Wall clock time and date at job start Mon Mar 30 2020 06:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35678 * 116.99668 * 2 1 4 4 C 1.39328 * 119.82043 * 0.02562 * 3 2 1 5 5 C 1.36423 * 120.18520 * 179.76165 * 4 3 2 6 6 C 1.40850 * 119.80883 * 0.46853 * 5 4 3 7 7 C 1.41219 * 120.17602 * 179.78808 * 6 5 4 8 8 H 1.07998 * 119.99781 * 153.96399 * 7 6 5 9 9 C 1.39893 * 119.99941 * 333.95934 * 7 6 5 10 10 N 1.30875 * 120.00101 * 343.27006 * 9 7 6 11 11 Si 1.86797 * 119.99643 * 163.26448 * 9 7 6 12 12 H 1.48503 * 109.47287 * 265.61195 * 11 9 7 13 13 H 1.48497 * 109.47247 * 25.61539 * 11 9 7 14 14 H 1.48497 * 109.47158 * 145.61661 * 11 9 7 15 15 C 1.40812 * 119.64346 * 359.51227 * 6 5 4 16 16 C 1.50696 * 120.09581 * 180.27501 * 15 6 5 17 17 C 1.50697 * 109.47380 * 84.99830 * 16 15 6 18 18 O 1.20763 * 119.99749 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.00264 * 180.02562 * 17 16 15 20 20 Cl 1.80308 * 109.47242 * 180.02562 * 19 17 16 21 21 C 1.36450 * 119.81095 * 0.25131 * 15 6 5 22 22 H 1.09001 * 109.47493 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.47283 * 299.99757 * 1 2 3 24 24 H 1.09002 * 109.47358 * 60.00011 * 1 2 3 25 25 H 1.08003 * 119.90728 * 359.97438 * 4 3 2 26 26 H 1.08001 * 120.09178 * 180.25634 * 5 4 3 27 27 H 0.96997 * 119.99745 * 180.02562 * 10 9 7 28 28 H 1.09002 * 109.47648 * 205.00242 * 16 15 6 29 29 H 1.09010 * 109.47151 * 324.99909 * 16 15 6 30 30 H 1.09007 * 109.47013 * 299.99648 * 19 17 16 31 31 H 1.08998 * 109.47489 * 59.99770 * 19 17 16 32 32 H 1.07997 * 119.90708 * 179.97438 * 21 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0448 1.2089 0.0000 4 6 1.2823 2.3750 0.0005 5 6 1.8938 3.5945 0.0055 6 6 3.3001 3.6726 0.0000 7 6 3.9412 4.9309 0.0005 8 1 4.9368 5.0295 0.4073 9 6 3.2867 6.0496 -0.5260 10 7 2.2448 5.8929 -1.3024 11 14 3.8998 7.7669 -0.1207 12 1 3.1467 8.2995 1.0431 13 1 5.3465 7.7109 0.2094 14 1 3.6934 8.6555 -1.2924 15 6 4.0634 2.4893 -0.0001 16 6 5.5686 2.5609 0.0003 17 6 6.0641 2.7082 1.4159 18 8 5.2762 2.7501 2.3301 19 6 7.5428 2.8032 1.6906 20 17 7.8150 2.9703 3.4652 21 6 3.4361 1.2775 -0.0001 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 0.2040 2.3133 0.0005 26 1 1.3012 4.4974 0.0100 27 1 1.7912 6.6686 -1.6677 28 1 5.9761 1.6480 -0.4341 29 1 5.8917 3.4193 -0.5889 30 1 8.0379 1.9011 1.3308 31 1 7.9529 3.6723 1.1763 32 1 4.0200 0.3689 -0.0006 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000396064148.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:17 Heat of formation + Delta-G solvation = -68.961083 kcal Electronic energy + Delta-G solvation = -18013.278548 eV Core-core repulsion = 14964.908805 eV Total energy + Delta-G solvation = -3048.369743 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 268.065 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.25562 -38.43195 -36.45486 -35.69747 -33.45012 -31.77806 -29.61077 -29.39810 -27.21929 -25.86305 -24.51006 -21.15644 -20.32575 -18.96466 -17.26456 -16.65590 -15.73512 -15.59329 -15.08333 -14.78283 -14.71269 -14.63009 -13.93193 -13.20477 -12.93694 -12.82473 -12.37744 -12.19848 -11.88200 -11.50783 -11.22111 -11.18663 -11.11750 -10.91351 -10.66535 -10.59410 -10.34039 -9.91536 -9.73632 -9.45879 -9.09450 -9.06647 -7.55602 -7.00470 -6.76365 -4.30428 2.25110 2.48213 2.72600 2.89331 3.06151 3.08616 3.20578 3.91072 4.29060 4.39222 4.59831 5.08021 5.22002 5.53634 5.65810 5.73067 5.76197 5.91930 5.94237 6.12642 6.18409 6.32987 6.55715 6.77628 7.02353 7.25686 7.39683 7.54401 7.87183 7.92405 8.04050 8.11346 8.39667 8.61369 8.85103 8.96000 10.17185 Molecular weight = 268.07amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.008833 C = 0.005284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.476538 B = 3169.005082 C = 5298.132352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.335 6.335 3 C -0.006 4.006 4 C -0.172 4.172 5 C -0.127 4.127 6 C 0.107 3.893 7 C -0.457 4.457 8 H 0.074 0.926 9 C 0.077 3.923 10 N -0.798 5.798 11 Si 0.903 3.097 12 H -0.269 1.269 13 H -0.262 1.262 14 H -0.278 1.278 15 C -0.163 4.163 16 C -0.094 4.094 17 C 0.339 3.661 18 O -0.410 6.410 19 C -0.090 4.090 20 Cl -0.164 7.164 21 C -0.100 4.100 22 H 0.081 0.919 23 H 0.042 0.958 24 H 0.043 0.957 25 H 0.095 0.905 26 H 0.121 0.879 27 H 0.280 0.720 28 H 0.086 0.914 29 H 0.106 0.894 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.543 -3.795 0.515 6.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.251 6.251 3 C -0.049 4.049 4 C -0.191 4.191 5 C -0.147 4.147 6 C 0.104 3.896 7 C -0.487 4.487 8 H 0.092 0.908 9 C -0.141 4.141 10 N -0.424 5.424 11 Si 0.728 3.272 12 H -0.194 1.194 13 H -0.186 1.186 14 H -0.203 1.203 15 C -0.164 4.164 16 C -0.132 4.132 17 C 0.210 3.790 18 O -0.279 6.279 19 C -0.154 4.154 20 Cl -0.137 7.137 21 C -0.119 4.119 22 H 0.099 0.901 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.114 0.886 26 H 0.139 0.861 27 H 0.091 0.909 28 H 0.104 0.896 29 H 0.124 0.876 30 H 0.137 0.863 31 H 0.139 0.861 32 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.057 -3.798 1.010 6.404 hybrid contribution 0.017 1.057 0.065 1.059 sum 5.073 -2.741 1.074 5.866 Atomic orbital electron populations 1.22693 0.80945 1.01615 1.00410 1.85802 1.19221 1.28735 1.91295 1.18538 0.91758 0.82914 1.11714 1.20643 0.97607 0.93214 1.07640 1.20912 0.95068 0.95655 1.03020 1.17323 0.91428 0.91684 0.89142 1.19374 1.02134 0.92070 1.35137 0.90789 1.25851 0.94213 1.01327 0.92659 1.69825 1.17439 1.32654 1.22449 0.86377 0.80395 0.81541 0.78907 1.19380 1.18595 1.20320 1.18655 0.91881 0.92722 1.13184 1.20632 0.95429 1.03471 0.93627 1.24820 0.88689 0.72932 0.92601 1.90457 1.57628 1.32836 1.46979 1.25105 1.00200 1.06654 0.83405 1.98719 1.96810 1.98725 1.19494 1.19361 0.90790 0.96411 1.05364 0.90094 0.93944 0.93885 0.88647 0.86146 0.90944 0.89629 0.87609 0.86346 0.86101 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.64 9.80 101.05 0.99 1.63 16 2 O -0.33 -7.07 10.48 -18.74 -0.20 -7.27 16 3 C -0.01 -0.14 6.71 -38.78 -0.26 -0.40 16 4 C -0.17 -4.09 8.96 -39.83 -0.36 -4.45 16 5 C -0.13 -3.29 8.63 -39.25 -0.34 -3.62 16 6 C 0.11 2.73 5.56 -106.80 -0.59 2.14 16 7 C -0.46 -11.51 8.13 -37.83 -0.31 -11.82 16 8 H 0.07 1.78 6.65 -52.49 -0.35 1.43 16 9 C 0.08 1.86 5.15 -17.34 -0.09 1.77 16 10 N -0.80 -20.03 10.99 55.54 0.61 -19.42 16 11 Si 0.90 18.41 29.59 -169.99 -5.03 13.38 16 12 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 13 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 15 C -0.16 -3.73 4.40 -104.30 -0.46 -4.19 16 16 C -0.09 -1.68 5.11 -29.04 -0.15 -1.83 16 17 C 0.34 5.93 6.83 -29.04 -0.20 5.73 16 18 O -0.41 -9.05 15.69 6.00 0.09 -8.95 16 19 C -0.09 -1.14 7.07 36.00 0.25 -0.89 16 20 Cl -0.16 -2.46 28.37 -51.86 -1.47 -3.93 16 21 C -0.10 -2.30 9.54 -39.83 -0.38 -2.68 16 22 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 24 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 25 H 0.10 2.03 6.27 -52.48 -0.33 1.70 16 26 H 0.12 3.20 6.23 -52.49 -0.33 2.87 16 27 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 28 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 29 H 0.11 1.82 7.05 -51.92 -0.37 1.45 16 30 H 0.12 1.10 8.14 -51.92 -0.42 0.67 16 31 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 32 H 0.10 1.97 8.05 -52.49 -0.42 1.54 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -30.03 292.66 -6.88 -36.90 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -3.41 Total: 3.49 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -1.89 Total: -18.61 kcal Atomic # 7 Polarization: -20.03 SS G_CDS: 0.61 Total: -19.42 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.10 Total: -16.22 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Atomic # 17 Polarization: -2.46 SS G_CDS: -1.47 Total: -3.93 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -30.03 -6.88 -36.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000396064148.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.057 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds