Wall clock time and date at job start Mon Mar 30 2020 06:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35678 * 117.00092 * 2 1 4 4 C 1.39358 * 119.41988 * 0.02562 * 3 2 1 5 5 C 1.36226 * 121.30678 * 179.70684 * 4 3 2 6 6 C 1.40959 * 120.06610 * 0.52917 * 5 4 3 7 7 C 1.40477 * 120.56094 * 179.76172 * 6 5 4 8 8 H 1.08004 * 120.00070 * 214.02887 * 7 6 5 9 9 C 1.40376 * 120.00176 * 34.02247 * 7 6 5 10 10 N 1.30593 * 120.00483 * 191.32560 * 9 7 6 11 11 Si 1.86803 * 120.00006 * 11.32969 * 9 7 6 12 12 H 1.48492 * 109.47062 * 267.36869 * 11 9 7 13 13 H 1.48501 * 109.46683 * 27.36927 * 11 9 7 14 14 H 1.48501 * 109.47466 * 147.36636 * 11 9 7 15 15 C 1.46730 * 118.88225 * 359.48479 * 6 5 4 16 16 C 1.46602 * 120.61994 * 180.27372 * 15 6 5 17 17 O 1.21341 * 119.99896 * 355.32293 * 16 15 6 18 18 C 1.50700 * 119.99901 * 175.31782 * 16 15 6 19 19 C 1.53000 * 109.47032 * 179.97438 * 18 16 15 20 20 Cl 1.80303 * 109.46973 * 179.97438 * 19 18 16 21 21 C 1.38772 * 119.42326 * 179.97438 * 3 2 1 22 22 H 1.08998 * 109.47183 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.46632 * 299.99840 * 1 2 3 24 24 H 1.08998 * 109.47006 * 59.99736 * 1 2 3 25 25 H 1.07999 * 119.34773 * 359.97438 * 4 3 2 26 26 H 1.08002 * 119.96674 * 180.28741 * 5 4 3 27 27 H 0.96993 * 120.00328 * 180.02562 * 10 9 7 28 28 H 1.08998 * 109.47285 * 300.00166 * 18 16 15 29 29 H 1.09001 * 109.47023 * 59.99876 * 18 16 15 30 30 H 1.08998 * 109.47267 * 300.00233 * 19 18 16 31 31 H 1.09001 * 109.47273 * 60.00084 * 19 18 16 32 32 H 1.08001 * 120.08805 * 0.05109 * 21 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2742 2.3699 0.0005 5 6 1.8524 3.6034 0.0065 6 6 3.2567 3.7251 0.0010 7 6 3.8638 4.9919 0.0021 8 1 4.7941 5.1453 -0.5248 9 6 3.2614 6.0584 0.6878 10 7 3.6965 7.2771 0.5115 11 14 1.8374 5.7346 1.8526 12 1 0.5547 5.8808 1.1188 13 1 1.9440 4.3556 2.3932 14 1 1.8815 6.7098 2.9716 15 6 4.0737 2.5063 0.0005 16 6 5.5374 2.5886 0.0009 17 8 6.0844 3.6684 -0.0840 18 6 6.3627 1.3321 0.1068 19 6 7.8489 1.6946 0.0839 20 17 8.8362 0.1914 0.2114 21 6 3.4315 1.2675 0.0005 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8899 25 1 0.1972 2.2902 0.0005 26 1 1.2341 4.4889 0.0115 27 1 3.2805 8.0139 0.9856 28 1 6.1274 0.8204 1.0400 29 1 6.1360 0.6766 -0.7341 30 1 8.0838 2.2061 -0.8495 31 1 8.0759 2.3504 0.9245 32 1 4.0119 0.3568 0.0001 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000396063858.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:27 Heat of formation + Delta-G solvation = -88.743272 kcal Electronic energy + Delta-G solvation = -17922.222173 eV Core-core repulsion = 14872.994609 eV Total energy + Delta-G solvation = -3049.227563 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.81466 -39.84347 -37.73376 -36.96393 -35.46095 -33.54845 -31.96407 -31.60877 -28.65399 -26.52667 -25.55246 -23.81722 -22.37149 -20.45314 -19.50547 -18.55844 -17.43201 -16.84902 -16.59080 -16.35377 -16.29380 -15.88213 -15.32221 -15.04059 -14.60204 -14.45545 -14.22056 -13.83738 -13.62235 -13.36320 -12.95710 -12.77078 -12.72589 -12.57521 -12.17351 -12.08526 -11.65187 -11.55924 -11.46523 -11.30383 -11.05057 -10.12347 -9.70583 -9.04868 -8.88743 -6.46613 0.01598 0.78726 1.21156 1.24593 1.34130 1.43288 1.82594 2.04874 2.57764 2.74620 3.37466 3.48359 3.76783 3.98143 4.06620 4.18368 4.45294 4.48246 4.51899 4.63728 4.77953 4.80037 4.81637 4.89300 4.94695 5.02134 5.23830 5.45960 5.63633 5.80408 5.94472 6.30792 6.52679 6.69640 6.88295 7.09529 8.08250 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.013766 B = 0.007360 C = 0.004993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.439353 B = 3803.499033 C = 5606.136447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.338 6.338 3 C -0.012 4.012 4 C -0.123 4.123 5 C -0.219 4.219 6 C 0.080 3.920 7 C -0.434 4.434 8 H 0.080 0.920 9 C 0.040 3.960 10 N -0.829 5.829 11 Si 0.963 3.037 12 H -0.248 1.248 13 H -0.250 1.250 14 H -0.276 1.276 15 C -0.277 4.277 16 C 0.389 3.611 17 O -0.502 6.502 18 C -0.160 4.160 19 C -0.009 4.009 20 Cl -0.189 7.189 21 C -0.051 4.051 22 H 0.118 0.882 23 H 0.051 0.949 24 H 0.053 0.947 25 H 0.137 0.863 26 H 0.109 0.891 27 H 0.298 0.702 28 H 0.119 0.881 29 H 0.121 0.879 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.217 -11.979 1.330 12.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.254 6.254 3 C -0.056 4.056 4 C -0.142 4.142 5 C -0.238 4.238 6 C 0.077 3.923 7 C -0.461 4.461 8 H 0.098 0.902 9 C -0.177 4.177 10 N -0.454 5.454 11 Si 0.785 3.215 12 H -0.172 1.172 13 H -0.174 1.174 14 H -0.203 1.203 15 C -0.279 4.279 16 C 0.273 3.727 17 O -0.383 6.383 18 C -0.197 4.197 19 C -0.072 4.072 20 Cl -0.163 7.163 21 C -0.069 4.069 22 H 0.137 0.863 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.155 0.845 26 H 0.126 0.874 27 H 0.109 0.891 28 H 0.137 0.863 29 H 0.139 0.861 30 H 0.113 0.887 31 H 0.111 0.889 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.721 -11.434 1.311 11.826 hybrid contribution -0.578 0.721 0.257 0.960 sum -3.299 -10.713 1.568 11.318 Atomic orbital electron populations 1.23145 0.78022 1.04775 1.01192 1.85865 1.22072 1.26480 1.90959 1.18535 0.92062 0.84026 1.10985 1.20939 1.00062 0.91977 1.01173 1.20792 0.94236 0.97084 1.11659 1.18921 0.91679 0.92399 0.89332 1.19908 1.07879 0.92168 1.26154 0.90208 1.27145 0.99210 0.93622 0.97715 1.69575 1.39059 1.01116 1.35641 0.85550 0.78167 0.79757 0.78008 1.17227 1.17360 1.20254 1.21035 0.94004 0.92545 1.20338 1.22120 0.88690 0.89658 0.72212 1.90518 1.74808 1.32658 1.40345 1.22228 0.92699 0.97753 1.07050 1.24042 0.91012 0.86317 1.05820 1.98694 1.74594 1.43972 1.99045 1.20521 0.91499 0.96651 0.98255 0.86340 0.93004 0.92882 0.84507 0.87359 0.89069 0.86308 0.86084 0.88711 0.88874 0.83686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 9.79 113.37 1.11 1.63 16 2 O -0.34 -10.66 10.47 -89.96 -0.94 -11.60 16 3 C -0.01 -0.45 6.69 22.67 0.15 -0.30 16 4 C -0.12 -4.64 8.91 22.07 0.20 -4.44 16 5 C -0.22 -9.71 6.95 22.47 0.16 -9.55 16 6 C 0.08 4.01 5.23 -19.85 -0.10 3.91 16 7 C -0.43 -24.26 8.48 23.34 0.20 -24.06 16 8 H 0.08 5.03 6.02 -2.91 -0.02 5.01 16 9 C 0.04 2.12 5.48 85.40 0.47 2.58 16 10 N -0.83 -44.91 13.92 21.90 0.30 -44.60 16 11 Si 0.96 40.85 24.47 68.60 1.68 42.53 16 12 H -0.25 -9.58 6.72 99.48 0.67 -8.91 16 13 H -0.25 -10.81 6.71 99.48 0.67 -10.15 16 14 H -0.28 -11.08 7.11 99.48 0.71 -10.37 16 15 C -0.28 -12.16 6.06 -18.56 -0.11 -12.27 16 16 C 0.39 15.98 7.08 27.87 0.20 16.17 16 17 O -0.50 -24.79 13.36 -3.22 -0.04 -24.83 16 18 C -0.16 -4.58 4.51 29.85 0.13 -4.44 16 19 C -0.01 -0.25 5.95 71.98 0.43 0.18 16 20 Cl -0.19 -4.69 29.15 -2.72 -0.08 -4.77 16 21 C -0.05 -1.89 9.40 22.71 0.21 -1.67 16 22 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 23 H 0.05 1.08 7.62 -2.38 -0.02 1.07 16 24 H 0.05 1.10 7.62 -2.39 -0.02 1.08 16 25 H 0.14 4.18 6.15 -2.91 -0.02 4.16 16 26 H 0.11 4.70 4.76 -2.91 -0.01 4.69 16 27 H 0.30 14.35 8.29 -92.71 -0.77 13.58 16 28 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 29 H 0.12 2.98 7.96 -2.39 -0.02 2.96 16 30 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 31 H 0.09 2.66 8.10 -2.39 -0.02 2.64 16 32 H 0.15 4.39 7.05 -2.91 -0.02 4.37 16 Total: -1.00 -63.01 284.36 5.03 -57.98 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 1.07 Total: 17.57 kcal Atomic # 6 Polarization: -35.31 SS G_CDS: 3.04 Total: -32.27 kcal Atomic # 7 Polarization: -44.91 SS G_CDS: 0.30 Total: -44.60 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.98 Total: -36.44 kcal Atomic # 14 Polarization: 40.85 SS G_CDS: 1.68 Total: 42.53 kcal Atomic # 17 Polarization: -4.69 SS G_CDS: -0.08 Total: -4.77 kcal Total: -63.01 5.03 -57.98 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396063858.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.764 kcal (2) G-P(sol) polarization free energy of solvation -63.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds