Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35408 * 116.99992 * 2 1 4 4 C 1.39207 * 119.92217 * 359.73179 * 3 2 1 5 5 C 1.36331 * 120.50236 * 179.71221 * 4 3 2 6 6 C 1.41004 * 120.34099 * 0.56171 * 5 4 3 7 7 C 1.41304 * 120.07945 * 179.74345 * 6 5 4 8 8 H 1.08005 * 119.99471 * 206.25884 * 7 6 5 9 9 C 1.39868 * 120.00229 * 26.25268 * 7 6 5 10 10 N 1.30889 * 119.99878 * 14.20681 * 9 7 6 11 11 Si 1.86798 * 120.00311 * 194.20239 * 9 7 6 12 12 H 1.48498 * 109.47006 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47168 * 120.00189 * 11 9 7 14 14 H 1.48497 * 109.47544 * 240.00332 * 11 9 7 15 15 C 1.40394 * 119.83632 * 359.71718 * 6 5 4 16 16 C 1.39376 * 119.50604 * 359.97438 * 15 6 5 17 17 C 1.46885 * 120.16853 * 180.02562 * 16 15 6 18 18 O 1.21285 * 119.99935 * 283.08141 * 17 16 15 19 19 C 1.50699 * 120.00034 * 103.08320 * 17 16 15 20 20 H 1.08995 * 109.47200 * 152.66922 * 19 17 16 21 21 C 1.53003 * 109.46849 * 272.66307 * 19 17 16 22 22 Cl 1.80293 * 109.47033 * 32.66313 * 19 17 16 23 23 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47256 * 299.99338 * 1 2 3 25 25 H 1.08995 * 109.47326 * 59.99626 * 1 2 3 26 26 H 1.07994 * 119.74833 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.82871 * 180.25524 * 5 4 3 28 28 H 0.96998 * 120.00129 * 180.02562 * 10 9 7 29 29 H 1.08003 * 120.24569 * 180.02562 * 15 6 5 30 30 H 1.09008 * 109.46859 * 60.00664 * 21 19 17 31 31 H 1.08999 * 109.46746 * 179.97438 * 21 19 17 32 32 H 1.08992 * 109.47513 * 300.00446 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 6 1.2840 2.3730 -0.0056 5 6 1.8905 3.5939 0.0002 6 6 3.2973 3.6904 0.0001 7 6 3.9202 4.9587 0.0007 8 1 4.9111 5.0737 -0.4132 9 6 3.2535 6.0651 0.5371 10 7 2.1902 5.8913 1.2803 11 14 3.8805 7.7907 0.1929 12 1 5.0883 7.7159 -0.6678 13 1 2.8255 8.5712 -0.5021 14 1 4.2258 8.4567 1.4744 15 6 4.0775 2.5231 0.0000 16 6 3.4505 1.2784 0.0005 17 6 4.2525 0.0478 0.0010 18 8 4.7828 -0.3308 -1.0220 19 6 4.4165 -0.7442 1.2725 20 1 4.5893 -1.7922 1.0280 21 6 5.6099 -0.2012 2.0612 22 17 2.9210 -0.5980 2.2687 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.2059 2.3102 -0.0104 27 1 1.2905 4.4919 -0.0001 28 1 1.7276 6.6585 1.6521 29 1 5.1555 2.5893 0.0003 30 1 5.4370 0.8470 2.3058 31 1 5.7282 -0.7738 2.9811 32 1 6.5140 -0.2894 1.4590 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396062435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -67.040682 kcal Electronic energy + Delta-G solvation = -18319.460573 eV Core-core repulsion = 15271.174104 eV Total energy + Delta-G solvation = -3048.286468 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -39.50753 -38.20608 -36.31886 -35.68683 -33.38628 -32.22638 -30.03409 -29.50025 -26.88241 -25.12250 -24.46109 -22.06643 -20.64674 -19.33858 -17.25736 -16.90538 -15.76597 -15.73718 -15.24102 -14.86840 -14.77062 -14.03987 -13.90443 -13.23137 -13.03113 -12.74796 -12.26929 -12.14164 -11.93265 -11.60567 -11.45548 -11.25184 -11.16222 -11.06821 -10.73321 -10.48083 -10.18573 -10.10308 -9.85927 -9.70397 -9.10279 -8.94177 -7.75676 -7.09415 -6.76165 -4.33949 2.02165 2.54174 2.70006 2.78819 3.06778 3.11512 3.13395 3.92118 4.23179 4.33098 4.54392 4.97851 4.98991 5.50377 5.58718 5.63429 5.71324 5.74720 5.86337 5.92272 6.07378 6.20140 6.50149 6.69432 6.92780 7.11125 7.17926 7.31574 7.68683 7.79947 7.87099 7.98286 8.32371 8.53352 8.81994 8.85792 10.18831 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.006535 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.436358 B = 4283.462276 C = 4806.552912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.321 6.321 3 C 0.055 3.945 4 C -0.184 4.184 5 C -0.102 4.102 6 C 0.084 3.916 7 C -0.462 4.462 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.805 5.805 11 Si 0.909 3.091 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.275 1.275 15 C -0.161 4.161 16 C -0.159 4.159 17 C 0.433 3.567 18 O -0.454 6.454 19 C -0.049 4.049 20 H 0.114 0.886 21 C -0.151 4.151 22 Cl -0.139 7.139 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.102 0.898 27 H 0.127 0.873 28 H 0.279 0.721 29 H 0.103 0.897 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 -7.360 2.212 7.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.236 6.236 3 C 0.011 3.989 4 C -0.203 4.203 5 C -0.122 4.122 6 C 0.082 3.918 7 C -0.492 4.492 8 H 0.096 0.904 9 C -0.142 4.142 10 N -0.432 5.432 11 Si 0.733 3.267 12 H -0.185 1.185 13 H -0.198 1.198 14 H -0.200 1.200 15 C -0.181 4.181 16 C -0.161 4.161 17 C 0.308 3.692 18 O -0.327 6.327 19 C -0.094 4.094 20 H 0.132 0.868 21 C -0.208 4.208 22 Cl -0.113 7.113 23 H 0.101 0.899 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.120 0.880 27 H 0.145 0.855 28 H 0.090 0.910 29 H 0.121 0.879 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.164 -7.599 1.882 7.830 hybrid contribution -0.242 1.010 0.142 1.048 sum -0.406 -6.589 2.023 6.904 Atomic orbital electron populations 1.22722 0.80603 1.01868 1.00469 1.85831 1.19439 1.27983 1.90342 1.18305 0.89747 0.83556 1.07314 1.20560 0.97876 0.92836 1.09027 1.21157 0.95360 0.95870 0.99767 1.17429 0.91512 0.92177 0.90667 1.19472 1.02696 0.91888 1.35171 0.90386 1.25843 0.94262 1.01415 0.92709 1.69801 1.16772 1.32856 1.23767 0.86250 0.79898 0.81452 0.79063 1.18469 1.19822 1.20046 1.20804 0.97698 0.89747 1.09868 1.18852 0.90610 0.93488 1.13121 1.22433 0.75458 0.83983 0.87318 1.90508 1.40285 1.67874 1.34030 1.24562 0.88779 1.02646 0.93428 0.86786 1.22002 0.95063 1.03648 1.00132 1.98737 1.41231 1.98772 1.72528 0.89944 0.93681 0.93838 0.87998 0.85527 0.90999 0.87880 0.89988 0.90569 0.90732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.80 101.05 0.99 1.59 16 2 O -0.32 -6.29 8.02 -17.92 -0.14 -6.43 16 3 C 0.06 1.21 5.79 -38.23 -0.22 0.99 16 4 C -0.18 -4.13 8.95 -39.91 -0.36 -4.48 16 5 C -0.10 -2.53 8.60 -39.22 -0.34 -2.87 16 6 C 0.08 2.16 5.56 -106.87 -0.59 1.56 16 7 C -0.46 -11.83 9.04 -37.81 -0.34 -12.17 16 8 H 0.08 1.94 7.88 -52.48 -0.41 1.52 16 9 C 0.07 1.79 5.20 -17.34 -0.09 1.70 16 10 N -0.81 -20.10 10.84 55.54 0.60 -19.50 16 11 Si 0.91 18.30 29.58 -169.99 -5.03 13.28 16 12 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 13 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 14 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 15 C -0.16 -3.84 9.54 -38.35 -0.37 -4.21 16 16 C -0.16 -3.57 4.97 -104.98 -0.52 -4.09 16 17 C 0.43 8.67 5.30 -30.81 -0.16 8.51 16 18 O -0.45 -9.91 17.86 5.55 0.10 -9.81 16 19 C -0.05 -0.79 3.76 -27.88 -0.10 -0.89 16 20 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 21 C -0.15 -2.03 9.30 37.16 0.35 -1.68 16 22 Cl -0.14 -2.36 24.99 -51.86 -1.30 -3.66 16 23 H 0.08 1.03 8.14 -51.93 -0.42 0.60 16 24 H 0.04 0.68 7.66 -51.93 -0.40 0.28 16 25 H 0.04 0.64 7.63 -51.93 -0.40 0.24 16 26 H 0.10 2.02 6.25 -52.49 -0.33 1.69 16 27 H 0.13 3.23 6.12 -52.48 -0.32 2.90 16 28 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 29 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 30 H 0.08 1.22 8.14 -51.92 -0.42 0.80 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 291.03 15.07 4.39 4.39 Total: -1.00 -28.00 291.03 -6.67 -34.67 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.53 Total: 3.10 kcal Atomic # 6 Polarization: -14.27 SS G_CDS: -1.76 Total: -16.04 kcal Atomic # 7 Polarization: -20.10 SS G_CDS: 0.60 Total: -19.50 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.04 Total: -16.24 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.28 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -1.30 Total: -3.66 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -28.00 -6.67 -34.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396062435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.366 kcal (2) G-P(sol) polarization free energy of solvation -28.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds