Wall clock time and date at job start Mon Mar 30 2020 06:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35408 * 116.99992 * 2 1 4 4 C 1.39207 * 119.92217 * 359.73179 * 3 2 1 5 5 C 1.36331 * 120.50236 * 179.71221 * 4 3 2 6 6 C 1.41004 * 120.34099 * 0.56171 * 5 4 3 7 7 C 1.41304 * 120.07945 * 179.74345 * 6 5 4 8 8 H 1.08005 * 119.99471 * 206.25884 * 7 6 5 9 9 C 1.39868 * 120.00229 * 26.25268 * 7 6 5 10 10 N 1.30889 * 119.99878 * 14.20681 * 9 7 6 11 11 Si 1.86798 * 120.00311 * 194.20239 * 9 7 6 12 12 H 1.48498 * 109.47006 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47168 * 120.00189 * 11 9 7 14 14 H 1.48497 * 109.47544 * 240.00332 * 11 9 7 15 15 C 1.40394 * 119.83632 * 359.71718 * 6 5 4 16 16 C 1.39376 * 119.50604 * 359.97438 * 15 6 5 17 17 C 1.46885 * 120.16853 * 180.02562 * 16 15 6 18 18 O 1.21285 * 119.99935 * 283.08141 * 17 16 15 19 19 C 1.50699 * 120.00034 * 103.08320 * 17 16 15 20 20 H 1.08995 * 109.47200 * 152.66922 * 19 17 16 21 21 C 1.53003 * 109.46849 * 272.66307 * 19 17 16 22 22 Cl 1.80293 * 109.47033 * 32.66313 * 19 17 16 23 23 H 1.09003 * 109.47396 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47256 * 299.99338 * 1 2 3 25 25 H 1.08995 * 109.47326 * 59.99626 * 1 2 3 26 26 H 1.07994 * 119.74833 * 359.97438 * 4 3 2 27 27 H 1.08004 * 119.82871 * 180.25524 * 5 4 3 28 28 H 0.96998 * 120.00129 * 180.02562 * 10 9 7 29 29 H 1.08003 * 120.24569 * 180.02562 * 15 6 5 30 30 H 1.09008 * 109.46859 * 60.00664 * 21 19 17 31 31 H 1.08999 * 109.46746 * 179.97438 * 21 19 17 32 32 H 1.08992 * 109.47513 * 300.00446 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 6 1.2840 2.3730 -0.0056 5 6 1.8905 3.5939 0.0002 6 6 3.2973 3.6904 0.0001 7 6 3.9202 4.9587 0.0007 8 1 4.9111 5.0737 -0.4132 9 6 3.2535 6.0651 0.5371 10 7 2.1902 5.8913 1.2803 11 14 3.8805 7.7907 0.1929 12 1 5.0883 7.7159 -0.6678 13 1 2.8255 8.5712 -0.5021 14 1 4.2258 8.4567 1.4744 15 6 4.0775 2.5231 0.0000 16 6 3.4505 1.2784 0.0005 17 6 4.2525 0.0478 0.0010 18 8 4.7828 -0.3308 -1.0220 19 6 4.4165 -0.7442 1.2725 20 1 4.5893 -1.7922 1.0280 21 6 5.6099 -0.2012 2.0612 22 17 2.9210 -0.5980 2.2687 23 1 -0.3634 -1.0277 0.0005 24 1 -0.3634 0.5137 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 0.2059 2.3102 -0.0104 27 1 1.2905 4.4919 -0.0001 28 1 1.7276 6.6585 1.6521 29 1 5.1555 2.5893 0.0003 30 1 5.4370 0.8470 2.3058 31 1 5.7282 -0.7738 2.9811 32 1 6.5140 -0.2894 1.4590 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396062435.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:41 Heat of formation + Delta-G solvation = -81.825626 kcal Electronic energy + Delta-G solvation = -18320.101696 eV Core-core repulsion = 15271.174104 eV Total energy + Delta-G solvation = -3048.927592 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.15360 -39.81580 -38.05114 -37.01468 -35.18882 -33.54403 -31.73717 -31.30009 -28.32042 -26.72203 -26.04277 -23.66199 -22.39851 -20.98279 -19.00421 -18.55466 -17.42592 -17.19855 -16.87087 -16.53898 -16.21551 -15.46732 -15.40164 -14.92177 -14.66356 -14.28101 -13.74827 -13.64699 -13.37532 -13.24592 -12.86550 -12.77736 -12.72072 -12.61128 -12.30770 -12.01304 -11.80596 -11.53627 -11.47885 -11.32230 -10.87773 -10.53221 -9.57957 -8.90433 -8.57536 -6.24744 0.45729 0.83046 0.93309 1.35640 1.41451 1.49676 1.55315 2.24001 2.67134 2.73696 2.87888 3.62440 3.72770 3.78780 4.23028 4.28826 4.46915 4.50135 4.65721 4.70178 4.75709 4.79040 4.88415 5.09172 5.12407 5.31799 5.34205 5.48563 5.86503 6.00333 6.12182 6.19671 6.52405 6.74955 6.94781 7.01961 8.39273 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.006535 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.436358 B = 4283.462276 C = 4806.552912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.326 6.326 3 C 0.065 3.935 4 C -0.186 4.186 5 C -0.121 4.121 6 C 0.055 3.945 7 C -0.497 4.497 8 H 0.073 0.927 9 C 0.036 3.964 10 N -0.833 5.833 11 Si 0.979 3.021 12 H -0.261 1.261 13 H -0.266 1.266 14 H -0.267 1.267 15 C -0.172 4.172 16 C -0.172 4.172 17 C 0.433 3.567 18 O -0.476 6.476 19 C -0.042 4.042 20 H 0.143 0.857 21 C -0.148 4.148 22 Cl -0.148 7.148 23 H 0.117 0.883 24 H 0.048 0.952 25 H 0.050 0.950 26 H 0.127 0.873 27 H 0.114 0.886 28 H 0.287 0.713 29 H 0.105 0.895 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -8.321 2.652 8.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.241 6.241 3 C 0.020 3.980 4 C -0.205 4.205 5 C -0.141 4.141 6 C 0.053 3.947 7 C -0.527 4.527 8 H 0.091 0.909 9 C -0.177 4.177 10 N -0.461 5.461 11 Si 0.800 3.200 12 H -0.185 1.185 13 H -0.190 1.190 14 H -0.192 1.192 15 C -0.191 4.191 16 C -0.174 4.174 17 C 0.310 3.690 18 O -0.351 6.351 19 C -0.086 4.086 20 H 0.161 0.839 21 C -0.205 4.205 22 Cl -0.122 7.122 23 H 0.135 0.865 24 H 0.067 0.933 25 H 0.069 0.931 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.097 0.903 29 H 0.123 0.877 30 H 0.081 0.919 31 H 0.125 0.875 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.291 -8.580 2.331 8.895 hybrid contribution -0.295 1.159 -0.005 1.196 sum -0.587 -7.421 2.325 7.799 Atomic orbital electron populations 1.23072 0.78138 1.04409 1.00995 1.85833 1.21911 1.26457 1.89881 1.18392 0.89847 0.84320 1.05438 1.20790 0.99266 0.92241 1.08203 1.21114 0.95157 0.96382 1.01419 1.17728 0.92270 0.92935 0.91730 1.19674 1.03120 0.93043 1.36897 0.90875 1.26609 0.94322 1.04875 0.91933 1.69847 1.17721 1.34265 1.24253 0.85198 0.79280 0.76460 0.79024 1.18497 1.19043 1.19212 1.20907 0.97879 0.90208 1.10152 1.19197 0.91547 0.94252 1.12363 1.22704 0.74317 0.83379 0.88629 1.90499 1.41026 1.68318 1.35267 1.24626 0.89126 1.03463 0.91388 0.83914 1.22050 0.94317 1.02813 1.01334 1.98739 1.42100 1.98815 1.72517 0.86522 0.93291 0.93092 0.85569 0.86849 0.90285 0.87685 0.91899 0.87520 0.89371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.80 113.37 1.11 1.91 16 2 O -0.33 -12.13 8.02 -87.02 -0.70 -12.83 16 3 C 0.07 2.82 5.79 23.14 0.13 2.95 16 4 C -0.19 -8.32 8.95 22.06 0.20 -8.12 16 5 C -0.12 -6.16 8.60 22.50 0.19 -5.97 16 6 C 0.06 2.93 5.56 -21.32 -0.12 2.81 16 7 C -0.50 -26.33 9.04 23.42 0.21 -26.12 16 8 H 0.07 3.78 7.88 -2.91 -0.02 3.76 16 9 C 0.04 1.77 5.20 85.23 0.44 2.22 16 10 N -0.83 -42.40 10.84 21.82 0.24 -42.17 16 11 Si 0.98 37.84 29.58 68.60 2.03 39.87 16 12 H -0.26 -9.99 7.11 99.48 0.71 -9.28 16 13 H -0.27 -9.88 7.11 99.48 0.71 -9.17 16 14 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 15 C -0.17 -8.38 9.54 23.07 0.22 -8.16 16 16 C -0.17 -7.70 4.97 -20.10 -0.10 -7.80 16 17 C 0.43 16.90 5.30 27.95 0.15 17.05 16 18 O -0.48 -20.39 17.86 -3.05 -0.05 -20.44 16 19 C -0.04 -1.23 3.76 29.85 0.11 -1.12 16 20 H 0.14 3.48 8.14 -2.39 -0.02 3.47 16 21 C -0.15 -3.64 9.30 71.98 0.67 -2.97 16 22 Cl -0.15 -4.74 24.99 -2.72 -0.07 -4.81 16 23 H 0.12 2.48 8.14 -2.39 -0.02 2.46 16 24 H 0.05 1.35 7.66 -2.39 -0.02 1.33 16 25 H 0.05 1.36 7.63 -2.39 -0.02 1.34 16 26 H 0.13 4.87 6.25 -2.91 -0.02 4.85 16 27 H 0.11 5.98 6.12 -2.91 -0.02 5.96 16 28 H 0.29 13.19 8.30 -92.71 -0.77 12.42 16 29 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 30 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -61.01 291.03 5.80 -55.21 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 1.14 Total: 18.49 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 3.22 Total: -33.32 kcal Atomic # 7 Polarization: -42.40 SS G_CDS: 0.24 Total: -42.17 kcal Atomic # 8 Polarization: -32.52 SS G_CDS: -0.75 Total: -33.27 kcal Atomic # 14 Polarization: 37.84 SS G_CDS: 2.03 Total: 39.87 kcal Atomic # 17 Polarization: -4.74 SS G_CDS: -0.07 Total: -4.81 kcal Total: -61.01 5.80 -55.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396062435.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.621 kcal (2) G-P(sol) polarization free energy of solvation -61.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds