Wall clock time and date at job start Mon Mar 30 2020 06:43:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35899 * 116.99764 * 2 1 4 4 C 1.38136 * 119.93337 * 354.08009 * 3 2 1 5 5 C 1.40612 * 119.69471 * 180.02562 * 4 3 2 6 6 C 1.41401 * 120.21718 * 180.02562 * 5 4 3 7 7 H 1.08000 * 119.99971 * 330.90134 * 6 5 4 8 8 C 1.39938 * 119.99955 * 150.89129 * 6 5 4 9 9 N 1.30825 * 119.99895 * 164.94385 * 8 6 5 10 10 Si 1.86803 * 120.00010 * 344.94622 * 8 6 5 11 11 H 1.48496 * 109.47041 * 93.60862 * 10 8 6 12 12 H 1.48494 * 109.46882 * 213.61423 * 10 8 6 13 13 H 1.48503 * 109.46931 * 333.61321 * 10 8 6 14 14 C 1.40763 * 119.56356 * 0.02562 * 5 4 3 15 15 C 1.37624 * 119.85851 * 0.02562 * 14 5 4 16 16 C 1.50702 * 119.84827 * 179.97438 * 15 14 5 17 17 H 1.08996 * 109.47226 * 4.97588 * 16 15 14 18 18 Cl 1.80299 * 109.47525 * 124.97798 * 16 15 14 19 19 C 1.50699 * 109.46704 * 244.97706 * 16 15 14 20 20 C 1.50702 * 120.00016 * 274.99466 * 19 16 15 21 21 O 1.20760 * 120.00400 * 95.00342 * 19 16 15 22 22 C 1.38564 * 120.30708 * 359.95773 * 15 14 5 23 23 H 1.08997 * 109.46718 * 184.64356 * 1 2 3 24 24 H 1.08990 * 109.46840 * 304.64461 * 1 2 3 25 25 H 1.08999 * 109.46870 * 64.64463 * 1 2 3 26 26 H 1.08003 * 120.15541 * 359.74552 * 4 3 2 27 27 H 0.97001 * 120.00073 * 180.02562 * 9 8 6 28 28 H 1.08002 * 120.07058 * 180.02562 * 14 5 4 29 29 H 1.09005 * 109.47254 * 90.00384 * 20 19 16 30 30 H 1.09005 * 109.47403 * 210.00185 * 20 19 16 31 31 H 1.09002 * 109.47329 * 330.00296 * 20 19 16 32 32 H 1.07992 * 119.78130 * 180.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2979 2.3656 -0.1235 5 6 1.9415 3.6158 -0.1234 6 6 1.1865 4.8048 -0.2486 7 1 0.2527 4.7969 -0.7910 8 6 1.6493 5.9917 0.3306 9 7 1.1260 7.1382 -0.0204 10 14 3.0143 5.9390 1.6047 11 1 4.3247 6.1368 0.9348 12 1 2.8011 7.0171 2.6034 13 1 3.0021 4.6210 2.2889 14 6 3.3422 3.6759 0.0021 15 6 4.0698 2.5140 0.1229 16 6 5.5695 2.5785 0.2567 17 1 5.8836 3.6199 0.3261 18 17 6.0788 1.6968 1.7446 19 6 6.2092 1.9402 -0.9492 20 6 6.4216 0.4487 -0.9887 21 8 6.5518 2.6238 -1.8840 22 6 3.4298 1.2850 0.1226 23 1 -0.3633 -1.0243 0.0832 24 1 -0.3633 0.5842 0.8454 25 1 -0.3633 0.4401 -0.9287 26 1 0.2241 2.3082 -0.2241 27 1 1.4470 7.9610 0.3808 28 1 3.8449 4.6318 0.0035 29 1 5.5462 -0.0315 -1.4260 30 1 7.3000 0.2227 -1.5933 31 1 6.5723 0.0762 0.0245 32 1 4.0090 0.3786 0.2183 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396063717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:43:49 Heat of formation + Delta-G solvation = -89.094955 kcal Electronic energy + Delta-G solvation = -18203.625993 eV Core-core repulsion = 15154.383179 eV Total energy + Delta-G solvation = -3049.242813 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.13250 -40.38665 -38.49744 -37.20331 -35.61920 -33.58828 -31.74862 -31.04626 -28.50078 -27.92932 -26.87119 -23.17696 -22.35729 -20.73905 -19.60302 -18.14967 -17.33756 -17.30789 -17.11160 -16.59543 -16.43698 -16.25332 -16.17695 -14.97426 -14.72327 -14.64340 -14.07306 -13.84968 -13.50525 -13.20939 -13.16700 -12.98315 -12.83865 -12.63319 -12.49231 -12.20862 -11.82940 -11.71319 -11.64864 -11.42316 -11.07399 -10.76698 -9.63617 -8.99582 -8.97446 -6.63607 0.11780 0.70309 0.82101 1.13568 1.22232 1.36876 1.44500 2.05519 2.43878 2.52497 2.84881 3.37042 3.51878 3.68639 4.15014 4.33606 4.39837 4.45791 4.49661 4.58715 4.60819 4.62076 4.73217 4.83002 5.00154 5.09769 5.25042 5.54005 5.61353 5.72202 5.96743 6.18134 6.18900 6.43129 6.64712 6.80227 8.09741 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.014082 B = 0.009272 C = 0.006692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.840627 B = 3019.080394 C = 4182.981931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.330 6.330 3 C 0.155 3.845 4 C -0.291 4.291 5 C 0.104 3.896 6 C -0.476 4.476 7 H 0.062 0.938 8 C 0.051 3.949 9 N -0.842 5.842 10 Si 0.955 3.045 11 H -0.260 1.260 12 H -0.276 1.276 13 H -0.244 1.244 14 C -0.257 4.257 15 C -0.032 4.032 16 C -0.009 4.009 17 H 0.119 0.881 18 Cl -0.132 7.132 19 C 0.377 3.623 20 C -0.202 4.202 21 O -0.478 6.478 22 C -0.230 4.230 23 H 0.127 0.873 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.117 0.883 27 H 0.296 0.704 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.774 -12.430 3.202 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.244 6.244 3 C 0.110 3.890 4 C -0.312 4.312 5 C 0.101 3.899 6 C -0.505 4.505 7 H 0.081 0.919 8 C -0.165 4.165 9 N -0.468 5.468 10 Si 0.778 3.222 11 H -0.186 1.186 12 H -0.202 1.202 13 H -0.168 1.168 14 C -0.277 4.277 15 C -0.033 4.033 16 C -0.054 4.054 17 H 0.137 0.863 18 Cl -0.105 7.105 19 C 0.253 3.747 20 C -0.258 4.258 21 O -0.353 6.353 22 C -0.249 4.249 23 H 0.145 0.855 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.134 0.866 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.132 0.868 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 6.996 -12.040 2.810 14.206 hybrid contribution -0.329 1.010 0.397 1.134 sum 6.667 -11.030 3.207 13.281 Atomic orbital electron populations 1.23206 0.77336 1.05023 1.01450 1.85936 1.22706 1.26793 1.88976 1.18784 0.92280 0.83603 0.94361 1.21291 0.99228 0.91959 1.18679 1.17514 0.91381 0.92950 0.88039 1.19480 1.07227 0.92333 1.31473 0.91939 1.26787 0.98190 0.93911 0.97632 1.69681 1.40002 0.99758 1.37339 0.85654 0.78279 0.79649 0.78569 1.18558 1.20244 1.16778 1.20895 0.94104 0.96603 1.16061 1.18688 0.90873 0.93519 1.00174 1.23625 0.94394 1.00115 0.87228 0.86270 1.98703 1.91717 1.79050 1.41066 1.24896 0.71511 0.93884 0.84386 1.22407 1.06036 0.90204 1.07137 1.90439 1.40765 1.67526 1.36551 1.19803 0.91315 0.96881 1.16899 0.85451 0.93009 0.93060 0.86554 0.89369 0.88378 0.86778 0.87395 0.87223 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 9.82 113.37 1.11 1.75 16 2 O -0.33 -11.16 10.50 -92.42 -0.97 -12.13 16 3 C 0.15 6.13 6.67 22.46 0.15 6.28 16 4 C -0.29 -13.00 8.77 22.83 0.20 -12.80 16 5 C 0.10 5.20 5.16 -21.30 -0.11 5.09 16 6 C -0.48 -26.18 9.60 23.46 0.23 -25.96 16 7 H 0.06 3.67 8.06 -2.91 -0.02 3.64 16 8 C 0.05 2.68 5.45 85.25 0.46 3.14 16 9 N -0.84 -45.63 13.93 21.82 0.30 -45.33 16 10 Si 0.95 42.33 24.41 68.60 1.67 44.00 16 11 H -0.26 -11.01 6.66 99.48 0.66 -10.35 16 12 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 13 H -0.24 -10.94 6.73 99.48 0.67 -10.27 16 14 C -0.26 -11.98 6.67 22.74 0.15 -11.83 16 15 C -0.03 -1.26 4.83 -19.93 -0.10 -1.36 16 16 C -0.01 -0.29 3.36 29.10 0.10 -0.20 16 17 H 0.12 4.00 7.87 -2.39 -0.02 3.98 16 18 Cl -0.13 -3.65 26.23 -2.72 -0.07 -3.72 16 19 C 0.38 11.41 6.19 29.10 0.18 11.59 16 20 C -0.20 -4.21 9.20 71.24 0.66 -3.55 16 21 O -0.48 -17.62 17.84 -1.45 -0.03 -17.65 16 22 C -0.23 -8.52 8.77 22.56 0.20 -8.32 16 23 H 0.13 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 1.37 7.66 -2.39 -0.02 1.35 16 25 H 0.05 1.33 7.67 -2.39 -0.02 1.31 16 26 H 0.12 4.91 6.31 -2.91 -0.02 4.90 16 27 H 0.30 14.41 8.30 -92.71 -0.77 13.64 16 28 H 0.10 4.65 4.23 -2.91 -0.01 4.64 16 29 H 0.11 2.25 7.87 -2.38 -0.02 2.24 16 30 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 31 H 0.11 1.98 6.30 -2.39 -0.02 1.96 16 32 H 0.14 4.37 6.94 -2.91 -0.02 4.35 16 Total: -1.00 -61.47 285.36 5.21 -56.27 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: 1.07 Total: 14.72 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 3.23 Total: -36.16 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.30 Total: -45.33 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -1.00 Total: -29.78 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.67 Total: 44.00 kcal Atomic # 17 Polarization: -3.65 SS G_CDS: -0.07 Total: -3.72 kcal Total: -61.47 5.21 -56.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396063717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.829 kcal (2) G-P(sol) polarization free energy of solvation -61.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds