Wall clock time and date at job start Mon Mar 30 2020 06:43:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35911 * 116.99788 * 2 1 4 4 C 1.38134 * 119.93203 * 354.11478 * 3 2 1 5 5 C 1.40600 * 119.69245 * 180.02562 * 4 3 2 6 6 C 1.41405 * 120.21982 * 179.97438 * 5 4 3 7 7 H 1.07999 * 119.99695 * 330.92445 * 6 5 4 8 8 C 1.39926 * 120.00359 * 150.92204 * 6 5 4 9 9 N 1.30828 * 120.00004 * 164.95211 * 8 6 5 10 10 Si 1.86800 * 119.99990 * 344.95386 * 8 6 5 11 11 H 1.48507 * 109.47168 * 93.54070 * 10 8 6 12 12 H 1.48504 * 109.47338 * 213.54050 * 10 8 6 13 13 H 1.48500 * 109.47330 * 333.54265 * 10 8 6 14 14 C 1.40773 * 119.56811 * 0.03970 * 5 4 3 15 15 C 1.37625 * 119.85315 * 359.93476 * 14 5 4 16 16 C 1.50704 * 119.84646 * 180.02562 * 15 14 5 17 17 H 1.08996 * 109.46987 * 355.01901 * 16 15 14 18 18 Cl 1.80307 * 109.46832 * 235.02270 * 16 15 14 19 19 C 1.50699 * 109.47283 * 115.02289 * 16 15 14 20 20 C 1.50701 * 119.99719 * 275.00128 * 19 16 15 21 21 O 1.20754 * 120.00015 * 94.99460 * 19 16 15 22 22 C 1.38559 * 120.30687 * 0.04395 * 15 14 5 23 23 H 1.09000 * 109.47124 * 304.64076 * 1 2 3 24 24 H 1.08997 * 109.47859 * 64.64188 * 1 2 3 25 25 H 1.08999 * 109.46798 * 184.64445 * 1 2 3 26 26 H 1.08001 * 120.15410 * 359.73894 * 4 3 2 27 27 H 0.97004 * 120.00211 * 180.02562 * 9 8 6 28 28 H 1.08001 * 120.07348 * 179.97438 * 14 5 4 29 29 H 1.08998 * 109.47316 * 359.97438 * 20 19 16 30 30 H 1.09002 * 109.47204 * 120.00114 * 20 19 16 31 31 H 1.08997 * 109.46716 * 239.99917 * 20 19 16 32 32 H 1.07998 * 119.78179 * 179.97438 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2978 2.3657 -0.1227 5 6 1.9413 3.6158 -0.1227 6 6 1.1865 4.8049 -0.2482 7 1 0.2526 4.7968 -0.7906 8 6 1.6493 5.9919 0.3303 9 7 1.1259 7.1383 -0.0210 10 14 3.0147 5.9397 1.6040 11 1 4.3252 6.1356 0.9334 12 1 2.8028 7.0194 2.6014 13 1 3.0017 4.6227 2.2900 14 6 3.3423 3.6759 0.0018 15 6 4.0697 2.5140 0.1235 16 6 5.5694 2.5786 0.2573 17 1 5.8997 3.6115 0.1486 18 17 6.3313 1.5658 -1.0252 19 6 5.9755 2.0613 1.6133 20 6 5.9741 2.9855 2.8036 21 8 6.3019 0.9063 1.7460 22 6 3.4297 1.2851 0.1232 23 1 -0.3633 0.5842 0.8455 24 1 -0.3635 0.4401 -0.9286 25 1 -0.3633 -1.0243 0.0832 26 1 0.2240 2.3083 -0.2230 27 1 1.4471 7.9613 0.3798 28 1 3.8450 4.6318 0.0024 29 1 5.6539 3.9796 2.4914 30 1 5.2883 2.6032 3.5597 31 1 6.9796 3.0424 3.2205 32 1 4.0089 0.3786 0.2188 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396063716.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:34 Heat of formation + Delta-G solvation = -87.560982 kcal Electronic energy + Delta-G solvation = -18255.893525 eV Core-core repulsion = 15206.717230 eV Total energy + Delta-G solvation = -3049.176295 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08405 -40.33329 -38.47667 -36.98219 -35.58154 -33.58007 -31.99504 -30.82665 -28.49762 -27.87103 -26.83523 -23.16368 -22.35843 -20.70716 -19.53287 -18.14595 -17.32370 -17.19463 -16.94094 -16.67259 -16.44409 -16.22505 -16.13621 -14.93200 -14.64167 -14.57027 -13.93417 -13.76765 -13.49248 -13.31748 -13.07508 -12.96816 -12.88255 -12.54651 -12.47187 -12.07063 -11.74897 -11.68801 -11.57059 -11.51646 -11.02057 -10.69287 -9.62508 -8.99236 -8.91123 -6.59613 0.22725 0.74443 0.86696 1.20689 1.27003 1.46146 1.54419 2.13810 2.48700 2.51467 2.93304 3.39214 3.59337 3.88821 3.98883 4.31947 4.39507 4.41693 4.49832 4.50980 4.58651 4.59781 4.70262 4.81940 5.02286 5.04932 5.28001 5.54551 5.64878 5.73479 5.99424 6.22440 6.28281 6.45667 6.68048 6.81089 8.16079 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.013786 B = 0.009629 C = 0.006752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2030.611654 B = 2907.133411 C = 4146.148079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.340 6.340 3 C 0.152 3.848 4 C -0.294 4.294 5 C 0.107 3.893 6 C -0.474 4.474 7 H 0.057 0.943 8 C 0.044 3.956 9 N -0.844 5.844 10 Si 0.952 3.048 11 H -0.237 1.237 12 H -0.280 1.280 13 H -0.237 1.237 14 C -0.244 4.244 15 C -0.025 4.025 16 C -0.014 4.014 17 H 0.152 0.848 18 Cl -0.156 7.156 19 C 0.364 3.636 20 C -0.197 4.197 21 O -0.464 6.464 22 C -0.241 4.241 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.124 0.876 26 H 0.115 0.885 27 H 0.296 0.704 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.816 -4.401 5.160 9.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.254 6.254 3 C 0.108 3.892 4 C -0.314 4.314 5 C 0.104 3.896 6 C -0.503 4.503 7 H 0.075 0.925 8 C -0.171 4.171 9 N -0.469 5.469 10 Si 0.774 3.226 11 H -0.162 1.162 12 H -0.207 1.207 13 H -0.160 1.160 14 C -0.264 4.264 15 C -0.026 4.026 16 C -0.058 4.058 17 H 0.170 0.830 18 Cl -0.129 7.129 19 C 0.239 3.761 20 C -0.254 4.254 21 O -0.337 6.337 22 C -0.261 4.261 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.143 0.857 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.147 0.853 32 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 7.048 -5.002 5.105 10.037 hybrid contribution -0.460 0.497 -0.222 0.713 sum 6.588 -4.505 4.883 9.356 Atomic orbital electron populations 1.23198 0.77213 1.04924 1.01575 1.85950 1.22918 1.27447 1.89092 1.18799 0.92063 0.83708 0.94669 1.21254 0.99036 0.91965 1.19120 1.17511 0.91749 0.92477 0.87889 1.19454 1.07065 0.92368 1.31409 0.92493 1.26979 0.98740 0.93560 0.97846 1.69696 1.40013 0.99906 1.37267 0.85725 0.78797 0.79866 0.78244 1.16155 1.20672 1.15978 1.20879 0.93642 0.96507 1.15332 1.18638 0.90993 0.92987 0.99941 1.23879 0.92779 0.99795 0.89348 0.83007 1.98719 1.83373 1.74119 1.56711 1.24932 0.70937 0.89230 0.90984 1.22324 1.06965 1.00113 0.95953 1.90415 1.36074 1.20391 1.86856 1.19673 0.91330 0.96924 1.18186 0.92744 0.92924 0.85745 0.86713 0.89302 0.86615 0.88873 0.87723 0.85336 0.87301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 9.81 113.37 1.11 1.84 16 2 O -0.34 -13.00 10.50 -92.55 -0.97 -13.97 16 3 C 0.15 6.52 6.67 22.46 0.15 6.67 16 4 C -0.29 -13.24 8.77 22.82 0.20 -13.04 16 5 C 0.11 5.11 5.15 -21.30 -0.11 5.00 16 6 C -0.47 -24.90 9.60 23.46 0.23 -24.68 16 7 H 0.06 3.26 8.06 -2.91 -0.02 3.24 16 8 C 0.04 2.19 5.45 85.25 0.46 2.65 16 9 N -0.84 -43.24 13.93 21.82 0.30 -42.94 16 10 Si 0.95 36.57 24.41 68.60 1.67 38.24 16 11 H -0.24 -7.94 6.65 99.48 0.66 -7.28 16 12 H -0.28 -10.27 7.11 99.48 0.71 -9.56 16 13 H -0.24 -8.94 6.73 99.48 0.67 -8.27 16 14 C -0.24 -10.44 6.68 22.74 0.15 -10.29 16 15 C -0.02 -0.97 4.83 -19.93 -0.10 -1.07 16 16 C -0.01 -0.44 3.20 29.10 0.09 -0.35 16 17 H 0.15 3.93 7.86 -2.39 -0.02 3.92 16 18 Cl -0.16 -5.21 27.49 -2.72 -0.07 -5.29 16 19 C 0.36 10.73 6.16 29.10 0.18 10.91 16 20 C -0.20 -4.09 10.33 71.24 0.74 -3.35 16 21 O -0.46 -16.23 17.01 -1.43 -0.02 -16.25 16 22 C -0.24 -10.11 8.92 22.56 0.20 -9.90 16 23 H 0.05 1.53 7.66 -2.39 -0.02 1.52 16 24 H 0.05 1.48 7.67 -2.39 -0.02 1.46 16 25 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 26 H 0.11 4.92 6.31 -2.91 -0.02 4.90 16 27 H 0.30 13.54 8.30 -92.71 -0.77 12.77 16 28 H 0.12 4.66 4.23 -2.91 -0.01 4.64 16 29 H 0.09 1.76 8.00 -2.39 -0.02 1.74 16 30 H 0.10 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.11 4.59 7.97 -2.91 -0.02 4.57 16 Total: -1.00 -60.91 289.86 5.27 -55.63 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: 1.06 Total: 20.19 kcal Atomic # 6 Polarization: -38.92 SS G_CDS: 3.31 Total: -35.61 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: 0.30 Total: -42.94 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -1.00 Total: -30.22 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 1.67 Total: 38.24 kcal Atomic # 17 Polarization: -5.21 SS G_CDS: -0.07 Total: -5.29 kcal Total: -60.91 5.27 -55.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396063716.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.929 kcal (2) G-P(sol) polarization free energy of solvation -60.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds