Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35401 * 116.99498 * 2 1 4 4 C 1.39211 * 119.93029 * 359.72382 * 3 2 1 5 5 C 1.36325 * 120.50879 * 179.71956 * 4 3 2 6 6 C 1.41003 * 120.34009 * 0.55412 * 5 4 3 7 7 C 1.41300 * 120.08331 * 179.74610 * 6 5 4 8 8 H 1.07999 * 120.00351 * 204.71956 * 7 6 5 9 9 C 1.39868 * 119.99831 * 24.71194 * 7 6 5 10 10 N 1.30892 * 120.00286 * 18.00175 * 9 7 6 11 11 Si 1.86806 * 120.00285 * 197.99540 * 9 7 6 12 12 H 1.48496 * 109.46920 * 89.99986 * 11 9 7 13 13 H 1.48492 * 109.47447 * 210.00345 * 11 9 7 14 14 H 1.48505 * 109.46985 * 330.00490 * 11 9 7 15 15 C 1.40396 * 119.84122 * 359.72186 * 6 5 4 16 16 C 1.39383 * 119.49963 * 0.02562 * 15 6 5 17 17 C 1.46886 * 120.16954 * 180.02562 * 16 15 6 18 18 O 1.21286 * 120.00370 * 179.97438 * 17 16 15 19 19 C 1.50709 * 119.99913 * 359.97438 * 17 16 15 20 20 H 1.09003 * 109.47054 * 34.99755 * 19 17 16 21 21 C 1.53003 * 109.46769 * 275.00343 * 19 17 16 22 22 Cl 1.80295 * 109.47284 * 155.00141 * 19 17 16 23 23 H 1.09008 * 109.46610 * 180.02562 * 1 2 3 24 24 H 1.08988 * 109.47418 * 300.00141 * 1 2 3 25 25 H 1.09001 * 109.46457 * 60.00747 * 1 2 3 26 26 H 1.07997 * 119.74391 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.82915 * 180.25887 * 5 4 3 28 28 H 0.96995 * 120.00253 * 179.97438 * 10 9 7 29 29 H 1.07995 * 120.25453 * 180.02562 * 15 6 5 30 30 H 1.08993 * 109.47611 * 59.99835 * 21 19 17 31 31 H 1.08998 * 109.47010 * 180.02562 * 21 19 17 32 32 H 1.09003 * 109.46852 * 299.99536 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 6 1.2840 2.3730 -0.0058 5 6 1.8904 3.5939 -0.0001 6 6 3.2972 3.6904 0.0000 7 6 3.9201 4.9587 0.0004 8 1 4.9207 5.0691 -0.3906 9 6 3.2407 6.0713 0.5072 10 7 2.2031 5.9051 1.2876 11 14 3.8141 7.7947 0.0705 12 1 3.1249 8.2475 -1.1645 13 1 3.4917 8.7211 1.1853 14 1 5.2816 7.7854 -0.1567 15 6 4.0775 2.5233 0.0001 16 6 3.4505 1.2785 -0.0004 17 6 4.2526 0.0479 0.0002 18 8 3.7038 -1.0337 0.0003 19 6 5.7575 0.1294 0.0009 20 1 6.0745 0.9898 0.5903 21 6 6.2605 0.2822 -1.4359 22 17 6.4405 -1.3763 0.7200 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 0.2058 2.3103 -0.0107 27 1 1.2903 4.4919 -0.0005 28 1 1.7322 6.6766 1.6394 29 1 5.1554 2.5895 0.0006 30 1 5.8476 1.1924 -1.8707 31 1 7.3489 0.3406 -1.4355 32 1 5.9435 -0.5782 -2.0253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396062437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = -71.897281 kcal Electronic energy + Delta-G solvation = -18063.031012 eV Core-core repulsion = 15014.533946 eV Total energy + Delta-G solvation = -3048.497066 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.52120 -38.02141 -36.48765 -35.66226 -33.54964 -32.42346 -29.97846 -29.59502 -26.96894 -24.90489 -24.59637 -22.23910 -20.64100 -19.23233 -17.44006 -17.03012 -15.76351 -15.47512 -15.05868 -14.97115 -14.51484 -14.33494 -13.91608 -13.35586 -12.89166 -12.67292 -12.40871 -12.14853 -12.05301 -11.56695 -11.46891 -11.29557 -11.24838 -11.15037 -10.72460 -10.56125 -10.28758 -10.19941 -10.07083 -9.82593 -9.18367 -8.82757 -7.94456 -7.28086 -6.89702 -4.44709 1.69573 2.37621 2.58506 2.99518 3.02535 3.03393 3.39225 3.83491 4.17814 4.39707 4.43477 5.05813 5.20209 5.39039 5.58494 5.66347 5.67203 5.79301 5.81550 5.93746 5.98721 6.15713 6.31394 6.53052 6.77650 6.92272 7.06195 7.17265 7.52871 7.71556 7.80283 8.20196 8.22992 8.40698 8.68815 8.72440 10.06006 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.006339 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.958062 B = 4415.856905 C = 5678.484099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.302 6.302 3 C 0.072 3.928 4 C -0.197 4.197 5 C -0.084 4.084 6 C 0.076 3.924 7 C -0.464 4.464 8 H 0.081 0.919 9 C 0.075 3.925 10 N -0.801 5.801 11 Si 0.909 3.091 12 H -0.268 1.268 13 H -0.278 1.278 14 H -0.262 1.262 15 C -0.165 4.165 16 C -0.170 4.170 17 C 0.393 3.607 18 O -0.435 6.435 19 C -0.046 4.046 20 H 0.125 0.875 21 C -0.149 4.149 22 Cl -0.170 7.170 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.106 0.894 27 H 0.128 0.872 28 H 0.282 0.718 29 H 0.110 0.890 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.904 -3.573 -2.886 4.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.216 6.216 3 C 0.026 3.974 4 C -0.216 4.216 5 C -0.104 4.104 6 C 0.074 3.926 7 C -0.493 4.493 8 H 0.099 0.901 9 C -0.142 4.142 10 N -0.428 5.428 11 Si 0.734 3.266 12 H -0.193 1.193 13 H -0.203 1.203 14 H -0.185 1.185 15 C -0.185 4.185 16 C -0.172 4.172 17 C 0.270 3.730 18 O -0.309 6.309 19 C -0.091 4.091 20 H 0.143 0.857 21 C -0.206 4.206 22 Cl -0.144 7.144 23 H 0.104 0.896 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.124 0.876 27 H 0.145 0.855 28 H 0.093 0.907 29 H 0.128 0.872 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 1.587 -4.324 -2.684 5.331 hybrid contribution -0.042 1.169 0.055 1.171 sum 1.545 -3.155 -2.629 4.388 Atomic orbital electron populations 1.22840 0.80833 1.02252 1.00456 1.86067 1.19059 1.27240 1.89230 1.18819 0.90659 0.83737 1.04187 1.20671 0.98254 0.92817 1.09841 1.21257 0.95516 0.95884 0.97723 1.17499 0.91455 0.92546 0.91149 1.19445 1.01976 0.91548 1.36376 0.90117 1.25873 0.94160 1.01693 0.92450 1.69796 1.17244 1.33265 1.22451 0.86287 0.80330 0.80984 0.79028 1.19285 1.20333 1.18549 1.21110 0.97953 0.90315 1.09082 1.19123 0.90145 0.93559 1.14371 1.22143 0.88657 0.89288 0.72866 1.90528 1.74042 1.30681 1.35667 1.24687 0.95954 0.89355 0.99063 0.85716 1.21989 1.02125 1.03996 0.92464 1.98703 1.86540 1.43081 1.86068 0.89607 0.93621 0.93707 0.87637 0.85472 0.90704 0.87186 0.89576 0.90743 0.91297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 9.80 101.05 0.99 1.50 16 2 O -0.30 -6.43 8.54 -39.85 -0.34 -6.77 16 3 C 0.07 1.60 6.73 -38.23 -0.26 1.34 16 4 C -0.20 -4.30 8.95 -39.91 -0.36 -4.66 16 5 C -0.08 -2.00 8.62 -39.22 -0.34 -2.33 16 6 C 0.08 1.82 5.57 -106.87 -0.59 1.23 16 7 C -0.46 -11.13 9.03 -37.81 -0.34 -11.48 16 8 H 0.08 1.84 7.91 -52.49 -0.41 1.43 16 9 C 0.08 1.74 5.13 -17.34 -0.09 1.65 16 10 N -0.80 -19.27 10.97 55.54 0.61 -18.66 16 11 Si 0.91 17.40 29.60 -169.99 -5.03 12.37 16 12 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 13 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 14 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 15 C -0.16 -3.57 9.10 -38.34 -0.35 -3.92 16 16 C -0.17 -3.71 5.88 -104.98 -0.62 -4.32 16 17 C 0.39 7.90 6.27 -30.81 -0.19 7.71 16 18 O -0.43 -9.75 15.07 -16.40 -0.25 -10.00 16 19 C -0.05 -0.74 3.03 -27.88 -0.08 -0.83 16 20 H 0.12 1.86 6.74 -51.93 -0.35 1.51 16 21 C -0.15 -1.99 9.30 37.16 0.35 -1.64 16 22 Cl -0.17 -2.77 28.00 -51.86 -1.45 -4.22 16 23 H 0.09 1.14 8.14 -51.92 -0.42 0.72 16 24 H 0.05 0.69 7.66 -51.94 -0.40 0.29 16 25 H 0.04 0.66 7.63 -51.93 -0.40 0.26 16 26 H 0.11 2.03 6.25 -52.49 -0.33 1.70 16 27 H 0.13 3.08 6.15 -52.49 -0.32 2.76 16 28 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 29 H 0.11 2.10 6.47 -52.49 -0.34 1.76 16 30 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 290.56 15.07 4.38 4.38 Total: -1.00 -27.48 290.56 -7.34 -34.82 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -3.37 Total: 3.83 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -1.89 Total: -15.75 kcal Atomic # 7 Polarization: -19.27 SS G_CDS: 0.61 Total: -18.66 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.59 Total: -16.77 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.03 Total: 12.37 kcal Atomic # 17 Polarization: -2.77 SS G_CDS: -1.45 Total: -4.22 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.48 -7.34 -34.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396062437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.075 kcal (2) G-P(sol) polarization free energy of solvation -27.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds