Wall clock time and date at job start Mon Mar 30 2020 06:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35401 * 116.99498 * 2 1 4 4 C 1.39211 * 119.93029 * 359.72382 * 3 2 1 5 5 C 1.36325 * 120.50879 * 179.71956 * 4 3 2 6 6 C 1.41003 * 120.34009 * 0.55412 * 5 4 3 7 7 C 1.41300 * 120.08331 * 179.74610 * 6 5 4 8 8 H 1.07999 * 120.00351 * 204.71956 * 7 6 5 9 9 C 1.39868 * 119.99831 * 24.71194 * 7 6 5 10 10 N 1.30892 * 120.00286 * 18.00175 * 9 7 6 11 11 Si 1.86806 * 120.00285 * 197.99540 * 9 7 6 12 12 H 1.48496 * 109.46920 * 89.99986 * 11 9 7 13 13 H 1.48492 * 109.47447 * 210.00345 * 11 9 7 14 14 H 1.48505 * 109.46985 * 330.00490 * 11 9 7 15 15 C 1.40396 * 119.84122 * 359.72186 * 6 5 4 16 16 C 1.39383 * 119.49963 * 0.02562 * 15 6 5 17 17 C 1.46886 * 120.16954 * 180.02562 * 16 15 6 18 18 O 1.21286 * 120.00370 * 179.97438 * 17 16 15 19 19 C 1.50709 * 119.99913 * 359.97438 * 17 16 15 20 20 H 1.09003 * 109.47054 * 34.99755 * 19 17 16 21 21 C 1.53003 * 109.46769 * 275.00343 * 19 17 16 22 22 Cl 1.80295 * 109.47284 * 155.00141 * 19 17 16 23 23 H 1.09008 * 109.46610 * 180.02562 * 1 2 3 24 24 H 1.08988 * 109.47418 * 300.00141 * 1 2 3 25 25 H 1.09001 * 109.46457 * 60.00747 * 1 2 3 26 26 H 1.07997 * 119.74391 * 359.97438 * 4 3 2 27 27 H 1.08002 * 119.82915 * 180.25887 * 5 4 3 28 28 H 0.96995 * 120.00253 * 179.97438 * 10 9 7 29 29 H 1.07995 * 120.25453 * 180.02562 * 15 6 5 30 30 H 1.08993 * 109.47611 * 59.99835 * 21 19 17 31 31 H 1.08998 * 109.47010 * 180.02562 * 21 19 17 32 32 H 1.09003 * 109.46852 * 299.99536 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0437 1.2065 0.0000 4 6 1.2840 2.3730 -0.0058 5 6 1.8904 3.5939 -0.0001 6 6 3.2972 3.6904 0.0000 7 6 3.9201 4.9587 0.0004 8 1 4.9207 5.0691 -0.3906 9 6 3.2407 6.0713 0.5072 10 7 2.2031 5.9051 1.2876 11 14 3.8141 7.7947 0.0705 12 1 3.1249 8.2475 -1.1645 13 1 3.4917 8.7211 1.1853 14 1 5.2816 7.7854 -0.1567 15 6 4.0775 2.5233 0.0001 16 6 3.4505 1.2785 -0.0004 17 6 4.2526 0.0479 0.0002 18 8 3.7038 -1.0337 0.0003 19 6 5.7575 0.1294 0.0009 20 1 6.0745 0.9898 0.5903 21 6 6.2605 0.2822 -1.4359 22 17 6.4405 -1.3763 0.7200 23 1 -0.3633 -1.0278 0.0005 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 0.2058 2.3103 -0.0107 27 1 1.2903 4.4919 -0.0005 28 1 1.7322 6.6766 1.6394 29 1 5.1554 2.5895 0.0006 30 1 5.8476 1.1924 -1.8707 31 1 7.3489 0.3406 -1.4355 32 1 5.9435 -0.5782 -2.0253 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396062437.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:37:46 Heat of formation + Delta-G solvation = -84.855971 kcal Electronic energy + Delta-G solvation = -18063.592943 eV Core-core repulsion = 15014.533946 eV Total energy + Delta-G solvation = -3049.058997 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.14520 -39.60835 -38.16348 -36.98115 -35.25663 -33.79173 -31.56835 -31.31764 -28.38815 -26.57127 -26.02222 -23.80243 -22.31626 -20.81554 -19.07324 -18.67132 -17.38399 -17.03144 -16.61715 -16.48401 -15.98032 -15.76867 -15.45056 -14.99428 -14.39721 -14.23472 -13.83015 -13.70303 -13.33167 -13.13461 -12.81975 -12.78873 -12.70718 -12.64423 -12.27544 -11.98097 -11.78479 -11.67048 -11.55615 -11.43039 -10.88868 -10.39730 -9.67212 -9.02359 -8.61058 -6.23983 0.04021 0.88499 1.04371 1.44438 1.48545 1.56546 1.77728 2.24794 2.69104 2.72351 2.94164 3.60671 3.86985 3.97871 4.17489 4.24704 4.38001 4.42271 4.65580 4.70229 4.71858 4.74357 4.85934 5.04970 5.13591 5.22624 5.32870 5.45201 5.79130 5.97440 6.04475 6.49586 6.62153 6.72144 6.93246 6.98341 8.36597 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.018249 B = 0.006339 C = 0.004930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1533.958062 B = 4415.856905 C = 5678.484099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.323 6.323 3 C 0.060 3.940 4 C -0.197 4.197 5 C -0.106 4.106 6 C 0.046 3.954 7 C -0.491 4.491 8 H 0.086 0.914 9 C 0.037 3.963 10 N -0.834 5.834 11 Si 0.978 3.022 12 H -0.265 1.265 13 H -0.275 1.275 14 H -0.255 1.255 15 C -0.154 4.154 16 C -0.186 4.186 17 C 0.395 3.605 18 O -0.462 6.462 19 C -0.041 4.041 20 H 0.139 0.861 21 C -0.144 4.144 22 Cl -0.170 7.170 23 H 0.113 0.887 24 H 0.051 0.949 25 H 0.056 0.944 26 H 0.126 0.874 27 H 0.114 0.886 28 H 0.287 0.713 29 H 0.135 0.865 30 H 0.087 0.913 31 H 0.103 0.897 32 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.861 -3.433 -3.328 5.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.237 6.237 3 C 0.014 3.986 4 C -0.215 4.215 5 C -0.125 4.125 6 C 0.044 3.956 7 C -0.521 4.521 8 H 0.104 0.896 9 C -0.177 4.177 10 N -0.461 5.461 11 Si 0.799 3.201 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.179 1.179 15 C -0.174 4.174 16 C -0.188 4.188 17 C 0.274 3.726 18 O -0.338 6.338 19 C -0.085 4.085 20 H 0.157 0.843 21 C -0.201 4.201 22 Cl -0.143 7.143 23 H 0.132 0.868 24 H 0.070 0.930 25 H 0.075 0.925 26 H 0.144 0.856 27 H 0.132 0.868 28 H 0.098 0.902 29 H 0.152 0.848 30 H 0.106 0.894 31 H 0.121 0.879 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.543 -4.197 -3.129 5.820 hybrid contribution -0.411 0.989 0.208 1.091 sum 2.133 -3.207 -2.920 4.834 Atomic orbital electron populations 1.23162 0.78295 1.04454 1.01296 1.86039 1.21792 1.26746 1.89106 1.19098 0.91343 0.84268 1.03842 1.20835 0.99409 0.92188 1.09113 1.21229 0.95700 0.96069 0.99527 1.17846 0.92011 0.93581 0.92126 1.19715 1.02638 0.92274 1.37439 0.89555 1.26651 0.94093 1.05158 0.91826 1.69855 1.18390 1.34522 1.23327 0.85251 0.80007 0.76200 0.78617 1.19014 1.20020 1.17888 1.21348 0.99075 0.89611 1.07343 1.19511 0.90659 0.94527 1.14062 1.22448 0.90504 0.88096 0.71597 1.90511 1.75110 1.31288 1.36902 1.24671 0.92964 0.89747 1.01158 0.84288 1.22027 1.03913 1.03918 0.90282 1.98707 1.86211 1.43247 1.86180 0.86839 0.93017 0.92533 0.85590 0.86767 0.90215 0.84770 0.89396 0.87862 0.91587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.80 113.37 1.11 1.81 16 2 O -0.32 -13.52 8.54 -65.95 -0.56 -14.09 16 3 C 0.06 2.69 6.73 23.15 0.16 2.84 16 4 C -0.20 -8.62 8.95 22.06 0.20 -8.42 16 5 C -0.11 -5.09 8.62 22.50 0.19 -4.90 16 6 C 0.05 2.25 5.57 -21.32 -0.12 2.13 16 7 C -0.49 -23.60 9.03 23.42 0.21 -23.39 16 8 H 0.09 3.90 7.91 -2.91 -0.02 3.87 16 9 C 0.04 1.70 5.13 85.23 0.44 2.13 16 10 N -0.83 -40.59 10.97 21.82 0.24 -40.35 16 11 Si 0.98 35.26 29.60 68.60 2.03 37.29 16 12 H -0.27 -9.38 7.11 99.48 0.71 -8.67 16 13 H -0.28 -9.69 7.11 99.48 0.71 -8.99 16 14 H -0.26 -8.86 7.11 99.48 0.71 -8.15 16 15 C -0.15 -6.59 9.10 23.07 0.21 -6.38 16 16 C -0.19 -8.00 5.88 -20.10 -0.12 -8.12 16 17 C 0.39 15.46 6.27 27.95 0.18 15.64 16 18 O -0.46 -20.43 15.07 17.94 0.27 -20.16 16 19 C -0.04 -1.24 3.03 29.85 0.09 -1.15 16 20 H 0.14 3.81 6.74 -2.39 -0.02 3.79 16 21 C -0.14 -3.50 9.30 71.98 0.67 -2.83 16 22 Cl -0.17 -5.22 28.00 -2.72 -0.08 -5.29 16 23 H 0.11 2.78 8.14 -2.38 -0.02 2.77 16 24 H 0.05 1.50 7.66 -2.39 -0.02 1.48 16 25 H 0.06 1.58 7.63 -2.39 -0.02 1.56 16 26 H 0.13 4.80 6.25 -2.91 -0.02 4.79 16 27 H 0.11 5.71 6.15 -2.91 -0.02 5.70 16 28 H 0.29 12.76 8.30 -92.71 -0.77 11.99 16 29 H 0.13 4.91 6.47 -2.91 -0.02 4.89 16 30 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -58.83 290.56 6.26 -52.57 By element: Atomic # 1 Polarization: 19.54 SS G_CDS: 1.14 Total: 20.68 kcal Atomic # 6 Polarization: -33.86 SS G_CDS: 3.21 Total: -30.65 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 0.24 Total: -40.35 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -0.29 Total: -34.24 kcal Atomic # 14 Polarization: 35.26 SS G_CDS: 2.03 Total: 37.29 kcal Atomic # 17 Polarization: -5.22 SS G_CDS: -0.08 Total: -5.29 kcal Total: -58.83 6.26 -52.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396062437.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.287 kcal (2) G-P(sol) polarization free energy of solvation -58.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds