.55172 -9.07717 -8.78081 -6.40376 0.05854 1.06013 1.10851 1.36007 1.41664 1.55261 1.80615 2.17071 2.65604 2.81249 3.10414 3.55465 3.89935 3.97165 4.26997 4.34758 4.41462 4.43109 4.55036 4.69279 4.70477 4.79208 4.84447 4.99895 5.11885 5.24292 5.35502 5.67864 5.72428 5.91156 6.10553 6.38000 6.57844 6.66827 6.77852 7.08261 8.10277 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.023564 B = 0.005492 C = 0.004629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.954148 B = 5096.753926 C = 6047.513844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.335 6.335 3 C -0.021 4.021 4 C -0.119 4.119 5 C -0.297 4.297 6 C 0.398 3.602 7 O -0.512 6.512 8 C -0.039 4.039 9 H 0.141 0.859 10 C -0.145 4.145 11 Cl -0.174 7.174 12 C -0.058 4.058 13 C -0.185 4.185 14 C 0.092 3.908 15 C -0.443 4.443 16 H 0.082 0.918 17 C 0.038 3.962 18 N -0.786 5.786 19 Si 0.987 3.013 20 H -0.262 1.262 21 H -0.259 1.259 22 H -0.257 1.257 23 H 0.043 0.957 24 H 0.046 0.954 25 H 0.118 0.882 26 H 0.110 0.890 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.135 0.865 31 H 0.124 0.876 32 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 4.110 -0.353 4.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.250 6.250 3 C -0.065 4.065 4 C -0.139 4.139 5 C -0.300 4.300 6 C 0.283 3.717 7 O -0.394 6.394 8 C -0.083 4.083 9 H 0.159 0.841 10 C -0.202 4.202 11 Cl -0.148 7.148 12 C -0.076 4.076 13 C -0.205 4.205 14 C 0.089 3.911 15 C -0.469 4.469 16 H 0.100 0.900 17 C -0.182 4.182 18 N -0.409 5.409 19 Si 0.806 3.194 20 H -0.187 1.187 21 H -0.183 1.183 22 H -0.180 1.180 23 H 0.062 0.938 24 H 0.064 0.936 25 H 0.136 0.864 26 H 0.128 0.872 27 H 0.104 0.896 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.152 0.848 31 H 0.141 0.859 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.366 4.099 -0.243 4.122 hybrid contribution -0.042 -0.420 -0.084 0.430 sum 0.324 3.679 -0.327 3.707 Atomic orbital electron populations 1.23047 0.78810 1.04303 1.00517 1.85883 1.21179 1.27478 1.90509 1.19227 0.92398 0.83692 1.11160 1.20940 0.98283 0.91988 1.02680 1.19291 0.94023 0.92290 1.24384 1.22286 0.88381 0.89985 0.71093 1.90442 1.17401 1.89836 1.41687 1.24660 0.95680 0.87269 1.00734 0.84085 1.22020 1.03118 1.04378 0.90665 1.98704 1.70578 1.59340 1.86163 1.20845 0.91754 0.98437 0.96593 1.20789 0.99730 0.90827 1.09124 1.17673 0.88386 0.95184 0.89886 1.19970 0.98098 0.96947 1.31885 0.90020 1.26920 0.99681 0.99777 0.91814 1.69694 1.20929 1.31094 1.19168 0.85104 0.76838 0.77458 0.79968 1.18680 1.18312 1.18036 0.93814 0.93584 0.86381 0.87198 0.89564 0.87924 0.91980 0.84764 0.85861 0.88725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 9.81 113.37 1.11 2.09 16 2 O -0.34 -15.38 9.77 -89.58 -0.88 -16.25 16 3 C -0.02 -1.02 6.71 23.03 0.15 -0.86 16 4 C -0.12 -5.54 8.57 22.65 0.19 -5.35 16 5 C -0.30 -12.76 5.88 -20.03 -0.12 -12.88 16 6 C 0.40 15.49 6.26 27.95 0.18 15.67 16 7 O -0.51 -22.75 16.23 -3.13 -0.05 -22.80 16 8 C -0.04 -1.16 3.02 29.85 0.09 -1.07 16 9 H 0.14 3.57 6.71 -2.39 -0.02 3.56 16 10 C -0.14 -3.53 9.30 71.98 0.67 -2.86 16 11 Cl -0.17 -5.30 28.00 -2.72 -0.08 -5.38 16 12 C -0.06 -2.35 9.25 22.29 0.21 -2.14 16 13 C -0.19 -8.64 8.61 22.43 0.19 -8.45 16 14 C 0.09 4.70 5.58 -21.19 -0.12 4.58 16 15 C -0.44 -22.14 8.70 23.38 0.20 -21.94 16 16 H 0.08 4.10 7.66 -2.91 -0.02 4.08 16 17 C 0.04 1.72 5.14 85.39 0.44 2.16 16 18 N -0.79 -35.59 10.97 21.90 0.24 -35.35 16 19 Si 0.99 33.74 29.60 68.60 2.03 35.77 16 20 H -0.26 -8.76 7.11 99.48 0.71 -8.05 16 21 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 22 H -0.26 -8.10 7.11 99.48 0.71 -7.39 16 23 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 24 H 0.05 1.52 7.66 -2.39 -0.02 1.51 16 25 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 26 H 0.11 4.94 5.86 -2.91 -0.02 4.92 16 27 H 0.09 2.12 8.12 -2.39 -0.02 2.10 16 28 H 0.10 1.91 8.14 -2.38 -0.02 1.89 16 29 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.13 4.31 6.42 -2.91 -0.02 4.29 16 31 H 0.12 5.75 6.18 -2.91 -0.02 5.73 16 32 H 0.30 11.96 8.29 -92.71 -0.77 11.19 16 Total: -1.00 -58.91 291.72 5.61 -53.30 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: 1.15 Total: 21.78 kcal Atomic # 6 Polarization: -34.26 SS G_CDS: 3.20 Total: -31.06 kcal Atomic # 7 Polarization: -35.59 SS G_CDS: 0.24 Total: -35.35 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.93 Total: -39.06 kcal Atomic # 14 Polarization: 33.74 SS G_CDS: 2.03 Total: 35.77 kcal Atomic # 17 Polarization: -5.30 SS G_CDS: -0.08 Total: -5.38 kcal Total: -58.91 5.61 -53.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396060916.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.253 kcal (2) G-P(sol) polarization free energy of solvation -58.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds